Array 1 390243-389974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHZ01000007.1 Xanthomonas sp. GPE 39 Xal-GPE_39-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 390242 28 85.7 32 .CAAC....................... GTATGCGTGCATCTTTGATCTGAGTTGCGTTT 390182 28 100.0 32 ............................ AGAATGGCGATCAAGACGAAGTAACCGGCGTA 390122 28 96.4 32 ...A........................ TGCGGAAGACGCAATCAAGGTCAGCGCCACAC 390062 28 92.9 33 .....................C..A... GATCCGAGCCAGCGTCGTGATGTTGGGCAGGGC 390001 28 82.1 0 ...........CAC.A........A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 91.4 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GCACTGGATGAACGGCTGCATGCGACCCAAGCGCAGTGGGACCCACGCCCATCGCTCGGCGTGGTGCTGGCCGCCGCGCCGTATCCGGACACGCCGGTCACTGGCGAGCCGATCACCGGCCTGGAGACGGTGCCCGCCGACGCCAAAGTGTTCCATGCCGGCACCGCACTCGATGCGCAAGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTGGCCGCGTTAGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCATGACCGGGATTCATTGGGCCAGTGCTTTCCACCGCCACGATATCGGCTGGCGCGCAATCGCGCGCGAACGCGACGCGTAGCGCGTGTAAGCACGGCATCCCCTCGCGACGGCATCATCGCTAACGCCCGTTGCGAGAGGATGTCGCTGTGCGCGCAAGCGGCAGCGGCTGGCTGTGCTGGAAAGCTGCAACAGGTGTGAATTGCGCATCCACGCATCCATCCGATGTCA # Right flank : ATCCGCCGCTGGATCGCCACACCAATGCCTCCCATTCTCTGACACACCCGGTGACGCTGATCGCGTCGCACCGACAACGGGTACGCTATCGTGTCGCCGTGTCCACGACCTCGCTCGAATCCCGTCTCAGCCGCCTCTGGGCCCACGAAAAGGCCAGCTACGGCCTGCGTGTGTTCATCGCACTGGCCGCGGCCATGGGCCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTACCGGCGATCTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAATTGGCTGGGCCGGATCAAATCGGTGCTGCTGTCGCTTCTGTGCTTCGCCGCCGCTGCCGCCGCGGTGGTGGTGCTGTTCCCGTATCCGCTCGCGTTCGTGGCCGGCCTGGCGCTGTCCACCTTCGCCCTGACCCTGCTCGGCGCGCTCGGCGAACGCTATGCGTCCATCGCCCAGGGCACGGTGGCGCTGGCGATCTACACCATGATCGGCATC # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 480933-480664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHZ01000007.1 Xanthomonas sp. GPE 39 Xal-GPE_39-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 480932 28 92.9 32 A.C......................... TCGCGTATGGGCCAACGTGAACACGCTGGCGA 480872 28 100.0 32 ............................ TTCTTGCGGCGGGACAACGAACACCGTCCGCG 480812 28 100.0 32 ............................ ACTTACGCCCTTCGCGCCCGTCCTTGATCATC 480752 28 96.4 32 ............A............... TTCACCTGGTCTCCAACGGCCAGTTCGGTCTT 480692 28 89.3 0 ...........CA............C.. | T [480668] ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTATTTTTTTGTTTCCTTCTTGAACAGGCTCCGATGCCCTGCAAAGCCCCCACGCCATGCCGCCACCCTGGTTGCGGCAAGCTGGTTTCGGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGTCGGGGTGGTACCAAGACCGACGCAATGCACATCAACGTGGCTACGGCGCAAAGTGGCAGAAACTGCGCGCCGTCGTCATGCAGCGCGATCAAGGACTGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGCGGCACCGATCATCCAAACAACTGCCAGGCGATCTGTCATCGCTGTCACGTACTCAAGACGGCGCAGGAATCGCGCCAGGGACGCGAAGGTGTTTGATGAAAAACAATCTGGACAGATGCACAATGACAACAGTCATGGCATGCTCG # Right flank : TGTTCGGGGCATCAATCGGACCCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCATCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGTCCCCCCTGCAAGGAATCAATATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGCACCAACCTGGGCGAACCCAAGCCACAAGGTGATCTGACAGAGCCACCCGACTACATGAGCGAGGGCGCAAAGTCAGCCTGGCGCTACGCGCTGGAATGCGCGCCACCGCATCTGCTCAAGCGCCTGGACATGTCGGTGCTGGAAGTGTGGGCCTGTGCCGCTGATCTGTATCGCAAGGCACAGACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCACCCAACACCGGCGTGCCGATGCAGTCACCGTATCTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAGGCGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3208667-3209915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHZ01000007.1 Xanthomonas sp. GPE 39 Xal-GPE_39-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3208667 33 100.0 34 ................................. GGGCAGTGCGACCAGTGAGTCGGCCTGCGACATG 3208734 33 100.0 35 ................................. ACAGTGCCACTGATCTTCAACGACTTGCCCTTGTA 3208802 33 100.0 35 ................................. CAGCGCTGGGTTGACGCCACTCGCATCAATCTCGG 3208870 33 100.0 34 ................................. ATGACGGTCCACATGCGACGCTGGCCGTGGATGC 3208937 33 100.0 32 ................................. ACAAGTCCAACGCGGCAAAGAATTGCAGCGGC 3209002 33 100.0 35 ................................. AAGTTAATCAAACGACCATTAGTGCTGATGATGCT 3209070 33 100.0 35 ................................. ATCGCGCTGGCCGATTGCGCAATGCCATCTTGCAG 3209138 33 100.0 34 ................................. TTTGCACATAGTTAAGCGTTGTTGCCGCACCCTC 3209205 33 100.0 36 ................................. TCCAACGCCTCGCAGGCCATACATGACAAAGCTCCT 3209274 33 100.0 36 ................................. TTTTAGAATATCGAATTAAGCCTGAAGCACCCGAGG 3209343 33 100.0 34 ................................. ATGAGCAAAGCAGCCCACCGAACAGCCACGGAAG 3209410 33 100.0 34 ................................. AGTTTTTGGGTTATTCCGGACGAAGCCGCTGTTA 3209477 33 100.0 35 ................................. ACGTCCGTCAATGCGATGCTGCAAGTGCAAGCAAC 3209545 33 100.0 34 ................................. TGGGCACAACCGCGCGTGATCAACGTCGTGCGTA 3209612 33 100.0 36 ................................. TGACCATCCATGCGCTCGGTTCTTGCCGCACAGGCT 3209681 33 100.0 34 ................................. CTTACCAACGATGGGGCAGTCCTGTCGTGGGCAG 3209748 33 97.0 34 ...................A............. ATGTAAGCACCTCCTCCTATTGCCGTCATTGGTC 3209815 33 100.0 35 ................................. ACTCGCTGCGGACCAACGGGCAAACATTTCGAGCG 3209883 33 97.0 0 ......................C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.7 35 GTCGCGCCCTTACACGGGCGCGTGGATTGAAAC # Left flank : TGGAAATAAAATGGCAATCGCCGCATGATGGTCTTGGTCAGCTACGACGTCAGCACCAGCTCGCCGGGGGGCGATAAGCGCCTGCGCAAGGTCGCCAAAGCCTGTCGCGACCTGGGGCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGAGCCGGCGCAATGGACTGCACTAAGGCAACGCCTTTGCGACCTCATCGACCCGGACATCGACAGCCTACGGCTCTACCATCTCGGCGCAAAGTGGGAAGCCCGCGTCGAGCACGTCGGCGCCAAACCCAGCCTCGACCTCAAAGGCCCCCTGATCTTTTGATGCGAACCCTAAGCGACCGTGAATTCGCCGGCATGTTCGCGGAAATTTAACTTATTGATTTTTATTGAGAAATAGTCTTTTCAGCCTGGTTCTAGAGCAGAAGAGGATGAAATCACCAGCGCAGAAACACGATTCGCGAAAACAAGGGGTTTTCTCAAGCACACGCCAATCTTTATGCTGATGGC # Right flank : CGAACATCTTGAACTACTCCACCGTCACCGACTTAGCCAAATTACGCGGCTTGTCCACATCCGTGCCGCGTGCCAAGGCGGTGTGGTAAGCCAGCAATTGCACCGGCACGGTGTGCAGTACCGGACTCAACAGACCAGCGTGGCGTGGCGTGCGGATCACGTGTACGCCTTCGGACGCGTGAAAATTACTATCCTGATCGGCGAAGACGAATAATTCACCACCACGCGCACGCACCTCCTGCATGTTGGATTTCACCTTCTCCAAAAGCGCGTCGTTGGGTGCGATCACCACCACTGGCATCGTCGAATCCACCAGCGCCAGCGGGCCGTGCTTGAGTTCGCCGGCCGGATAACCCTCGGCATGGATATAGGTAATTTCCTTGAGTTTGAGCGCACCCTCCAACGCAATCGGATAATGCAGGCCACGACCGAGAAACAGCGCGTTGTGCTTGTCGGCAAAGCGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTACACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3377855-3381122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHZ01000007.1 Xanthomonas sp. GPE 39 Xal-GPE_39-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3377855 28 100.0 32 ............................ TTCGGGGCCTAAACCTTCCTAAGGTGCCGATC 3377915 28 100.0 32 ............................ AGTACCAAGCAGCGACCTCCACAGCGTCGTCC 3377975 28 100.0 32 ............................ ACAAACGAGGAAGTACTAGCGGCTAAAGCGGG 3378035 28 100.0 32 ............................ ACAGGTGCCGCGCCGCCGCCCGCTCCGCCACC 3378095 28 100.0 32 ............................ GCGCGGGCTTACTTGCGGTGCTGGTCTACGTC 3378155 28 100.0 32 ............................ TTTGGGGCGCGCACGTAGTTGGCCGGCAGCAC 3378215 28 100.0 32 ............................ CGTAGCTTGATCTAGGCGCATCGGCTGTGTGC 3378275 28 100.0 32 ............................ GGAGATTGCGGATATCAAGCCGCGTTTGTATG 3378335 28 100.0 32 ............................ ACGACGATTTGTGCTGCTGGGAACGGCAAACA 3378395 28 100.0 32 ............................ ACACGGCACGCGCGATTTGATTGATTGCGCCG 3378455 28 100.0 32 ............................ TCGTCATCCAGCGCTTCGCCCTTGGCGAATCA 3378515 28 100.0 32 ............................ TGCTTCGGGCGGCGCTTGAGTCAGCGGCGGAT 3378575 28 100.0 32 ............................ TTCATCTGCGAGCGCATTCACCAATTCAATGC 3378635 28 100.0 33 ............................ TACGCAGGCGTACGTAGACGTAACGCTCTTTAT 3378696 28 100.0 32 ............................ GCGTAAGACCAGCCGAGTGACAGGGTGTTATT 3378756 28 100.0 32 ............................ CATGCGCGACGCACCACCACCACCACCCACGG 3378816 28 100.0 32 ............................ GAATGTTGGACCACGGTGGATTGCAGAAGACG 3378876 28 100.0 32 ............................ TACGACACGCCGACGGATTATGCGAAGGCGCA 3378936 28 100.0 32 ............................ CTTGACCGGAGCCGGCTGAGCGGACTTGTCAA 3378996 28 100.0 32 ............................ TGCTGTTGATGACGTTGCCGCAGCCGCTGCCG 3379056 28 100.0 32 ............................ GTTCATAGCGGCTTCGTTGCCCTCGTCGCCCA 3379116 28 100.0 32 ............................ ACTCCGCCGTCCCTGCTGATTGATCCGTCTGC 3379176 28 100.0 32 ............................ GGCTGCACGCCACGAGGCGGGCCGACGGGGTC 3379236 28 100.0 32 ............................ CATCCAGACTGCAACGATGGCTGGATCCGCTG 3379296 28 100.0 32 ............................ GATGCCTTCAAGACGCGGTCGTCCTGCAAAAC 3379356 28 100.0 32 ............................ ATTCTGGGGGCTGTATGGCTCGCATTGGATTC 3379416 28 100.0 32 ............................ ACGGCCAGCGCGCTGTCGATCGCCTTGGCAAC 3379476 28 100.0 32 ............................ AGCACAGAGTTGCAATACGACGACCGCCCTTT 3379536 28 100.0 32 ............................ AATTATCCGCCGCAATCGCGCGCGCGTTCTAT 3379596 28 100.0 32 ............................ GTAACTCCGGCGCTGCGAAGCAGAGCACCAGG 3379656 28 100.0 32 ............................ AAGCAAGAGCACCGCGCCGGCGGCCGGAACCG 3379716 28 100.0 32 ............................ TTCCCTCGTTTTGCCGCGCCGGGGTGGCTTGG 3379776 28 100.0 32 ............................ TCTTTAACGAGGGTTATACCGACAGCTATAAC 3379836 28 100.0 32 ............................ GCAAACGACGATTGATGCAGCAACAATACCCG 3379896 28 100.0 32 ............................ CGCAGATACCGCAAAAGGTCTACGTCCCTGTC 3379956 28 100.0 32 ............................ GAGCAAGAGCAATGCCCGAGATGTGAACGCAT 3380016 28 100.0 32 ............................ TGCTGGCAAGATCATCGGGATACCGCGAAATT 3380076 28 100.0 32 ............................ GACCAGGCCAAGAATCGAGGCGGTGAATGCGA 3380136 28 100.0 32 ............................ TTGAAGTCCTATCCGGGAATCCTGTCGTCGCT 3380196 28 100.0 32 ............................ GCAACATCTTGATCTGATATGTCCACCCTGCC 3380256 28 100.0 32 ............................ TTCGGTGGAAGCCAGCCGAGCGTGAAGTAGTA 3380316 28 100.0 32 ............................ TTTTTCTGCGACCCGTAGGGGGCCATGGTTGT 3380376 28 100.0 32 ............................ AAGTGACAAACGGCAATCAGCTTCTGGTCGTC 3380436 28 100.0 32 ............................ AAGAGAAAGCGATGCGTCAAACGACAAGCCGG 3380496 28 100.0 32 ............................ CGCATGCGTTTGCCGCTGCGAGCCTGACGTCG 3380556 28 100.0 32 ............................ ATCTGATTTGCTACCGCCGCGATGTTGCAAAT 3380616 28 100.0 32 ............................ GCAATCGCGCGCGCGTTCTATCTATCCAAGCC 3380676 28 96.4 32 ...G........................ TGACGTCCCGCACGTCTACGGCGTGCTTGAGC 3380736 28 100.0 32 ............................ AGTCCTGCGCAATCTCCGCACGCAAGCCTGGG 3380796 28 100.0 32 ............................ GGCAAGCCCGTGGAGGGCTACCGCAATGCGGC 3380856 28 100.0 32 ............................ TCCGCAATCCCCCCCTATATATCGGGGATACA 3380916 28 100.0 32 ............................ GTTCCGAATCAACACGGCCGCTCAAGGGAAGC 3380976 28 100.0 32 ............................ AGTGCTTTCGCAGATTGCTGCAGCTCGGCCTT 3381036 28 100.0 31 ............................ AACCGCGACAATGACCAGGAGAAACTAAGTG 3381095 28 82.1 0 AG..........A........C..A... | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTTGCAGGAACTGATGGCAACCAATTGGCTGCATGGTATGGGCGACCATATGACCATCACAAACATCGGTGCCGTGCCACCGGATGCCGTGCACCGACACGTAACGCGCGTACAGGCCAAGAGCAGCCCCGCCCGCCTGCGTCGGCGGGCCATGCGCCGACATGGCATCAGTGAGGATCTCGCCGTGCAACGCATTCCGGATTCGGCGGCCGAACAGGTGCGACTTCCATTCGTCGTCCTGGGCAGCCGCAGCACCGGCCAAGCCGCGTTCCCGGTATTCGTCAAGCATGGCCCCGTACAGCATGACCCTGTCGCTGGCGACTTCAGCAGCTATGGACTCAGCCGGGGAGCGACCGTTCCCTGGTTCTGACCCTTTTTTCTTACGTCCAAACCCACCAAGGAAAAACAACCACTTAGCAGCCGCCCAAGAAAAAGGGGTCGGCTGCTTTTCTTTACCCGTTTACCTTCCAGTTCAAAGACTTGGATAATAGGATGGCTA # Right flank : ACGATGCCACTGCCCGACAAGCACAGCCGACAGCGCGCATACACCACAACGAAAACGGGATGGCCACACGGCCATCCCGTTCTTGAACCCGGTTTCTTCCCAGGTGTGGGTTAGTTCTTCAAACCGCGATTTTCCAGCAACGGCTCGACGCTGGGATCCTTGCCACGGAAATCGCGATACAAGGTGGCCAAGTCGACACTGTTGCCGCGAGAAAGGATCTTGGCACGGAATATATCGCCGTTCTTGCGCGACAGGCCACCGTTCTCCTTGAACCACTGGAATGCGTCGTCATCGAGCACTTCCGCCCAGAAGTAGGCGTAGTAATTCGCCGAGTAGCCGCCACCCCAGATGTGTTCGAAGTAGGTGGTGTGATAACGCGGTGGTACTTGCGCCAAATCCACTTTGTATTTCTTCAACGCTTCGGCTTCGAACTTGTCCACGTCCTGCAGCGACGCATCGGCCGGTAGCGTGTGCCAAGCCAAGTCAAGCAACGCTGCCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //