Array 1 46794-45926 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMN01000020.1 Photobacterium phosphoreum strain FS-6.3 CFSAN065492_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46793 28 100.0 32 ............................ AGGTTGTTTTTCAATTACAGTAAAAATGCCAT 46733 28 100.0 32 ............................ TTCCCAACGTGCAACCCTCCCGTATCTGTATA 46673 28 100.0 32 ............................ AAGGCGACAACGGTTAGCTGCTGAACCATTAC 46613 28 100.0 32 ............................ ATATTCAGTCAAAACAGCACGAACAACATCAA 46553 28 100.0 32 ............................ TTATTTGCGTCATGGCCAACTGTAAACGATGC 46493 28 100.0 32 ............................ ATACAAAATTTGAAAATCAACCAAAAAGGCTT 46433 28 100.0 32 ............................ TAATGCACAAACAGTCGCAGCCCTTGTCGTGA 46373 28 100.0 32 ............................ AAAGAGCTAGTAATGGCTCGCTTGCAAGTATT 46313 28 100.0 32 ............................ TAAATGATCAGCCGTAAAAACACTGCCTTTAA 46253 28 100.0 32 ............................ GGTGGATCACGTACGCATGTAACGTGGTTTAT 46193 28 100.0 32 ............................ GATTGAATACGTTCAATCTGTTGTTTGCTGAT 46133 28 100.0 32 ............................ GGACACTGACAGTAAACTTAGCATTGCTTTTA 46073 28 100.0 32 ............................ GTATATTTTAACGACATGTCGTGCTTCGCGTT 46013 28 100.0 32 ............................ AAATGGGGTTAGTGTCGTTCAGGCTAATGATT 45953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCGTGTTACGGCTATTACGGCAATTCCGAGTGATATCAAAGGTTATCAAACCGTTAAGCGTGTGCAGACCAAAAGTGCCAATAACAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCTATTCCTGATACAGCCGAGCGTAAGTTAACCTTGCCTTATGTTCAAATACAGAGCTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTAGTTAGTGATGTAACGGATGGTGTATTCAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTGTTTTAAGTGTTGTTTTGATCGTAATATCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTGTATTAGTTGCATTTAAAATCAATGGGTTATAAAGAGTAGATGGAAAAGGGGTAAAAGAGAATTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : TAACTAAAGTACACCGCGAACGTATTCTGCTTGTTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATTTTTATTCAATCTGACAAACACAAAACATTTCGCTAATAAGCCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTCGCTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATATCGGGCTGAAATTGTGTATGGAGTAACGCCTAACACACTGAGTCGTTATGTTAAAAAATTTAATGCTGAATTAGCGTATCTACAGGCTTTGGGTTTAAAAACTAAATAATATTATATGAAGTCCAGCGCCTGCTGGACTTTTTGTTATTAGAACAAAATCTATTGATAGTCATGATTATTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55344-57514 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMN01000020.1 Photobacterium phosphoreum strain FS-6.3 CFSAN065492_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55344 28 100.0 32 ............................ TTCGACACCTTTCTGTGATCAAGGTGTTATCG 55404 28 100.0 32 ............................ AGTAACCGCCTTGAATGTTGATAACACTTCAT 55464 28 100.0 32 ............................ AATGCGCTAAATCAATCGCTATCGACTCAATT 55524 28 100.0 32 ............................ AAGCACGATTGCCATATCAGCCCAACGACCAT 55584 28 100.0 32 ............................ ATGAATCATTGTAAAACTTTGATCTTTATATC 55644 28 100.0 32 ............................ GTGAGCATTTTAGGTGGTGAATTTAACGTTAC 55704 28 100.0 32 ............................ AACGCTTGTCGGTATCAAAAAACAATTTAAAA 55764 28 100.0 32 ............................ GTTAACACTGCTGATAAAATAGAGATTAAAAA 55824 28 100.0 32 ............................ CACTACAGCACCCGCTAACGGGTTGAACGCTT 55884 28 100.0 32 ............................ TGCTGGGTTATTTGAACCTTCTTTTGCTCGTC 55944 28 100.0 32 ............................ CTGATTTCAGCATGAATCATATGTTGATTGAG 56004 28 100.0 33 ............................ GTTAATAAATTGTCTAACTTGCCCTCGATTCCA 56065 28 100.0 32 ............................ TGCGGTGGCGTCAGGGATGGCAAAAATAGCGT 56125 28 100.0 32 ............................ AGCGGGGTTAGTGTTGGAATTGCCCGACTTAG 56185 28 100.0 32 ............................ TGAAAAGCAAGAATCTGCTTTAGATAGTTCTG 56245 28 100.0 32 ............................ AAGTGGCTGGCATGACAGCCGAAGTTAAAAAG 56305 28 100.0 32 ............................ CGAATCTTGTGTTACGAGACGTTCGGCGGTGA 56365 28 100.0 32 ............................ TCAAGAATATTCTGTACAGCAGTTTGGGCACC 56425 28 100.0 32 ............................ GTTCATTTCCCGTCAACTCAGAACTTATCACT 56485 28 100.0 32 ............................ ATGATCATGCGTCCACTCCCTTGTTATCTTGT 56545 28 100.0 32 ............................ TGTGAGCACCTTACCCTGAGCGTTTAGAATCT 56605 28 100.0 32 ............................ TTTAAGTAAAACGGCATGACTGCCAAGGGGTA 56665 28 100.0 32 ............................ ACATAGGTTCTGTTAAATTTGCGTGATATGTT 56725 28 100.0 32 ............................ ATCAGATATTTGTAAATAACCAATATCATTTT 56785 28 100.0 32 ............................ TAATCGGTTTATCAATGATATTGATGGCCGTA 56845 28 96.4 32 ...........C................ TGGTTGAAGTTGGCATCATCTACACATACCGA 56905 28 96.4 32 ...........C................ ACCACCTAATTTTCCCGTCACGACCCAAACAG 56965 28 96.4 32 ...........C................ TGACGGAATCCAACCCAGCAACCTATTTTTTA 57025 28 96.4 16 ...........C................ AAGCAACGTGCTGATG Deletion [57069] 57069 27 78.6 32 C.AA...-A..C................ AGAATGTCACCCCTAGAAAACCGAAACGTCTC 57128 28 96.4 32 ...........C................ GTTCATTACTTCGTGACCGAAATTGAAGGTGA 57188 28 96.4 32 ...........C................ GGCAGCCGAGGCCGCGCCAACGTGTGAGCAAT 57248 28 96.4 32 ...........C................ AGGGGGGGAAATATCAATAGTGATTCCTTTGT 57308 28 92.9 32 ...........C.....T.......... ACATCACCGTAACGCGTCTTAGCATCAGAGCT 57368 28 96.4 32 ...........C................ TGCAACGATTAAACCAAAAGTACAAATTTGCG 57428 28 96.4 32 ...........C................ AGCAAGCAAACCTTTACGTTGAGACTCATGAA 57488 27 82.1 0 ...........C........G..-T..T | ========== ====== ====== ====== ============================ ================================= ================== 37 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTAGCTGAAAATAAGGGTGTCCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTGGCTAATTCACGCATTGCCGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCAGTCGTGTTTGCTATAGGAATATTCCAATACAATGATTGCTTACCTTCGTCAGTCACATATTCAACCCGCCCACCATTCACTAACACTCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTCAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAATGCATTATATACACAGATACGCATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTGGTGAGAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATAGTGCTTCA # Right flank : TTACTGGCAGCAGCCATGGCTTCTTTGATTTCATCAGAGCCATAGCCTTTTGATGAAAGATAAGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCTGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAACACTTCTGTTTCAAGATCGGCATTCATGCCTTTGATTTTTGCTTTAGTTAATAGCGTATCGGCAGCATCGTGTTCTGCAATCGCTCTTGAAATATCTTGAAAACTATATCCTCGCTTAGTGAGATCATTGGTTATTTTCTCTTTGGTGGTTTGGCTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //