Array 1 161206-161505 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811763.1 Staphylococcus sp. HMSC065D05 Scaffold158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 161206 36 100.0 30 .................................... TTAAAGGACTTACAGATACATTTAGTATGA 161272 36 100.0 30 .................................... GATAAGACGTTTACTCATAACAGAAACAGC 161338 36 100.0 30 .................................... ATATGAACACATTAAGCGGTTTAGATAAAA 161404 36 100.0 30 .................................... AAAAAAAGAAGATGAAAATGCATTTGATAA 161470 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : AAAGAGAGGTTTGAGTATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATCTCTAACTACTTGCTTGCGGATATTATTGTTTTTAATGATATTGATCTTTATATCATTGTTTCATTTTTAAAACATTGTAATTTAGAATATCAATTAGATATCGATAAAACAAAAATTTCATTAGCGTTATCAACTTATCTATTTTCTTAATTATAATTCAAGGTTATAATTGTGCTAGAGGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATAAGACAACGACAATTATTCACAACTCAATAGTTTTAGTACTCTGTAATTTTAGGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACTCTGTAATTTTAGGTATAAGGTATATTTATCTTCATCATTTGGACAAGCCCACATG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAATTTTAGGTATAAGGTATATCCTACGACTATTACAAGTTTAGTAACGGGCGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATGCGTTTCAGGATAACCCATGCCACCACCTTGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATTGTTTATTCAGTTTTGTGATTTATATAATAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATCAACCGAAATAGAACAAGCTATAAAAAATAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATCAGTTGGTCGTAAAGATACAGTTGTACTTAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATCATCTTACCTTGCTATTATGACGGTAAACAGTTTTAGTAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 161665-162095 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811763.1 Staphylococcus sp. HMSC065D05 Scaffold158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 161665 36 100.0 30 .................................... GCGTTTCAGGATAACCCATGCCACCACCTT 161731 36 100.0 30 .................................... TGTTTATTCAGTTTTGTGATTTATATAATA 161797 36 100.0 30 .................................... CAACCGAAATAGAACAAGCTATAAAAAATA 161863 36 100.0 30 .................................... CAGTTGGTCGTAAAGATACAGTTGTACTTA 161929 36 100.0 30 .................................... CATCTTACCTTGCTATTATGACGGTAAACA 161995 36 100.0 30 .................................... CTCGATTGAAGTTATAAAATAATTTAACTG 162061 35 94.4 0 ...............-...................C | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATAAGGTATATTTATCTTCATCATTTGGACAAGCCCACATGGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATTTAAAGGACTTACAGATACATTTAGTATGAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATGATAAGACGTTTACTCATAACAGAAACAGCGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATATATGAACACATTAAGCGGTTTAGATAAAAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATATAAAAAAAGAAGATGAAAATGCATTTGATAAGTTTTAGTACTCTGTAATTTTAGGTATAAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAATTTTAGGTATAAGGTATATCCTACGACTATTACAAGTTTAGTAACGGGC # Right flank : CCCTTTCTTGAATGTCATTTCTAAGTTGTTTGCAACAGTTTATGGTTATTTAGAGAGCATAGTAATGAAAAATGGGATTTAGTACCAAAAGCAGGACGCTCACCATATGATAAATATAATGACGAGGAAACTTTTTATGCGTGGAAACGACAGGCTATGATATTTCTGAAAGAATCATACAATGATTGGGATATGTTAACGATTGCACAATATCATGGGTTAGCGACGAGGCTATTAGATTGGAGTTTCAATCCATTAGTAGCAGCTTATTTCGCTGTGAAAGACTTTGAGGATTGTGATGCTGTTATTTATGCTTATTTGAAAAAATCAGATATTAATGTCAAGGAAGTACATCCAATTGAGAGTAAGGGAATAAAGAAAGTGAAACCAAATGGACTAGCAACAAGAGTAGTAAGACAAAGTGGTATTTTCACAATTCATGAACAACCAACTGCGTCTATTGAAGATAACTTATCGAAAAAAGAAAAATTAAATAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //