Array 1 6653-5350 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHRS01000052.1 Pseudomonas oleovorans strain PO_271 NODE_52_length_29744_cov_33.2848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6652 32 100.0 35 ................................ ACCCCCAGCACCTCATTCAAAAACGCCTGCATGTA 6585 32 100.0 36 ................................ ATCGTCTGCGCCGGCCTGTTCAATCCCGACGAACGG 6517 32 100.0 36 ................................ TACAATGGGCAATACACTAGGTTATGAGGGAGAGTC 6449 32 100.0 37 ................................ CTTGCCACATTATGCGCTTGCCTTTCTTAGCGTCTCG 6380 32 100.0 37 ................................ GTGCCGAGCAGGCGGCGCTTCGTGACGAATATAACGC 6311 32 100.0 34 ................................ AGCGCGGGCTATCGCTGATGTCGCAGGGCATCCG 6245 32 100.0 34 ................................ ACGGCCGACCCGGATGACGACACCGGGGCGAGCG 6179 32 100.0 34 ................................ CCGGTCGGCTCGCTGAGCTACCAGAGCCAAACGG 6113 32 100.0 35 ................................ AGGAGCTAGAGCAGCGCCGCGCCCGCGAGGCGGTC 6046 32 100.0 34 ................................ AAGCGCATGACCGCCGCGTCGGCCGTCATCGCCG 5980 32 100.0 36 ................................ CATCCCAAGCAGGTACAGTGGATGGCAGGGGTAATT 5912 32 100.0 35 ................................ GGCGTACTCGCTCCAAGTGGCCACGCTGGCCCACG 5845 32 100.0 34 ................................ AGGTACGGGACCAGAAGTGTCGCGAGCCACTCGT 5779 32 100.0 35 ................................ TCAACAACGGCCAGGACATTGCCAGCACCAACTAC 5712 32 100.0 32 ................................ GCACAATCGAGACCGACAGCGGTGCATCAATG 5648 32 100.0 35 ................................ AGCTATATCAGCTCGGCCGACAATGCGATCACCCA 5581 32 100.0 33 ................................ ATCGCCCCATCCTCGCTCTGTAAATTGCCGGTA 5516 32 100.0 35 ................................ TGCTTCGAGAACTACACCCGCACCGCCCAGGTGCT 5449 32 96.9 34 .................T.............. TGGTACTTGTACAAGAGCGGCGTTGACGAACAGG 5383 32 84.4 0 .............T........A..GCC.... | G,C [5353,5359] ========== ====== ====== ====== ================================ ===================================== ================== 20 32 99.1 35 GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Left flank : TACCCACCCTTCATCTGGAAGTGAGCCACGCCCATGATGGTTCTGGTGAGTTATGACGTAAGCACCGAAGGCGACGGCGCCCGCCGCCTGCGCCGCGTCGCCCGCGCCTGCCTCGACTACGGCCAGCGCGCCCAGTACTCGGTGTTCGAGATCGAAGTCGATCCGGCGCAATGGGCCATGCTCAAGAGCCGGCTGTGCGACCTGATTGACCCGGACGTCGACAGCCTGCGCTTCTACTTTCTCGGCAGTAACTGGCAGCGCCGTGTCGAACACGTCGGCGCCAAACCCGTACTCGACCTGAATGGCCCGCTGATTCTCTGAATTGCGAACCCCAAGCAGCCGACAAAACCCCGGCAGGTTCGCACGCTCTTTAAAAATACGGATGTTCTGATTTTGTGCGTTGGTACTGTTCTCAAGCAATCTGGCTAATGTGTCTTAACTTGCAGGTTCGCATAAATTAAGAATTTTCACTGGGCAGATCAGTGAGTTATAAGTGGGGG # Right flank : CCATGACCGTTCGTCGGTTTACATGTTGCCAGCTAGGGCCCTCGTACCTGAGTGCCTGCCGTGACCCTACAGGCAGGGTACTTTCAGTTTTAGGGGTATGTTTAGGGGTATGTCTCTTTGCTTGCTCTGGCTGATCGACCGGTTTTATTGATCTGTAGGCTATATCTTCGACTCCTGTCCCCGCACCATTTCCAGCAAAGGGTCAGCTTCGGCTGACCCTTTGTCGTATCAGCGCTGAAAATTCCCTCGCGTTTCTGTCAAAGCCGGTGTGATGATGATTTTCGGCTCAGGCGCGTGACGTCTGGCCCTGACTCAGATGGGAGTTGCTCATGTTCATTCGTTCCCTCGTATTGATCCTGGCGACGGCGTTCGTCAGCGCTGCGTTCGCTGATCAGCCGCAGACCATTCGGGTCATTCCCAAGAGCTACGTCAGCCCCGGTGCCAGTGGCAGCGTCTCGGGCTCGTCCAGTTATCAGCAGCACAATCTCTACGGCGGTCAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 14122-12446 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHRS01000017.1 Pseudomonas oleovorans strain PO_271 NODE_17_length_82401_cov_32.9595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14121 29 100.0 32 ............................. ACGACTACCCCGCCTAAACATCCACATCAAAG 14060 29 100.0 32 ............................. CTATCCATCTGGCTCAGCAGCGCCGGCACGAA 13999 29 100.0 32 ............................. GTATTGGCTGGCGTAGTCGATGGCCTGCGCTT 13938 29 100.0 32 ............................. CTGGTAGACGGCCGCGTGCACATGCCGCTCGA 13877 29 100.0 32 ............................. CCCAGGAGCTGCAGCCCATGGCCACCGACTAC 13816 29 100.0 32 ............................. TCATGGTCATCTGGCCCGAGTTCCAAACCTGG 13755 29 100.0 32 ............................. GCCTGCCAGCCAGCGCCGGGCCGCTGCCCGAA 13694 29 100.0 32 ............................. CAGCGGATGCACAGGGCAACCTGCGCGACATG 13633 29 100.0 32 ............................. CCATGGAATATGCCTTCGGGGCTGTCGCGTTT 13572 29 100.0 32 ............................. CGCATGGAGACCGTAGCGCCGGTCAGATCCAC 13511 29 100.0 32 ............................. TGGTGCTGCTTGGCCGCAAGAAGGTGAAGTTG 13450 29 100.0 32 ............................. CTGCCCACCAGAATCCGCGCCCGCGTGGAGTC 13389 29 100.0 32 ............................. TGAATTGCCAAAGCCCTCTGCGCAGGTCAGCA 13328 29 100.0 32 ............................. CCGGAGCTGTGAGGCCCGCCGTGGCTTGCCAC 13267 29 100.0 32 ............................. CGACATGGCGGGTAAGGGAACGGCAGTGGGTC 13206 29 96.6 32 ............................C GCGGCCAATGCTGTTGAGCGGGATGCGATGCC 13145 29 100.0 32 ............................. AGCGCCTTCGATTGACAGCCGCCCAGGCTGAC 13084 29 100.0 32 ............................. GCCTGGGACGTGGTGCGTAAAGGGCGCCTGGA 13023 29 100.0 32 ............................. CAAGCGCGGCAGATGGCGTTAGAGAGCGCAAA 12962 29 100.0 32 ............................. AATCAGCCGCTGCAACTTCTCGGCCCCTCAGC 12901 29 100.0 32 ............................. TCGAAGTGCTCGACCGTGACAACAAGACCAGG 12840 29 100.0 32 ............................. CTGATGGGGTTGCGGTTGAGCTGGTACCGGTA 12779 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 12718 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 12657 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 12596 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 12535 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 12474 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTCAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCACTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11717-9587 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHRS01000021.1 Pseudomonas oleovorans strain PO_271 NODE_21_length_70859_cov_38.2207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11716 28 100.0 32 ............................ AGAATCATCGGCTTGTAGGCGTTGGCTACGCC 11656 28 100.0 32 ............................ TTGTCGTACTCCCAGTCCTTGAGGATGTAGCC 11596 28 100.0 32 ............................ AATTGCCGCCACGGATCGGCAGGCGCTCATAG 11536 28 100.0 32 ............................ TATGATCCCGGTCTATTGGTATTGGTTTCCCG 11476 28 100.0 32 ............................ ACGACGACAGGAGCAAGCTTAGTAGGCTGAGG 11416 28 100.0 32 ............................ ATTTCCTCGCCCGCATCAACCGCGCCTAGCTG 11356 28 100.0 32 ............................ ACTCAGGGGAAAGCCCCGCCCTGGTGGCGAGC 11296 28 100.0 32 ............................ ACTTGTGGGGGCGCATCAGTGCCAGGCTGTTC 11236 28 100.0 32 ............................ AGCTCCTCATTAATCGGCACATCAACTAGCGA 11176 28 100.0 32 ............................ AGTGGCTAAACTCCAGCCGCAGGCTGTTGAGG 11116 28 100.0 32 ............................ GTGACCAGGCAATCACGCCTGCGCTCGCGCTG 11056 28 100.0 33 ............................ GTTGGCACTGCTCCCGGTTCGGCGCCTCTTGCA 10995 28 100.0 32 ............................ CATCAGGCCCCGTGCACTTAACAAAAGGCGCT 10935 28 100.0 32 ............................ ATGGACCAAAAGCGCATTTGAACATCCACCAC 10875 28 100.0 32 ............................ ACAGCGCGACCCGTGCTGACTGTCGTCTCAAT 10815 28 100.0 32 ............................ TGGTGCCGGCGGGCAGCTTCGCGCATGGCATC 10755 28 100.0 32 ............................ TTCCTCGACGATGCCACGATTCAGCTTGGCAG 10695 28 100.0 32 ............................ GATGAGAACACCCTTGTGGTGGGCATATCGAA 10635 28 100.0 32 ............................ CGGAGAGGTACCAGAGCCCGAGCGGGATCACG 10575 28 100.0 32 ............................ AGGAAGAGGTGGCGCGGCGCCTGGGTATCACT 10515 28 100.0 32 ............................ ATTATGCGATGCCAGTCCTAGACCTTCCCGAA 10455 28 100.0 32 ............................ AGCTGGTACTGGGAGGGGATCATGCCACCGCC 10395 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 10335 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 10275 28 100.0 32 ............................ TGAATCCTCTTTAGTTGATTAAGTGGGCGCGG 10215 28 100.0 33 ............................ CAGGTGGCTGCATTCGCGGAGCTGAAGCGCAAT 10154 28 100.0 32 ............................ TGCTGCGCGATCGTTGTGGTCTTGCCAAGCCC 10094 28 100.0 32 ............................ AAGGCGGCAAAGGAAGCGGAGTTGCCGAAGAC 10034 28 100.0 32 ............................ TCGCCCGCGTCCACCAATACGGCCTGCGCGAC 9974 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 9914 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 9854 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 9794 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 9734 28 100.0 32 ............................ AAGCACAGGTCACAGAGGACGCGACCGTGGAT 9674 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 9614 28 75.0 0 .....................AATTTGC | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCTATCCCCGCGCAGGTGCGCTGGCGTTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCGCTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23078-22150 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHRS01000021.1 Pseudomonas oleovorans strain PO_271 NODE_21_length_70859_cov_38.2207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23077 28 100.0 32 ............................ ACAAGGCGAGCCGCGATGCTGCTATCGCAGCC 23017 28 100.0 32 ............................ ATAGGTGCGCGCCACTCGCCGGTACCGGTATC 22957 28 100.0 32 ............................ AGCACCGGCGCGAGCCCCAACGTATTCATCAA 22897 28 100.0 32 ............................ TGGATACGAGCAGCACAAACCGGGCAGGCCCA 22837 28 100.0 32 ............................ AGCAGCAAGGCCGGCAAGCTTGCTGGAGTGCA 22777 28 100.0 32 ............................ TGGAAATACTCGAACAAGCCAGACCGGATAAA 22717 28 100.0 32 ............................ TGAAAACAGAAGAACCTATGCGCAACATCAAC 22657 28 100.0 32 ............................ ACGACGCCAGACCGTTTCCCACCAATCCAGCT 22597 28 100.0 32 ............................ ACAGTCGGAACTTTCGGGCGTGTTGTGCGGCG 22537 28 100.0 32 ............................ ATCTGTGGAGGCTGCCTGATGGCCATCCAGAT 22477 28 100.0 32 ............................ TGATCGCCAAGTGGGCGAAAGCCTACGCTCCG 22417 28 100.0 32 ............................ AGCTTCTTGTAGTCCGGGGTGGATACGGTGAT 22357 28 100.0 32 ............................ TCGGTCGGAGCGGCGTTGTCCCATGCGACCTG 22297 28 100.0 32 ............................ TTGCGCGGGGCGTAGGGGGTGCCGTCCGGGTT 22237 28 92.9 32 ...........A.............C.. TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 22177 28 78.6 0 ............A........C.GCC.C | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCCCAGCCCGGCCATCAGCAAATGGGTTAGCCAGTAGCTGGCGACGTAACGCAGCCAGAACGTGGCATCGGTGGCGACATCGTTCATCAGCCACCCGATCAGCGTGACCGCGATGCTGACCGCGCTCATCAGCAGCGCCACGCCCACCAGATGCAGCGGCAACACCGGCAGTTGCCTTGCGGCCAATGTCGGCGCGAGCGCTTCCGGGGCGAAGGGATCGGGCTCGGTCATGGGGCGATCCTTGTCGTCGATACAGTCCGTTGGGAGGTAGTCGGAGAATAACGACCTTGTTGACGCAGGAAAGTGCGAAAGCCTGTTGGCGTGCTGCAGTCGATGCAAGGGAGAGGATTTATCCACCTTTATCAACACCCCTTTTTTCTCGCCGCAACTCTCACATCTTTAAAATCAGACACTTAACTAACGACCAGAAAAAAGGGTAGAAACGCCTCCAGCCGGGCTTTGATTTTGATAAACAACCACTTGCCCGCTATCTTCCCTA # Right flank : TTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //