Array 1 9172-7326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQH01000161.1 Methanosarcina mazei strain 1.H.A.1A.3 scaffold50_1_size26173-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9171 37 100.0 38 ..................................... CTCTCCTATTAGACGGAAACCGCTTTACTGGCGAATAT 9096 37 100.0 36 ..................................... AGTTTTGTATATACCCCTGTTCTGATTTCTGCCCAT 9023 37 100.0 33 ..................................... TTCACTGATTGGAAACATAGAGAAATAAGCTAT 8953 37 100.0 36 ..................................... CTCCATCTCCTGCGGTATCATGGATATAACAGTCAT 8880 37 100.0 37 ..................................... TAATATAGATTGCAGGATCAATAACGCAGCCCGTATC 8806 37 100.0 36 ..................................... GGAGTTTAGGCCAGATCTTGAGAAAGTAAAAGATAC 8733 37 100.0 34 ..................................... ATAAATGAGAGTTTTGGCGGTAAAACCAAAATAT 8662 37 100.0 36 ..................................... AAAACCGCGTAAGCTGTCCCGTTATCAAGCTTAATA 8589 37 100.0 35 ..................................... ATGAAATTGTCATGAATATAGGCATGGTTGCTATC 8517 37 100.0 33 ..................................... ATTATTTCCCTTGTTTACATATACCCCGGGCCC 8447 37 100.0 37 ..................................... TGAAGCCTTCAATCTCGTAATCATCTAGTTTAGTAAT 8373 37 100.0 33 ..................................... ACCTCGTCCTGCATGGCCTTGATAGTCTGCCAT 8303 37 100.0 36 ..................................... AGAAATCAAATCCCGTCGTAACAAAAGACTGGCTCC 8230 37 100.0 35 ..................................... GATGAAGGGGCTCAGGATAGAATAGATCAAGTTGG 8158 37 100.0 36 ..................................... AGTAATGCAACCATTTTCAACAGTCGGAAGCACCAT 8085 37 100.0 37 ..................................... GGAATAATCACTCATTTTATTATATGAGGAAAGTAAG 8011 37 100.0 33 ..................................... CGTTGTTCTGAAGGTATCCCCGCTTAGAGCCAC 7941 37 100.0 36 ..................................... GGAACTGTCGGCACGAATGATGAAAACGACATCTAC 7868 37 100.0 35 ..................................... TCTATCTTTCATGCAAGGCACACAGGAACTCTAAC 7796 37 100.0 35 ..................................... TATGTTCGGGCTTGCTTTTCATGCGAATATACTTT 7724 37 100.0 34 ..................................... CGAAACTCCAGGAATGAGGCCTCAATCCAGGAGC 7653 37 100.0 35 ..................................... TCAAAAGGCCAACTACCCACAAGTAAAAGCAGCAG 7581 37 100.0 38 ..................................... CTGTCGGTTGTTTGCTTCGATTGTCGCATACCCCGATT 7506 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 7436 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 7362 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 35 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : CCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 17332-12046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQH01000197.1 Methanosarcina mazei strain 1.H.A.1A.3 scaffold12_1_size55133-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17331 37 100.0 37 ..................................... TAAAAAACCTAATGATATTCATGCCACCACGACACGG 17257 37 100.0 36 ..................................... TAGAATGGGTACTAACAATACTGATAGTTTTCACAC 17184 37 100.0 36 ..................................... TCAGGAAGAGGGGTTCACTCATGCTCCTGTTATTTA 17111 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 17040 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 16968 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 16892 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 16818 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 16745 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 16671 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 16598 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 16525 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 16453 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 16381 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 16308 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTAA 16234 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 16162 37 100.0 36 ..................................... AACATTTTATTCCCTCCAAGACAATCCAGCATCGAA 16089 37 100.0 34 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACT 16018 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 15946 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 15873 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 15800 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 15727 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 15655 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 15579 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 15507 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 15434 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 15362 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 15288 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 15216 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 15142 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 15070 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 14998 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 14926 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 14852 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 14780 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 14706 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 14634 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 14559 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 14487 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 14413 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 14334 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 14260 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 14186 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 14113 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 14036 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 13964 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 13892 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 13819 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 13748 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 13677 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 13605 37 100.0 35 ..................................... CTTCACGGAGAAAGATAAAGCCCGGTTAATGGAGA 13533 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 13461 37 100.0 36 ..................................... CTCAAACGCTCATTAAAAGGGCTTCGCTAGATGAAT 13388 37 100.0 36 ..................................... AAAAAGCCGTACATCGTAATGGTGAACTAATAGAGT 13315 37 100.0 38 ..................................... GTTAAACCCATGCTTTTAATAACCTTTTCAGCTTTCTT 13240 37 100.0 35 ..................................... TGTATGTCAATTCGGGAGTTCCGAAACTTGAAATT 13168 37 100.0 35 ..................................... AAAGCTGTGTAATGGTGTATAGTTATGTACTATAG 13096 37 100.0 37 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGGG 13022 37 100.0 34 ..................................... CGTCAACAACGACTCTTGATACGATTATTTTTGA 12951 37 100.0 37 ..................................... TAACTCCTTATGCTCTAATAATCGCAGACGAAACAGT 12877 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 12806 37 100.0 35 ..................................... TTTCAACCCCTCCTTACAGACCATCGTCAGTGATT 12734 37 100.0 35 ..................................... TTTTAAAGTCATCTTCTGGAAAAACACCGACAACT 12662 37 100.0 37 ..................................... ATTCCGTACATGCATTGAGTGCGGTTGGATTATTACT 12588 37 100.0 36 ..................................... CAAACTCAGTCGTTTTAGTGTACTGAGCTTCATAGT 12515 37 100.0 34 ..................................... TAATCGTAACCCTTGCGCCCGTTCATGATCCAGA 12444 37 100.0 35 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAA 12372 37 100.0 36 ..................................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 12299 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 12228 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12155 37 81.1 34 GG...A..AGT..C....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA T [12140] 12083 37 81.1 0 .G...A..AGT..C......................G | T [12067] ========== ====== ====== ====== ===================================== ========================================== ================== 73 37 99.4 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGGGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //