Array 1 88351-89355 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYX01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2801 NODE_3_length_181729_cov_1.98427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88351 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88412 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88473 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88534 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88595 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88656 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88717 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88778 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 88840 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 88901 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 88962 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89023 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89084 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89145 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89206 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89267 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89328 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105488-106964 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYX01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2801 NODE_3_length_181729_cov_1.98427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105488 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 105549 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 105611 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 105672 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 105733 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 105794 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 105855 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 105916 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 105977 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106038 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106099 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106160 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106221 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106283 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 106344 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [106386] 106386 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106447 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106508 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106569 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106630 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106691 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106752 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106813 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106874 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106935 29 96.6 0 A............................ | A [106961] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //