Array 1 466065-466864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000002.1 Micromonospora haikouensis strain JXNU-1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 466065 28 100.0 33 ............................ CTCCCGCAGCCGGTACAGCCGCTCGAGGCGCAT 466126 28 100.0 33 ............................ ACCATGAACCTAGCGATGGGCGTCCTGTTCCTG 466187 28 100.0 33 ............................ CCGCGAGGATCGCGGCCACCTGGCCGACGTGCC 466248 28 100.0 33 ............................ GGCCGGACCGATCTCGCTCCCCCAGTCGCGGAA 466309 28 100.0 33 ............................ CCGACCAAGGACACGTTCACGCTTCGAGATCTC 466370 28 100.0 34 ............................ CTCCCGCGCCGACCGGCGGCCCTTCACCCAGGCA 466432 28 100.0 33 ............................ CGGGACGACGCTGCCCGCTCCGGCACTGGCCGG 466493 28 100.0 16 ............................ CGTCGAACCGAGCGCC Deletion [466537] 466537 28 71.4 33 .AAC.G....T.GGT............. CGGCTTCCACGGCATCCTTCCGGACGCTATCGC CT [466548] 466600 27 92.9 33 .....T...........-.......... CCGGCTCGGTATGGCGGCGGTCATCGCGACGGC 466660 28 96.4 22 ..............T............. CGTGACCCGGACATACGAGGAC Deletion [466710] 466710 28 78.6 33 T...A.G...TC.C.............. CGAACGCTCGCGAGAGAGTCTGGACCAGACCGG GCTGT [466720] 466776 28 89.3 33 T......T................T... GGTGGCGAAGGGCGAGCTGCGCGCCCTGCTGGC 466837 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ================================== ================== 14 28 94.6 31 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGGCGACCCCGACCAGGCAGATGGCCGCGCCGACGACGTCGTAGCGGTCGGGCCGGAACTTGTCGACGACCATGCCCCAGGCAAGGGACCCGGCGACGAACACCCCGCCGTAGGCGGCGAGGATGCGGCCGAAGTTCGCGTCGGGCTGGAACGTGGCGACGAAGCCGTAGAGCCCGAGCGCGACCACGCCGCCCGCGATCCAGAGCAGCCCCCGGTGTTCCCGCCAGCCCTGCCACACCAGCCAGGCCCCGCCGATCTCGGCGAGGGCGGCGAGCAGGAACAGCAGGATCGAGCGGGCGACCGTCATGCGTCAGACCGTAGCCGTGCGGCCCCTCGTCAGCGGTGGACGGGATGGCAGGAGCGGGGGCGCGGTGCCCGCCAAGCGCGGTGAGCCAGCGGTACCTTGTCACCAGCAACCGGGCGGCACGGGCGGAGGGATCTTGGTCGGGCAAGTGAATGAAATCGGCATTGTTGATCTTTAGCAGTCCAGGTCAAGAAGT # Right flank : CCAGCCGGTAGCGGAGCCAGGCCGTCCACAGGCCGTCAAAGGCCGGAGAAGGGCGACCAACGACGACCGAAGCCGCCCAGGTTCGCCCAGCTCACACAGCGTGCCTCGCTGCCCAACGAGGGACCCGACCGAGCCCTTAGCGGTAGTTGGTGAACTGGAGGGCGATGCCGAAGTCCTCGCTCTTGAGCAGGGCGATGACGGCCTGGAGCTCGTCCTTCTTCTTGCCGGTGACCCGGAGCTGGTCGCCCTGGATCTGCGCCTGGACGCCCTTCGGGCCCTCGTCGCGGATCTTCTTGCTGATCGCCTTGGCCTTGTCCGAGTCGATGCCCTGGACGACCTTGGCGTCGATCTTGAAGATCTTGCCCGAGGGCCGCGGCTCGCCCGCGTCCAAGGACTTCAGCGAGATGTTCCGCTTGACCAGCTTCTCCTTCAAGACGTCCAGGGCGGCCCGCACCCGCTCCTCGGTCTCCGCCTGGAGGCTGATCGCCTCCTCGCCCGAC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 190119-188504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000003.1 Micromonospora haikouensis strain JXNU-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 190118 28 100.0 33 ............................ CCGCAGCGACCACACGTGGATGAGCTGCATCAG 190057 28 100.0 33 ............................ GTCGGCGGGGTCCGTAGTCCAGGGCCCGTTCAG 189996 28 100.0 33 ............................ CCCGCCGTCATCACCCCCGCGTCGGAGGACGGA 189935 28 100.0 33 ............................ CCATCGGGATCAGCGTCGCCGGGCTGGCCCTCG 189874 28 100.0 33 ............................ CAAGTTCTGGACGACGGGGTACGCGCTCCAGAC 189813 28 100.0 33 ............................ CAAGGCGGTCCGGGAGCACGGGGCCGGCAGCGT 189752 28 100.0 33 ............................ CTCGGCGTTCATCCTGTACCTGCCGTTGGAGAT 189691 28 100.0 33 ............................ GTAGTCGGCCCGCATGTAGGTCGTGAGTTCACC 189630 28 100.0 33 ............................ GGGGTGGGTGATTGCGCATCTTGTCGCATTGCT 189569 28 100.0 33 ............................ GTAGTCGATGCGGGCTCGCGGAGCCGCCCCCGA 189508 28 100.0 33 ............................ CTGCGGGCCGGTCTCCTCTGGGCTGGTCGTGTC 189447 28 100.0 33 ............................ CGTCAGCCCGGTCGGGTCGGCGATGCTGGGTCC 189386 28 100.0 33 ............................ CCAGGCGGCCCTCACCCAGCTCGACTGGGACCT 189325 28 100.0 33 ............................ CGCCCAGGGCGCCGGCCGCGACCACACCCGCAC 189264 28 100.0 33 ............................ CACCCACGCGGACGCCTTCTGCGGGGTGATCTG 189203 28 100.0 33 ............................ CGGGGACGCGGGAACGCTGATCGTGGACACGGA 189142 28 100.0 33 ............................ CGCCTGGACGCCGCCGAGCGCGACCCGGCGACC 189081 28 100.0 33 ............................ CGCCGCGCTTGCACGGCTCGACGCCCTGGACGC 189020 28 100.0 34 ............................ CGCCGGTTGGCCCCCCGCCTGGACGGCATCCGAG 188958 28 100.0 33 ............................ TTCCTTCACGTCGGCGACGAACTCGCGGATCTT 188897 28 100.0 33 ............................ GGCATGGCCCTGTTCAACTCGAAGCCGGGCGAC 188836 28 100.0 33 ............................ GGCCCGCACGAGGGCGGTGTGACGTGCAGACCA 188775 28 100.0 33 ............................ GGGGGAGATCATGACGGAGGTACGGAAGCCGCG 188714 28 100.0 33 ............................ CTGCCACCACCGCGCCCGCCACGCTCGCCTGAT 188653 28 96.4 33 ..............T............. CGTGCTGTCGACCACCGAGGCTTGGCCCGCACG 188592 28 89.3 34 ...C..........TA............ TGCCCGGCCCGTTGTGCGGGTTCAGCTCCACGAC 188530 27 75.0 0 ...C...G....T.T......-..CC.. | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.5 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGATCTATCTCGACAAGCCGCACGAGACAGCCGCCTACAACACCATCTGGGCCGACATGGCCAGCCGCGCCCTCAACGAGTCCCGATCCCAGAGCCTGATCCAGCAAGCCGCAGAGGAGTACTCTCATGCCTGACCTGACCGGTGCCGTCTGGCGCAAGTCGACCCGAAGCAACAACGGCGGCAACTGCGTCGAGGTCGCCGACAACCTCCCGGGCGTCGTCGGGCTACGCGACAGCAAGGACGTGGCCGGGCCGGTGCTGACCTTCACCCCGTCGTCCTGGGCCGCCTTCATCGAGGACGTCAAGGCCCAGCCACCTGGCCGCTGAAACTGGAAGGAGGCTGCGCCACGGTTCCTCTCCTGCCCACCGAAGATGCCGGTCAACTCGTAGGCTGTTCACCACCTAGCCTGGACGCCCAGCCACCACTCAGGATGTGATCTTGGCCAGCAAAGTGAATGAAATCCGCCTAGTTGATCTATAGCGCCCCAGGTCAGGAAGT # Right flank : TGTGTCCTATAGGTGTGAACCTGCCGCACTACGTCAGTCGGGGCGATGGCGCGCTGCGACTGTCAGCGACTACTATCGATCGGCGCAGTTGCGCACCGGTCGTGATGTTGCAGTGACCTGGAGTCATGGTGCCTCGTCCCGAACGCCAGATAGACCCTGAAGCGGGCCCCATCCAGTCGTTTGCCGCAGAGCTTCGACAGCTCCGCGAAGGAGCAGGCTCGCCGAAGTACCTCCAGATGTCGCGCGCGTCGGGCCGGTCCAGAACCGCCCTGGCCGAAGCTGCCGGCGGCGATCATCTGCCCACCTGGGAGACGGTCGAGGCGTTCGTCAGGGCATGCGGCGGCGATGTCCGTCAGTGGCGGGTGAGGTGGGAGACGGCGCAGGAGGCGATACGGCCGGCAGAGCCGCCGTCACGCAGTGGCGCGGCAGCTACCGTCGCCGATCTTCCTGACGATGCGCCGCCCCTGGTCGCCGGACGGCCGGCGATCCGCCGTCGGCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152493-150818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152492 28 100.0 33 ............................ GGGTCAGTTCCTCGTCCGTGACCGGGACGGCCG 152431 28 100.0 33 ............................ CTCTCCGGCGACAACCAGTTCGACGCCGGAGAG 152370 28 100.0 33 ............................ CCGGTTCGCACGGGCCCGACCGAGCACGCACGA 152309 28 100.0 33 ............................ CGCGTCGTCGAGTTCGGTGACTCGCGTAGTGAG 152248 28 100.0 33 ............................ CCACGAGCGGTTCAGCATCGACCCCCGGTACGG 152187 28 100.0 33 ............................ CGTAGGTGGCCCACGCCGACCCCTCGACGGTGG 152126 28 100.0 33 ............................ GATGTTCGTGCTGCAGGTGCCTTTGGTGATCGG 152065 28 100.0 33 ............................ GGGGTGCCCCTCCGAGGCGCAGCAGCGCCGCCA 152004 28 100.0 33 ............................ CATCCCGACCTGGAGCAGCGCGATGCCGGCCAG 151943 28 100.0 33 ............................ TGTGGAGTAAGCCGATGAGCACCGCGAAGACGC 151882 28 100.0 33 ............................ GTCCTTCGACAGCAGCGGCACCTTGCCGGCCTC 151821 28 100.0 33 ............................ GGCGCGCAGGTTGCGGTACTTCTTGTGGACTGT 151760 28 100.0 33 ............................ CGTGTGGGCGCTGGAGCGGGGCGACAACGACAT 151699 28 100.0 33 ............................ GTGCCGGCCGGTGACGTCGATGTCTTGGACGAC 151638 28 96.4 33 ............T............... GTCGCCTCCATCGGCCTCGGGGATGCCCTCGGT 151577 28 96.4 33 ............T............... GTAGCAGGGGAGGGAAGGCATGGGGACGTTCGC 151516 28 96.4 33 ............T............... GCGGTCTGTCCACGCCTGCACGTGCATCTCCTG 151455 28 96.4 33 ............T............... GTAGCCCCGGATCCACTCCTGGCGGATGGGTGC 151394 28 96.4 33 ............T............... CGCGTTCTTCTCCGACCAGGTCATCAACGGCGA 151333 28 96.4 33 ............T............... CAGGGCGGCGGTCGTGCAGATCCACGCCTCATC 151272 28 96.4 33 ............T............... GCTCGCGTGGATCGCGGCGAAGCGGCAGGGGCA 151211 28 96.4 33 ............T............... CGTGTTAGCGTGCTGTAGCCCGATCAGGGCAAG 151150 28 96.4 33 ............T............... TCGATCATCGCGCTTCTGTCCGGCGTCGCCGGC 151089 28 92.9 33 .....T......T............... CGTGACCGTTCGGTTTCCGGCGGCGCTTTTCGC 151028 28 100.0 33 ............................ GGAGATCCCCGTGAAGTGCTCCCGCTGCGGCAA 150967 28 100.0 33 ............................ GGCGGCGCTGTGGTCCGGCGCTGACGTCTACGT 150906 28 100.0 33 ............................ CCACCACCACGCCGCCTCCAGCGACGTCCCACC 150845 28 92.9 0 ............T..........A.... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.3 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GACGTGCCGTCACTCTGGACACGGCCCAACGCCTGCATACCTCCGACTCAGGGGGCAGCGCCGCTCCGGGTGCTAGCTCCCCGGCCTGGATCGACTCTCGCAGGGTCTGGGCGATCTCGCGATAGCCGGCACCTGAGACGCCTCCGGTCTTCACAGGTCTCCTCGCTGTCGTCGTGTACATAGATCAGGCTATGCACACGAGGAGCAGCCGGCCACCGTCCGGCGCGCTCGCCGGGTGGGTGAGGTGTGACCGCGTGCCGCATTCGTGTCGTCGTGTCCGAGATCACCAGCGTTCGCGCTGGTCAGCGTCCTGAATGACGTGGGATTCCGTTCTTCGGCCTGCCGCGCGGCTGTGCGGTCACCGGGGCGCGGGGCGCGCGAAGCGCGGCGAGTCAGCGGTACCTTGTCACCATCAAACGAGCGGCGCGGGCGGAGGGATCTTGGTCGGGGAAGTGAATGAAATCGGCATTGTTGATCTTTAGCGGTCCAGGTCAGGAAGT # Right flank : CATGTTCCGGATGTCGGCCGGAGTGAACGTCTACCGTTTTTCGCGCTCTACCTTCGCTCCCTCCATGTCGTGTACGTGTCGGCTGTCACCGATCAGGTGCCATCGGGGCAGGTCAGGGCCGTGTAACTCTTGGTCTTGAAAACCGGTAAGGCAGCGATGTCTTCGTGGGTTCGAATCCCACACCCTCCGCTTCCTGGGCAGCGAAAATACCCATGAAGTGGTGCCGCGGCGCGGTGTGGTAGACCGCCATATCACGGTATGGTGATTGTATGGCTGCTAGGAAGATTACCGTCACCCTCCCCGAAGAGTTGGTCGAAGCGCTCGGCGCGGCCGCTAGTGAGGATGGAGTGCCGCTGTCGAGGCTGGTCGCCAGCGCAGCGGAGAGCGAACTCCGGCGGCGGGTGGGTCGACGGTTGGTCGCGGAGTGGCAAGCCGAGCACGGAGCGTTCACGGTGGAGGAACTCGCCGCAGCGCGCGCCGAGATGGCCGCCGCCGACGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 894214-893270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 894213 28 100.0 33 ............................ CAGCTCGTGCACCTCGTCGAGCAGGATGAACAC 894152 28 100.0 33 ............................ GGCGGTGAGCAGGGCGGCCCGGCGGTCGCCGTA 894091 28 100.0 33 ............................ GCTCCGGGCGCGCATCGGCGTGTCCCCTGGGAT 894030 28 100.0 33 ............................ TCACGGCCGTCGTTAATCCACAGCCCTCCCTGA 893969 28 100.0 33 ............................ GTGGGGCATCCCCATCCACCACGGCCCCGGCAT 893908 28 100.0 33 ............................ GCGGTGGATCACCCACGAGGTGCTCCCGGCGAT 893847 28 100.0 33 ............................ CAGGTCGACGACGTCGACATGGAGCCCTGCAAC 893786 28 100.0 33 ............................ CGGTGGGGACGTGTTCTACCGGGGCCGGCGTAG 893725 28 100.0 33 ............................ CAACAGCGCCATCTTCGACTTGCCTGACTTTTT 893664 28 100.0 33 ............................ CCACGGCGAGCGATCCACCCCCCTACCCCTCAG G [893647] 893602 28 100.0 33 ............................ GTCGAGCAGCGCCTTTTCGACGTCGAATCCGGT 893541 28 100.0 33 ............................ CGCCCGCGACCGCGAGCGCGTCGCCGGAGAGAT 893480 28 100.0 33 ............................ CGCGCACAGCCATTGGGCCACGGTGCCGCATCC 893419 28 100.0 33 ............................ GTCCATCGACCGCCGCAGATCGCCCGACTCGAA 893358 28 96.4 33 ................T........... CGCGATCAGCCACCGGCCCAACCGCGGGAACCG 893297 28 89.3 0 ......................C..A.T | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GGCCCCACCGGGCAACGGCGCAGCGATCCGCCGCCGGACACTTTCCGGCAGCCACATGTCCCACAGCAGGCCGGCGACATCGGCGCTGTCGGCGAGGTGACGATGGAGCGGAAGCCAGAAGCCCCGATCGCGGTTCGTCTTGCCCCAGACAAGACGGGCACTCTCGCTGAGACCAGGTTGGTCGGGCACGGGAGGGATGAAAACAGAGGGGTACGACACCTGACGACCAACTCCCAGGGGCGACTTGCAGGCCGAGCTTTCAGCATCGAGAACGACGCTCATGTACGTCCGGACGCAGCCTGGTCGGAGATCGAGCCAGATTCATCTGGCCACCGGAACCCCTCCCTGTCGGACACCCTCACGGGGAGTCCATCGGTACGCTGAGTCGGCTGCGACTCACACCACTCCAACCGAAGCGCTCGATTGCAACGGCGATGATCTTGAGAGGCAAAGTGAACGAAAACGAGGAAGTTGATCTTTAGCACTGCTGGTCAGGAAGT # Right flank : GCGGCATTCGTCGTCCGGCATCCGGCCAGGCCGCGCCGCCTCACGCACCACCGTGCTTGCACCTAAGTGCTGCTAGCCCTCAGCGACGAAGACACCTCGGCCGGGGCGGCCCACCAGGATGCCCCGCTTCCGCAGGGTCGCCCAAGCTCTATTGATGGTGGACAGCGACACGTCGTACTCGTCGGCCAGCACATGACCGGGCGGCAACTGGGCGCCAGGAGCCCACTCCCCCTCGTCGATGCGCCTGACGAGATCCTCCAGCAGCTCGTTCATGGTCGGCGGGATAGGCACGAGCACCCCTTGCAGTCGGTTGGCTCTGCCAGTATCAATCCACCTCCTGAGACAGGCAAAACACCTAAGGCATTTGGCAGTGCTGACATAGGTGAAGACACTGCGACGACTCTTGACATTGCTCCTGACGGTCCGTACGGTCGCTTTCAGTGACGCGGTACCTGCGGTCGGTTGGCGCTTGCCGTGGTGGTGGCCCGTCACGTCAGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 904007-905498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 904007 28 100.0 33 ............................ CTGCGTACCGGGCGCGCAGGCGCGGGCCCTGGT 904068 28 100.0 33 ............................ GGCCAAGAGCACGCGGACCACGATCGATCTGGC 904129 28 100.0 33 ............................ CACGACTCTGATCGGCCTGGAAATGGAGATGTG 904190 28 100.0 33 ............................ CGCCTCGTCATCGACGCTCTGAGCGCCGACCTT 904251 28 100.0 33 ............................ CGGCACGCACGCCGTGAACGGCACCACGCCGAG 904312 28 100.0 33 ............................ GCGGGACAACTTCGGCAACCGGCCGGCCGGTGG 904373 28 100.0 33 ............................ CTGGCGGTCCCGCCACGGCAACCGCCTACGCGC 904434 28 100.0 33 ............................ GGACCTGGCCGGGCAGCGCCTCGGCGTCGACAT 904495 28 100.0 33 ............................ CCACGGCGACCATGCGGCCCCAGGTCGCGGCGG 904556 28 100.0 33 ............................ CGCGCTGAACCCCGCCATGCCGGCCGCCTACGC 904617 28 100.0 33 ............................ CGCGGCCGACCGGGTGCAGGGCCTGGTGGTGGT 904678 28 100.0 33 ............................ GCACGGCTCGACGCCCCAGCAGCCCCACCACAC 904739 28 100.0 33 ............................ CGCGGCCCGCTTGCCGAACACGTCAGCCCGCCT 904800 28 100.0 33 ............................ CGGCCATCACGCGGCCCGGTGGCGGCGCTTGAA 904861 28 100.0 33 ............................ CCTGGTCACGGACCAGCTCGCCGTCCAGCTCGG 904922 28 100.0 33 ............................ GAAGATCCAGATCGTGCGGTACGCCACGATGAC 904983 28 100.0 33 ............................ CCGCACCCACACCCGCGCCCGGGTGCCGATGAC 905044 28 100.0 33 ............................ CGGCGTGCACGCCATCACGCAGAAGCCGTTCGT 905105 28 100.0 33 ............................ CGACCCGCGATGGGTGCCGGCGGTGCGACGGCT 905166 28 100.0 33 ............................ CGTCGGATCCGCCGGCGGCCCGTCCTCGGCCGG 905227 28 100.0 33 ............................ CGTGGCTCGAAGTCACCGCGGTGATCAACCTGC 905288 28 100.0 33 ............................ CGCGACGTGCGCCCCGTCGATCACGGCGAATCG 905349 28 100.0 33 ............................ GGCGTTCGCGGCGACCGGCCTCTACCCGATCTA 905410 28 100.0 33 ............................ CAGGTCCGGGCGCTCGGCGACCACCTGGGCGTC 905471 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGTGGGACGAGGGAGGCTACGAACTCGCTGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCGGAAGGGCTGCGTGGGCACCTGACGCAGTGGCTGCTGGAGATCTCTGCCGGGGTGTACGTGGGACACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCCAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACAAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCACGCTCATGCGTCGGCCTACGGATCGGAGTTCGTACAACCCAGCAGTGGGGCGGGGATGGAGCAAGGCGTCCAAGCGTCGGAAGTTCGGGCGGAGGGCCCCAGATGGGAGCAGCGGATCGTCGGTTCCCTCCGAACAAAGTGAAGGAAATGGCGGTAGTTGATCTTTAGCGCCCCAGCTCAGGAAGT # Right flank : CTCAGTACGTCATTCGGAAGCTCAGGGCCGCCTGATCACTGAACGCTCGGCGCGGTGCGTAGTCGCTACATGCCGTCGTCGTAGCGTCAGCTCGTGGCGGTACGGTGACCTTCCGTGGCCCGAGCGGGCCGCGCTCACAGGGAGGTGTGCGATGGGAGCGCCGGACGTGGTGGCCCTGCCGGTCGCGGCGCAGGCCGAGGTAGACCGGCCACTGTTCACCTTCTGCGACGACGCGACCGGTGACCGGGTCGCGCTGAGCGCCGCTGACCTGGGCGGCTGGGCGGCGCGCACCGCGGGGCTGTTGCGCGACGGCTGCGGGCTGGCCCCGGGCAGCCGCGTCGCGGTGCTGCTGCCGCCGCACTGGCGTACCGCCGCAGTGTTGTTGGGCGCCTGGTCGGTGGGGCTGGCCGTGTCGTTCCGGCCCCGGGCCACCGCCGGGTTGCCGGTCCTGGAGCCGGGCGGCGACCGGCCGTACGACGCTGTGTTCGTCACCCCGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 2142019-2142657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2142019 28 100.0 33 ............................ CTGGGCGGCGTCGTACAACAGCCTCTATCGGCG 2142080 28 100.0 33 ............................ CAGGGCCGGCGACGCGGCGTTCCACGCGGCAGC 2142141 28 100.0 33 ............................ CGCCCTCAACTCGGCGGCGACCGCAGCACCATT 2142202 28 100.0 33 ............................ ATGCCCTATCTCGCGGCAGGCGGTATCGCTATC 2142263 28 100.0 33 ............................ TCGAATGGCGAAGGTGGAGGCGTTTCTCGACCG 2142324 28 100.0 33 ............................ CGGCACCGGCAAGGCCGCCCAGGCCGCGAAGAA 2142385 28 100.0 33 ............................ CGGGATCGTGTCGGTCGTGACCGGCGCGATCAA 2142446 28 100.0 33 ............................ CGGCAGGTCGCCGAGGCCGAGGGCCTGGACGCC 2142507 28 100.0 33 ............................ CGGACGCGGCGCCATGGTGGCAACCGCCCAGTG 2142568 28 100.0 33 ............................ GGTCACTTCCCTCACGCCGTTGGCGACGGACAC 2142629 28 92.9 0 .......................A...T | T [2142651] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CTTGATCCCTGCGCGGGCGGGCCCCGGCGAACCCCTGACGTGCTAACGGTCCGTACGAGCACTCTCTGGCGGCGGGCTTGGCAGCCGGGGAGCAAGATCGTGCTCGATCAGGGAAAGAGTCCCCATACTGCCGGTGGGAAGCCACACTTTCGTGGATCGAGCACGATCTTGCGCGCTTGCCCCGCCCAAGGGCGGCTTCGGGATGCCGCCCGACGCCGGAACTGCGAGATCTTGGAAGAAGGTGGCCCCTCTGAGGGCCCAAATCTTCCAAGATCTATGCGGACCTCGCTTGTCGGCAGCGACGCGATCCGTCTCTGGTGGCGGCGATCCTGCTGCCTACTGTCTGAGGGCGGGTGCTGTGCTTCTCCCAGACATCGACATGCCCGTTAGGCTGTCTTCGCTCTACTTGCCTCAGAAGTCGACTCTCGCAGGAGGCGATCTTGTGGTGCAAAGTGAAGGAAAACGAGGTAGTTGATCTTTAGCGCCCCAGGTCAGGAAGC # Right flank : TTCCAGCGGCCCGCCTGGCTGGTCTAGCCAGTTGTTCCTGCGTGGGTGCTAGATGACATGGACTCTTGCGGATTACCTCGGCGGCGCAGGGAGTAGCCGGTGGAGCGGTGCGCGGCTGCCGTGGCGCTCGAATCACCACCGCCTGCGCGCGGAGCGGGGCCAAATGCAGCCCTGCCCAGCCGGCCGGTCGGGATCACCCCCGCGTGCGCGGGGAGCAGCTGGGCATCACCGTCTACGACGCCCAGGGCCAGGGATCACCCCCGCGTGCGCGGGGAGCAGGGGACGGCCTGGGAGGTGCCCTGCACGACGTAGGGATCACCCCCGCGTGCGCGGGGAGCAGAGGAAGTCCCCGACGCCCTTGAACTCCGCCACCGGATCACCCCCGCGTGCGCGGGGAGCAGGTGTGTACCAAAGGTGAATGACATGACTTCATCGGATCACCCCCGCGTGCGCGGGGAGCAGGCTTGCTGACCTGGGGCGCTAAAGATCAACTACCTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 5 2143119-2142726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2143118 28 100.0 33 ............................ GATGAAGTCATGTCATTCACCTTTGGTACACAC 2143057 28 100.0 33 ............................ GGTGGCGGAGTTCAAGGGCGTCGGGGACTTCCT 2142996 28 100.0 33 ............................ CTACGTCGTGCAGGGCACCTCCCAGGCCGTCCC 2142935 28 100.0 33 ............................ CTGGCCCTGGGCGTCGTAGACGGTGATGCCCAG 2142874 28 100.0 33 ............................ CGACCGGCCGGCTGGGCAGGGCTGCATTTGGCC 2142813 28 82.1 33 .C.....G......G....T......T. GAGCGCCACGGCAGCCGCGCACCGCTCCACCGG 2142752 27 78.6 0 ..A.....T....-...C.A...A.... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 94.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ATTGGCAGACGGTAGCTGGGTGGGACATATCGACAATCAGCTTGGCGGCTCAGTGGTCAACGGGGACGAAGGAGTGGCTACCCTTCTGACAAGGTGGGAGGGCGTTCGGGGACTCGCCCTTCCGCGCAACCTCTCGGGTGCCCTGGTGAAGGAAGTAGAGAGCCAACATGGACCTCAGTAGCGCAAACTGGAAGAAGTCCACCCGAAGCAACACCGCTGGCGGCGAATGCGTTGAGGTGGCCGACAACCTGACCGGTGTGGTCGCCGTCCGCGACAGCAAGGACCCGTCGGGTCCAGTGCTCGCCTTCTCCCCGCAAACCTGGCGCGCGTTCGTCGAGCACACCAAGCACCCCTAGCCTCGCCCTGGCCCGCGCGCGAGGCCGCCCGCTGACAGCGCAGCCTCGCGTGCGCCGCCGAACGGTCGCAGCCAGGAGGCGATCTTGTGGTGCAAAGTGAAGGAAAACGAGGTAGTTGATCTTTAGCGCCCCAGGTCAGCAAGC # Right flank : GCAAGAGTCCATGTCATCTAGCACCCACGCAGGAACAACTGGCTAGACCAGCCAGGCGGGCCGCTGGAAGATTAACCCCCGCGTGCGCGGGGAGCAGGTGTCCGTCGCCAACGGCGTGAGGGAAGTGACCGGATCACCCCCGCGTGCGCGGGGAGCAGCACTGGGCGGTTGCCACCATGGCGCCGCGTCCGGGATCACCCCCGCGTGCGCGGGGAGCAGGGCGTCCAGGCCCTCGGCCTCGGCGACCTGCCGGGATCACCCCCGCGTGCGCGGGGAGCAGTTGATCGCGCCGGTCACGACCGACACGATCCCGGGATCACCCCCGCGTGCGCGGGGAGCAGTTCTTCGCGGCCTGGGCGGCCTTGCCGGTGCCGGGATCACCCCCGCGTGCGCGGGGAGCAGCGGTCGAGAAACGCCTCCACCTTCGCCATTCGAGGATCACCCCCGCGTGCGCGGGGAGCAGGATAGCGATACCGCCTGCCGCGAGATAGGGCATGGAT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 6 2675773-2676596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSX01000001.1 Micromonospora haikouensis strain JXNU-1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2675773 28 100.0 33 ............................ CTACGCGGAGATCGACGAGGTCAACCGAGAGCA 2675834 28 100.0 33 ............................ GGAGGCGGCGGGGGCCGCTTCTGCGTGTCCGGG 2675895 28 100.0 33 ............................ GTGGCGCGGCGAGTACCTGCGCGCGGTCGCAGA 2675956 28 96.4 35 .........A.................. CAACCCTTGGGCCTGCTACAGCCCCAGGATGCGAC 2676019 28 100.0 33 ............................ CGCTCCAGTCTCGCCGGCGGCGAGGGACTGCGC 2676080 28 96.4 33 ..............T............. CCCGCCCGGGCCGAGGACGGCCAGGTGCCACTC 2676141 28 100.0 33 ............................ CGGCGTCCAGCGCGCGTGGTCGGCTGGCGTCGA 2676202 28 100.0 33 ............................ CTCGTCGATCACGGTCACGTCGAGGTCGTCTTG C [2676218] 2676264 28 96.4 33 ......T..................... CGTCCCCATGTCCCCGAATTCCGGCAACCCCTC 2676325 28 100.0 33 ............................ GCAGATGTGGGGCGTGGTCGACCGGACCCGCTT 2676386 28 100.0 33 ............................ GTGGGTCGCCCACTCCTCGGCCTCGGCGATCGC 2676447 28 100.0 33 ............................ GGAGGTACGCCATGCCCCCGTTCGTCACCACCT 2676508 28 100.0 33 ............................ CACCTCCAGCGCGGTCTGCGCCCGGTTGGTGCG 2676569 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 14 28 99.2 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGACCAGCTCACCCGGCAGAAGCTGCTGGTGCAGATGCAGGCGTTCCTGGCCCGCTGGGGCGACGACCGGCCCGCGCCGGTCGACGCGCCGGTGGCACCGACGCTCGACGCGGCCAGCGATGCCGAGCTGTTCGACTTCATCCACCGGGAGCTGGGCGGCCCCGACGGCAACCTGGGTGGAGGCTTCTGACCGATTCGACCGCCTGGTGAGGCTTCCGTTGGCGGTCGTTGTGGAGAACGACAGATAGAAGCCAGGCCGCCCCTTGCCGGGTGGCCTGGGTTAGGGCTGCCTCCGGCGGGGGCCAACGACTCCAGGATGGAGTTGCCGAACGGTGGCAGTCGTGGGTGGTGGGGATGGTAGGAGCGGGGGCGAGTGCGCGCCAAGCGCGGCAAGTCAGCGGTACCTTGTCACCAGCAACCGGCGGACGGGTGGAGGGATCTTGGGCGGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGTGCAGGTCAGGAAGC # Right flank : CGCGTTTGGGCGTGACCGAACCAGGGCCGATGCGAGCTGACAAGCGCCGACGTTCCGACCATGCACGGACCTATTCGACCAGCCATCCATGATCTTCTCTCATCGTACTGACCCGATCTGCTCGACCTGGCGGGTGAACTGCTCTTGGGGGATCTTGGACACCTCCTGTCTACATGGGACGATAAGTGTCCAAGGTTGTCGGGGCGGGGTGACTCTTTATGGGCCGGTGCAGCACCCATATGGCGATGACGGCGACGAACTGTCCTGAAGAGGGCGGCGCTTCATTCGAGTCGTGGCCCGTCCGGCCGCCGTTGTGGCTACTCAGCTGAGGCAGCCGTCAACAACCAGGAGGCCACAACACCATGGCCGACTACATTTTCAGCGACGGCCCTGGCATGAACGCTGTCATCATGGCGCTCGCCGACGCCCTCTACGAGGCGGCGACCGACCAGGGAGCGGGCGCGTGAGCGGGGCAGCCTCGGGAGAGGACCACGCGGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //