Array 1 22659-20906 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBTZ01000071.1 Lacticaseibacillus paracasei strain L9D contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22658 36 100.0 30 .................................... CTCTGTATAAATCGTGTTCAGCATGTCTTT 22592 36 100.0 30 .................................... GCCATTAGGATATTGAATAACCAATCGCAA 22526 36 100.0 30 .................................... TGATCACCGTCTTGAACGGCCACTTGGCTT 22460 36 100.0 30 .................................... CGAGTCGGCACGGATTCAACATGCGGCACA 22394 36 100.0 30 .................................... ATACAAAAAAAATCATACAGCCTGCATCAC 22328 36 100.0 30 .................................... CACTTGATGCTCACGCCATCCCAAGCATTT 22262 36 100.0 30 .................................... CGGCATTGCCTCGGCGCATGGCTGGGGTGC 22196 36 100.0 30 .................................... AAAAACAAAAGTTCAAAAGCGTGGTTCAGC 22130 36 100.0 30 .................................... CTAAACGTTCGCGAACCTCATTCAAGCTAA 22064 36 100.0 30 .................................... ATGGATGATGCATTTGATCGACAGTGGCCC 21998 36 100.0 30 .................................... TTTAGTTAGTCGGTCAATGTCTGCTACTCT 21932 36 100.0 30 .................................... GTGTTAGACTTAGATGTGGATGTTGCCCCG 21866 36 100.0 30 .................................... ATACCAAGGCGGTGGCATGGCGTATACTGA 21800 36 100.0 30 .................................... AGAACTGGACGCCGAACGCTTGGACACGCC 21734 36 100.0 30 .................................... CCCTTTCGCCGCCATCTTTGATCGCCCACG 21668 36 100.0 30 .................................... GCTATCTGGCTTGAATTCCTTAATCGATTT 21602 36 100.0 30 .................................... AAGCCGATGATATAAAGAAAGACGCCCCTT 21536 36 100.0 30 .................................... GAGGCTTACCCCGTCTTTACCAGTTGGTCC 21470 36 97.2 30 ..............C..................... TTGTTCATAGCAGCGTTGGCACGGGTATTG 21404 36 100.0 30 .................................... ATGAAAGCCAGCGAAGGCACATTTTTTACT 21338 36 100.0 30 .................................... CGTGTTATTGTAATTAGTCGCCAAGTCTTG 21272 36 100.0 30 .................................... GCTGTCAAGTATCTCATGTCCTTCTAGAAA 21206 36 100.0 30 .................................... AACGTTGACCGCTCTGTCTCACGAAACTGG 21140 36 100.0 30 .................................... GAACTTTGTATCGTTTCTCTTTGCGCACGG 21074 36 100.0 30 .................................... ACGTTAAACGTACACCATGCCGCACAGTCC 21008 36 100.0 30 .................................... GACGATCTCGCACATGCTCAGTGATATGCG 20942 36 91.7 0 ..........................T..A....C. | T [20910] ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA # Right flank : CATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //