Array 1 852989-854344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020403.2 Pasteurella multocida strain FDAARGOS_216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 852989 36 100.0 30 .................................... GATAAATGTTCGTGGTGGTCAATATGGTAG 853055 36 100.0 30 .................................... AACTTTATTCCATCTACTCGGGTTCCCCTC 853121 36 100.0 30 .................................... CAAATTTGCAAATACAACACTAAACATGGC 853187 36 100.0 30 .................................... TGTCTGCGCTTGAATTTGTCGCGTTTTCCG 853253 36 100.0 30 .................................... CATGGAGCAAAGGGATGTCAGTTAGACCGC 853319 36 100.0 30 .................................... ATATGACGTTGTGCTACCTCTAAAGCAGTT 853385 36 100.0 30 .................................... GAAATGCTCGTTGAACTAGAGCAATTTGAA 853451 36 100.0 30 .................................... ATTCTGACACACTTAACTTGAACCAAGTTT 853517 36 100.0 30 .................................... AAAGAATACACCCTTATTCCAAAAAGTTTG 853583 36 100.0 30 .................................... TGTAATCATATCTTCTGGCGGTTGTCCCGG 853649 36 100.0 30 .................................... GAACGCACAGGTGATAAAAGATTTACCAAT 853715 36 100.0 30 .................................... CTGATATGTCTTTACAAGATAACTTTCACG 853781 36 100.0 30 .................................... ATTTTTTTAATGAAAGATGAAAGTAATTAT 853847 36 100.0 30 .................................... TTTCAAGGTACAAACGTTGATAAACGTAGA 853913 36 100.0 30 .................................... GTCTGAACAGTATTAACACTTCCTGTTTCT 853979 36 100.0 30 .................................... GGGATTTTGTGTTAATTCTTTATTGTTAAA 854045 36 100.0 30 .................................... TTTCAGCATTTTGTTGCACTAATTCTTTAA 854111 36 100.0 30 .................................... CTGATCTAAATTTATATAATATATAAGGTA 854177 36 100.0 30 .................................... CGTTACCAAGCAAACCCGCCATAGCGGCTG 854243 36 100.0 30 .................................... TTTAACTGATTGTTAAGAAAGGTAGAACAA 854309 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AAACTCCAGAGGAGTTAGGGCTAAAATCTACTATTGAACAATTAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAAAAATGGAGTTGATATAGAGGGGAATATCTATGGCTCGACAAGAAAAAGAGATTAGTCTAATAGATTACATTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAAAATAGAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1621064-1622951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020403.2 Pasteurella multocida strain FDAARGOS_216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1621064 28 100.0 32 ............................ CTTTCCATTCTAAGATAAATTGTTCAAGTGAA 1621124 28 100.0 33 ............................ GATGATTATTTCGTTGTGTAGTCACAACTGCTT 1621185 28 100.0 32 ............................ AAGCTGAATAAAAGCGCTAGCTTTTTCTCATT 1621245 28 100.0 32 ............................ TTCTGTCAATTTATTTTGAGCCAATCCCCCTA 1621305 28 100.0 32 ............................ TTCTAATTCCGGTTCAGATTCTGGTAATTCTT 1621365 28 100.0 32 ............................ CTTGACCCCTTCAAACAAAAAATATGTTATCG 1621425 28 100.0 32 ............................ TGTGAGTCAAGAGTTTATGAGAAAAACAAAAT 1621485 28 100.0 32 ............................ GCCGTTTTATCATCAATTCAAAGAAGGCTTGC 1621545 28 100.0 32 ............................ CGTAGAAGGTTCGATAATCCGAATTTATGTAT 1621605 28 100.0 32 ............................ AGATAGGGTAACGCTTGTTAATTGGTTCAGTA 1621665 28 100.0 32 ............................ AACTCCAAGCTGACTGTTGCGCTAGAGCTATC 1621725 28 100.0 32 ............................ AAAAACACGAAGGAAAAATGGCATTTGTCGAA 1621785 28 100.0 32 ............................ AGATGGAACACTTCTAATTACAGATGAAGAAA 1621845 28 100.0 32 ............................ TTTGGAATCGGTGGAAGTGGTCGCCAGTGAGT 1621905 28 100.0 32 ............................ TTGAAGAATGGGAAAAAGAAGATAAAGAGCTT 1621965 28 100.0 32 ............................ ATGAGTTGTTTCTCTTTCATCTAACACTTCTT 1622025 28 100.0 32 ............................ TATATCAAACGTCACTATTATTGGTTTTGTCG 1622085 28 100.0 32 ............................ CGCAGCACAACATATTCACGCCCACGCAACAG 1622145 28 100.0 32 ............................ AAGCTTGGCTTGATGCCATGAAAAATGCACGG 1622205 28 100.0 32 ............................ ATTGGCGAACGTTGAAAAAACGGCTCTTTTTC 1622265 28 100.0 32 ............................ CGTGACCAATATCAGCGTGGCCACAAGTGAAG 1622325 28 100.0 32 ............................ ACGTGTCGATAGAAATGAGTACAAGATGAGAG 1622385 28 100.0 32 ............................ AGTAACGCACAGATTAAAAATCTGCCGCTCTA 1622445 28 100.0 32 ............................ GCTTTTATGCCGGAACAAATGAATTAACTCGA 1622505 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1622565 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1622625 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1622685 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1622745 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1622805 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1622865 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1622925 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2191839-2193366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020403.2 Pasteurella multocida strain FDAARGOS_216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2191839 28 100.0 32 ............................ TTACGCTTACCCTCAATAACCAATGACTCATA 2191899 28 100.0 32 ............................ ACAGGCTGAAGAATACAGAAAAATTAAATCAT 2191959 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 2192019 28 100.0 32 ............................ AAAATAACAAAGGCGATATTTACGGTTCATCT 2192079 28 100.0 32 ............................ TGCTGCGTTATGTCCGATTTGCGCGAGTGCTC 2192139 28 100.0 32 ............................ TGCTGGTAAAGCCTATGTAGCAGTCCTACCAT 2192199 28 100.0 32 ............................ TATTTTGCGACCAGATTCAACCATGCCATTGG 2192259 28 100.0 32 ............................ GTTGCTGTCAACTGCTGATGATTTTTTACTAT 2192319 28 100.0 32 ............................ TGTTGGTAAAAAACTGACAGAAGTATTGATTA 2192379 28 100.0 32 ............................ ACGCTGTGCGGAACGCTTAACCAGCTCATCTT 2192439 28 100.0 32 ............................ ACCCAGTCACCACCCAAGCCTACAACAAGAGG 2192499 28 100.0 32 ............................ TCAGAACCAAAGTTATTCGTTTGATTAATTAC 2192559 28 100.0 32 ............................ CAATTTGGCGATGGTTACGAACAAAGATTAAA 2192619 28 100.0 32 ............................ ATCTGGATTGCAGGGGATTCAAGGTCTGCCCG 2192679 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 2192739 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 2192799 28 100.0 32 ............................ CTTTTTCCAGTCCAATATCCATGCCAGTGCGC 2192859 28 100.0 32 ............................ TGATAAATTGAATATTCGGGCCCGTAGTGCTG 2192919 28 100.0 32 ............................ TCACTAGTCATTCCCCATTGTGTTTTCCATTT 2192979 28 100.0 32 ............................ AAAACTGCGGGAATTTATTCAAAAAGGCTACT 2193039 28 100.0 32 ............................ GGCTGTTTCTAATATTGTTTTAATATCCTGTT 2193099 28 100.0 32 ............................ ATTGTTGCGCGATATTGAATGATAAAGCCCGA 2193159 28 100.0 32 ............................ TTCTTCTGCTCCGTTAATGTATCAACGCCAGA 2193219 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 2193279 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 2193339 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGATTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //