Array 1 76514-71922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHY01000018.1 Acinetobacter baumannii MRSN 3942 19_dA, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 76513 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 76453 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 76393 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 76333 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 76273 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 76213 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 76153 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 76093 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 76033 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 75973 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 75913 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 75853 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 75793 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 75733 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 75673 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 75613 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 75553 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 75493 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 75433 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 75373 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 75313 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 75253 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 75193 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 75133 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 75073 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 75013 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 74953 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 74893 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 74833 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 74773 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 74713 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 74653 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 74593 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 74533 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 74473 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 74413 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 74353 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 74293 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 74233 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 74173 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 74113 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 74053 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 73993 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 73933 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 73873 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 73813 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 73753 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 73693 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 73633 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 73573 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 73513 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 73453 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 73393 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 73333 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 73273 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 73213 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 73153 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 73093 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 73033 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 72972 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 72912 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 72852 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 72792 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 72732 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 72672 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 72612 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 72552 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 72492 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 72431 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 72371 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 72311 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 72251 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 72191 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 72131 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 72071 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 72011 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 71951 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //