Array 1 1809969-1805759 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ034040.1 Bifidobacterium asteroides strain Hma3 Hma3_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1809968 32 100.0 34 ................................ CATCCTACTGCTTGCGTCTGCGATGGTCAGGATA 1809902 32 100.0 34 ................................ TCCAGCAAGGAATTCCTGCACGACCCGACCACGG 1809836 32 100.0 35 ................................ CGTTGGAAGGCTGAGCATTTTCGCACCCACTGGTC 1809769 32 100.0 35 ................................ ACCATTGTCCAGGTCTTCCAGCACTTCGATGGCAT 1809702 32 100.0 36 ................................ TGGAGACCCGTGGTGTGGACCGCTTCCATCCCACCT 1809634 32 100.0 34 ................................ CAATCGATCCGCAGGGCGTTCGAACGGCATAATC 1809568 32 100.0 33 ................................ TTCGATTTTTCAGGGAAGAAAACCAAGGCGCAG 1809503 32 100.0 35 ................................ GCCAGGGTGCCCACCGGGGCTAAGACCTGCGCATG 1809436 32 100.0 34 ................................ CTTTATGGCCACATAGGCTGTTTTCCCGTCGAAA 1809370 32 100.0 35 ................................ TTTGTAATGCTCATAAGGTGTGTAAGCCCACCAGC 1809303 32 100.0 35 ................................ CTCTGGGAGCGTCGGCACCTGGGATAGCCACAAAT 1809236 32 100.0 34 ................................ TAACACTTAGACTTGGGAATGTCAAAGCTGGATG 1809170 32 100.0 34 ................................ ATCCACGCTGCGATCCTTGAAACGATCAGCCAGC 1809104 32 100.0 34 ................................ TGAGCAGTTGCGACGTGGGCGATATGGTCAGAGT 1809038 32 100.0 34 ................................ TCGCCCTGTGGTCCGGGTGCGCCATCCTCACCGG 1808972 32 100.0 34 ................................ CTGCTGGCAGCAGCCATAGGCATCGCCTGGGCCG 1808906 32 100.0 35 ................................ ACCTCGCCCTGCGCCTGCAGCTCCTTGAGCTTGTC 1808839 32 100.0 34 ................................ TCCGATGCGCCAATGTATGAGCACAGCGAGTCAG 1808773 32 100.0 35 ................................ TCGGAGATCGGCGACATCCACGACCGCAAACGGTG 1808706 32 100.0 34 ................................ GCTATTTAGGTAGGCCCTGTGCCCATCTACTATC 1808640 32 100.0 35 ................................ CAGGGCTTATAGACTCCAGTCACGATGACCTCATC 1808573 32 100.0 35 ................................ TCGCGCCTGGTCAATTAGGAGGAACAATGGCATAC 1808506 32 100.0 35 ................................ GATATCTGATGGGCTGTGGCCACTTTTGCGGATTG 1808439 32 100.0 34 ................................ CGGTCTGGTGGGCATCAGAGCAGCTCGATGCCCA 1808373 32 100.0 34 ................................ TGGTCGGAGGCAGCCCCTGCCAGTCCTTCAGCAT 1808307 32 100.0 34 ................................ TACATGAACGGGAAGATCAAACAGCTGCGGGCCT 1808241 32 93.8 34 .....C.................A........ ATCCAGGGAGTCATCAATCGCATGGCTTCCAACT 1808175 32 100.0 34 ................................ CATGAGCCATGTATATGAACAGTGAACTCAATGG 1808109 32 100.0 33 ................................ ATCGATACTCTGATCCTTGAGACGGTCGGCCAA 1808044 32 100.0 34 ................................ ATGGTGGCTCCCCTTATACCTACTATATTGATGA 1807978 32 96.9 34 .................G.............. TGCCCATGATGCCTCCGATCTCAAAATGTATACT 1807912 32 100.0 35 ................................ CAGCTTCTGCCCGCGACATATCCGGTCGGAAGTAG 1807845 32 96.9 36 .................G.............. TCGGTGAGCTTGGCTGTGAGTATGGGTGGGGTGCTG 1807777 32 96.9 36 .................G.............. CGTTTCGGGCGGCTGCATTAGCCCAGCCGGACCCGT 1807709 32 96.9 34 ......................A......... CAGGCCAATCTCGAGCGGATACCTGCAGGCCTGG 1807643 32 100.0 33 ................................ TCGCAGTGGGATATACCTAAAGGTGGGGATGGA 1807578 32 100.0 34 ................................ GCAGACCATCAGCACCGGCTATGAGATCGCTGGC 1807512 32 96.9 34 ......................A......... CAGGCCAATCTCGAGCGGATACCTGCAGGCCTGG 1807446 32 100.0 33 ................................ ACCGCCCGGATGCGCTACTGGTGCACCGAGGCG 1807381 32 100.0 34 ................................ GTTTTTGGCCGGTTTTGGCTTGATTGGAGGGATC 1807315 32 100.0 32 ................................ AGCAGGTCAAGCTGTCCGCCGCTACCTATGAG 1807251 32 100.0 34 ................................ AGCGTGCCCGAAATGCAAGCCATGCTCCGCGTGG 1807185 32 100.0 34 ................................ AAAGATATGACTTTGCCGACCGGGTGTCAATTTG 1807119 32 100.0 36 ................................ CGCGACCCTCGGCCAGGCCGTCGAGATTGCACGCAT 1807051 32 100.0 33 ................................ TTCTCAGGGGTCTGGGACGGTATCAAGAATGGC 1806986 32 100.0 34 ................................ TCGTATGCCTCGGCCGTAGCACTCCCGTGCACGT 1806920 32 100.0 33 ................................ ATGCGCTGCTCTTTGACCCGATCCTGGACGCTG 1806855 32 96.9 34 .......................T........ CATATGTTGTTCCACACGTTTTGGATTGCTTTTA 1806789 32 96.9 35 .................G.............. CTCTGATTCGGCGGCATCACGGGGCTTTTCATATA 1806722 32 100.0 34 ................................ AGGGGGCATGGCGGGAATGAAGTTGAAGTTAGAT 1806656 32 100.0 34 ................................ TGGCCTCCTCCGAACCGGCCAACCGCGTAAGCCT 1806590 32 100.0 35 ................................ TTTATAGGTATTTAATGCGTTGTCGGTGAGCGAGT 1806523 32 100.0 35 ................................ CTGGGCTCCAACCTGGACGACTTGCAGCAGCCGAC 1806456 32 100.0 36 ................................ GCAAAGGACGATGAGAAACTCAGTGTCGGTGAACAG 1806388 32 100.0 35 ................................ AGCACGAAGTGTTATGACTTGGAAGCTGGAGAGTA 1806321 32 100.0 37 ................................ CTCAGCAGCACGGATCACCTTGGCGGGGAGTTCACGG 1806252 32 100.0 34 ................................ AACTGCTCGAAAGTCACGTGCTTATCGGCTTTGA 1806186 32 96.9 35 ..........C..................... AATATGGAGCAGACCGGTATCGGCACGAAGATGAT 1806119 32 100.0 34 ................................ CGCGACGAAGTGGGCGTGATGATCGGCCGGGGCA 1806053 32 100.0 33 ................................ GAGGCCAATCTCGAGCGGATCCCGGTCGGCCTG 1805988 32 100.0 33 ................................ GCGGCCGCCTGGCAGTACTCCTCCTCCGGGCAT 1805923 32 96.9 34 ........................G....... ATCAATGCAAAGGCAAAGTTTTCACCATCCATGG 1805857 32 100.0 34 ................................ GCCCAGTCTTGGGCCCACTAAGGCAATGAGAACG 1805791 32 81.2 0 .A.....T....GT.....T........G... | G [1805762] ========== ====== ====== ====== ================================ ===================================== ================== 64 32 99.2 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : TCCATTACTACGGGGTGAGGCGTCATATCCCTGTTGACCAAGTGATGATGTTATAGAGTTATGTGTCTTTGGTTGTACTGTTTTGTTTGAGCCACGGAAATTAGACGATAGCTAAGTGGCTGGTGTAATTCTGTAAACGGTGCAGTATGTTGACTGTTGTTGTGGATCATCGTTGGCGCGAAACGCTAGCAATCATGTATTCACCAGATCCTTCGCGCCGCAAAACTTTACTTCATGACGATATACGGTCTTAATTTCACATGTTTTTGAGCTGAGTTCTTTTCGCATTTCAAATCAGACAGCTATTCATACGAAGGAAGCTAGAATTTTAGTGAATCGGATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGCATCATCTCAATTGCTCAACTAGAAACAGAATCTGGGTACCTGGTTTGGGCTGTTAGGAGTCGTCAGCCATTTAAAGCTGATCATATATTGGTCATCGGATGTATCATTGTGCT # Right flank : ACCGCTACGAACGGCTCTCTGCTTGCGGCAAACGCATTGCCTCCTACGTGGATTGCCTCCTACGTGGAAGCCTAAAAACGGAAAACTAATCGCGCTACTTTGAATTAACCAGACAGCACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTCAGAACTCTTTTATAAATTCTGCTCCTTAAAAACATGAGTATGAGTTGCTGCTTTGGCATAGTACCGATCATTTTCATCCCATTCTCCCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTATGCGATGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCGGGTGGCGCGGAATCTGGCAGAAGCGCTTCAGCCGGTTCTGCATCTGTGACATCGCACCTGGATGACGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //