Array 1 9191-10996 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000001.1 Cylindrospermopsis raciborskii S05 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 9191 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 9265 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 9340 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 9412 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 9487 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 9560 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 9634 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 9707 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 9783 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 9855 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 9928 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 10003 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 10075 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 10149 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 10229 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 10305 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 10377 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 10449 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 10524 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 10597 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 10671 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 10742 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 10813 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 10888 36 100.0 37 .................................... GAAAAAGTAATAGAGCTATAGAGGGTGGGGTAGGGGG 10961 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 25 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : AATAAAATTATGAGAGTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 4343-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000004.1 Cylindrospermopsis raciborskii S05 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4342 37 100.0 36 ..................................... TAGACTTGACAAGACTAAGCGCTCTAAATTGTTAAC 4269 37 100.0 38 ..................................... GGAGGTAACTTCGATGGGAACACATCAGATATCGATAT 4194 37 100.0 35 ..................................... GTGTTTTTTAGAACATACAGCAGAATAACTGATGG 4122 37 100.0 43 ..................................... TCTACCTAAGTAGAATTCTGCAAAGCCAGGAGCATAGGCAATT 4042 37 100.0 39 ..................................... TTTGCAATCCGCACTCAAAAGCGCATACATCAATCTCTC 3966 37 100.0 37 ..................................... GAGAATATCCAGGAGGTGATTACTCCCCTCCTAGCCC 3892 37 100.0 37 ..................................... CCATTCATGAATTATTTCTGAGTGGCTCATATCTTCG 3818 37 100.0 36 ..................................... CCTGACAAAAATTGACCCAAGCATGTCATTAAACTG 3745 37 100.0 41 ..................................... AATCTCAGATAAAGCTTTTTGAGACTTCAACTCATTTACTT 3667 37 100.0 36 ..................................... GTGGAACTAAATCTCTATTAACTGGTGCTTCCCCTG 3594 37 100.0 37 ..................................... GAATATTGGTGATGAGTAACTGGACACAGTCCAGTTA 3520 37 100.0 33 ..................................... CTCAACCAACCCTGACTCAGGGTTAACAGCAAT 3450 37 100.0 38 ..................................... ATGGTAGCATGATTGCATCTATTGTAATAGGTGACTAT 3375 37 100.0 35 ..................................... AAAAATTCAGATTCTTTCTCGAACCACTTGACAAT 3303 37 100.0 39 ..................................... AAGAAGAAGAGGAGGAGATATACCAAAATGAACATTACA 3227 37 100.0 34 ..................................... TTTTTTGGCTATCCCGCTTCAATTCGTTAATACA 3156 37 100.0 37 ..................................... TTTTTTGCGTCTTCTTTCCGCTTTCCCTAGCGGTGAC 3082 37 100.0 37 ..................................... CCTGTTTTTGGGGATAGAGTGTTGTCGGTTGACAGTT 3008 37 100.0 36 ..................................... AAAAGACCATTTCATTAACAAATGTTAATGTGTCTG 2935 37 100.0 37 ..................................... TAATAACTGCCGGATGTATTTCTGTAGGCTTTCTTTG 2861 37 100.0 40 ..................................... TAGTGTATCCTTAACATCATCTATAAGCCCATTTGCTAAC 2784 37 100.0 38 ..................................... AGATAGCCATAAAAACCGGGTATTAGACAGCTTAATCC 2709 37 100.0 38 ..................................... TTGCCATCTTTGTTGTCTCTTATTACCAGTACTTACAT 2634 37 100.0 40 ..................................... CACTTTATCCACAAATAGAGATTTAATAGACTTTATTTGT 2557 37 100.0 36 ..................................... AACACAAATCAATAAGATCTGAGACTAACCAGACGG 2484 37 100.0 38 ..................................... GCGGTTTTAGGTCGTGGCACGAGCTAAAACCCATGTCC 2409 37 100.0 37 ..................................... CCGGTAAAGGTGTTATCTCTAATACTGGTTGATTATC 2335 37 100.0 41 ..................................... AATGGCTATATTAATGTCCCCTAGTGTCGCACTCGACCCGG 2257 37 100.0 39 ..................................... GATATGTAGTACCGTTTAGATATCCTGGTTCGATATTTT 2181 37 100.0 40 ..................................... CAGCGCTATAAGGATTAAAACTGTGAATGCACATTACAAC 2104 37 100.0 35 ..................................... GGAAAACTGATCACACTGTGCTTAAACATTTATTT 2032 37 100.0 38 ..................................... CCTAACACCGCAATCAGTCCTCACCACGCCCGATAATC 1957 37 100.0 37 ..................................... TCTATGATGGTTTCCTTAGCGGCGGGTGCATCCCGCG 1883 37 100.0 36 ..................................... TAGTCATTTTAGGAGCTGTATAGTAGTCCTCTATAT 1810 37 100.0 37 ..................................... CCAGTGGTTTAACAGTTTTATTGCCGAATAGTAGCCA 1736 37 100.0 37 ..................................... AAAAACTCTTGCAACATCTTTTTGTTAAGTTATCAGG 1662 37 100.0 41 ..................................... ATCGTGCCAAACTCTATTACTTCTGCTAACAAAATTATCAC 1584 37 100.0 35 ..................................... TAGAAGGATACATAACGTTTTCAATCAATGATTGG 1512 37 100.0 38 ..................................... ATCTTGTAAACACAGGATAAGGGTTGAGGGGTGGATAG 1437 37 100.0 37 ..................................... CACAAATAAAGTCTATTAAATCTTTGTTTGTGGATAA 1363 37 100.0 37 ..................................... GAGGCTTACTTTAGTTTATGTAAGTCTCAACCAAAGT 1289 37 100.0 37 ..................................... ACACTATAATTAATAGTGGTAACAGAAAAAAATCTAA 1215 37 100.0 34 ..................................... AGTGCGACATTATACATTTGACCGTTCCAATAGA 1144 37 100.0 36 ..................................... ATAACTTAGACAGCGTGATATCTCCGGTATTGATAG 1071 37 100.0 36 ..................................... TGTTGTCAATAAATAAGTTATATTTATCATTCAAAA 998 37 100.0 41 ..................................... TTATATGGAGTTTTTTTCAACTTTCCTTATTTTGCAAGTGT 920 37 100.0 35 ..................................... ATTTTGCAAGTGTTTCAGCCATTTTTGGGTTCCGT 848 37 100.0 35 ..................................... TGAGGAAATCCATCACACTAACTACCGTAAATCAG 776 37 100.0 42 ..................................... GCGCATAACTACCCATTGGCACTGGGTTCATTCCAATCACTC 697 37 100.0 38 ..................................... TCACCCGTAAAATCTACTGGCAAAAAAAATCTAGTTTC 622 37 100.0 41 ..................................... TGTGGGTATTGATCCGTCTGGTCAGGGTAAAGATTACACTG 544 37 100.0 41 ..................................... CTCGAGAAAAAACAGGGATTAGACGCGGTACGCTCTAATTT 466 37 100.0 39 ..................................... TTTGCAAGCATTGTCATACCAAGATTTGTCATTCTACTG 390 37 100.0 35 ..................................... CTGTAGTTACGTTAGCACCACCTCCCGGTAAAGGT 318 37 100.0 34 ..................................... GCGTGTCTGTGTACCCGTTGCGACCAAACCAGAG 247 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAAAATTGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CTAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 7235-9538 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000211.1 Cylindrospermopsis raciborskii S05 NODE_416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 7235 36 83.3 35 T.....CCG..AG....................... TTCTCAAAAGGACACCAGTGTCTTGTGAGTGAGTG G,A,T [7237,7240,7246] 7309 36 100.0 38 .................................... GATTTTATAAGGTCTCGTTTTTCTCCTATAGGAGATAG 7383 36 100.0 37 .................................... CTGGATTTTCGTCGAGGAATCTTTCTACTAAGTCCCC 7456 36 100.0 37 .................................... TTAAAAAAGCAGCAAGAGAAAACTACGAAAGAGGAAA 7529 36 100.0 36 .................................... TCACGCGTTAAATCACGCGCGACACATATCTCTTTG 7601 36 100.0 40 .................................... TATCTGTTATCCAGTGGAGAGCTGGAGGAATGGTTAGGGG 7677 36 100.0 38 .................................... CCAAAATGCACTTCCTCCACCTGACGGAGAAGGTAGTT 7751 36 100.0 33 .................................... GGCGTCGGTTAACTTACGCTTCTCTTTTGTCTT 7820 36 100.0 36 .................................... AATGACTCAGACGACCCCGCGCTTAAATCAGTAAAA 7892 36 100.0 44 .................................... TCGTCAGTCGCAATCCCGAAAGGATATCGCGTAGTTACCACAAA 7972 36 100.0 37 .................................... GGTTGAGGTTAAGGTTAATGAGCTCACTCCCCAGGAG 8045 36 100.0 47 .................................... TAACCTTTCAGAGGACACACTCATTGAGGAGGAGTTGAGACTCCTCT 8128 36 100.0 73 .................................... GGTGTGAAAGTTGTAATACGTCCAACCATCTACAGAACTCCATTTAGCTGGATGAAACTCACCATCAATCTTA 8237 36 100.0 38 .................................... TTCATAACCCTATTGAGGTACATCCTCAAGCTCAACAA 8311 36 100.0 38 .................................... ATCATAACAGCGTAGGATGAAAAGCGCGGAGTTGACGA 8385 36 100.0 39 .................................... TAAAGAACAAAAAAACCCCATCGAAGCTCTTGCTTAGAT 8460 36 100.0 37 .................................... CTACTCTTAATGGTATATTAAACGTTCAAGTAGTGTT 8533 36 100.0 37 .................................... TGTCACGTGGATCCACGTGACACTACGGGTGGCTAGC 8606 36 100.0 42 .................................... TTTAAGTGGGGTTGACTCTCGCGCTATAGCTGCATTGCGCAG 8684 36 100.0 37 .................................... AAGAACAATCTCTTATCCAACTCCGCTACTCCACTCT 8757 36 100.0 37 .................................... TTTCTAGGAGTTCAAGAAAGGTAAGAGTATCAATCAT 8830 36 100.0 38 .................................... TCTTCCGCTACCCCTTCAAAGTAGTTCCAGCCAATCTT 8904 36 97.2 35 ...................T................ AAACTATCTCCCGCTACCGTGCTGAAGCACGCCCT 8975 36 100.0 40 .................................... CCTTGTCCAAAGCTTCTGTGGGGGTATTCAGATTGTCCTG 9051 36 100.0 48 .................................... GCCCGTCCGGGTCACCTACCCGACCGATTACGGCAAGTATAAAACCGA 9135 36 100.0 34 .................................... CTGCATACGAACTGCTCAAGTGAAAACAAAAAGG 9205 36 100.0 41 .................................... GTTGGAGCTTTTTCACAATATAACGTGATTGAAGCTCGTCA 9282 36 100.0 37 .................................... GCAGTATTAGAGTCTGTTTTGTTTTCCTTATCTTCTA 9355 36 100.0 37 .................................... GATCAGTGCAGGAGGGGCATCCTGTACGTTAAATATT 9428 36 100.0 39 .................................... TCGCGTGAGCGAAAGTCGCAGCAGAGCAGGGTTCAAAAA 9503 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 99.4 40 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : GGCTTGATGAGCAAGGAGTTTACTTTGCTTTACGTCAGAAAAAAGACCTTCATTTTCTTCAAGAAGAAATAGGACTTGAATATCAAGTTCTTAAAAACCAAGGATTTAAGCCGGGGATGTCGAAGTTTTATCAGGGAGTTAAATGTGGTAAAGGAGATGAATTAGGGTTATTTAATATCGCTGTTTATTGGAAGAGAAAATATTGTCATAAAGGACCAAAAGAACCTTGGTATATCTTAACGAATCTACCAAATCTCAAACAAACTTTATGCCTCTATAGATGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTACGGCATGGAATTATGGGCTGATTTAGCTCTGACCTTAATCGGTCTCAAACCTCATAAACGCCTCTTTTTCCAGCGTGGCTTTCAGGCTCTATCCCTTATTAAACAAGCTGTTTGACCAC # Right flank : CCCTCCATTTTAAGCCCTTGCTCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAATCTCTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 207-843 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000011.1 Cylindrospermopsis raciborskii S05 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 207 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 285 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 360 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 434 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 510 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 582 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 655 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 730 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 807 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : ATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGAG # Right flank : CTTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 1371-2217 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000259.1 Cylindrospermopsis raciborskii S05 NODE_563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1371 36 100.0 35 .................................... TCTGGGCCTCAGGATCCCTAGATATAAACACTTCT 1442 36 100.0 38 .................................... CAGTAAACCCTAGCCCAGAACACCTCCGGTGGCATCGA 1516 36 100.0 39 .................................... CTTCTTTCAACTTGGACAAGGTTTGGAAATCCAACAGTT 1591 36 100.0 42 .................................... GGATTTCCCTGTGGTTCCATCTCATATTCCCTCGGAGGAAGA 1669 36 100.0 40 .................................... CCTTTAGTTCCAGTAAACGATAGCCCCAAAAACCTCCGGT 1745 36 100.0 34 .................................... AAGAAGTCCACCACTGGAAACTCTGCGTCTGCGA 1815 36 100.0 36 .................................... TTAATTTAAGGAAATTACAGCAGAACTCTTCTAGTT 1887 36 100.0 36 .................................... AGGGGAAAAAAATGACTACAACAAATAAAAATACAG 1959 36 100.0 40 .................................... TACCAGGATTTATGGGTAGTACTCATAAATCCTGAATAAT 2035 36 100.0 37 .................................... TTATTTTCCGTGCCTCTACCCGACAAAATAAATGTTC 2108 36 100.0 38 .................................... CGGGGTTGTTTCCGGTCTACCCGGGGTTGTTTCCGGTC 2182 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 3677-1721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000082.1 Cylindrospermopsis raciborskii S05 NODE_130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3676 36 100.0 37 .................................... TAAAGGTATTACTTTCATAAGAGGTATAGAGAGATTT 3603 36 100.0 37 .................................... CTAGTAGACCACGTAGTAAGTGTAGGTTGTAAATCGT 3530 36 100.0 42 .................................... AATGAAAGTTCCCATCGGGTTGACTTCCTAGGTCGTTGCCAA 3452 36 100.0 35 .................................... CAAGAACAGCATTATCCATGTCCATTTCATTTTCT 3381 36 100.0 42 .................................... ACCTCTTCAAGTATTTCCTCGATTTCACTGATACAACAGCGA 3303 36 100.0 39 .................................... GTGGTGTTGGTGGTCATGGTGTGGGGTTGGGAGTTGGTG 3228 36 100.0 40 .................................... TAAACGATAATAAACGATTAATACAAAAACAACAAATAAT 3152 36 100.0 41 .................................... AAAATATTTTCCAGTAAGTATTATTATTTTGAAGTGCTTCA 3075 36 100.0 37 .................................... GAAAATAGCACTTCTTTTTTGAATTTACTGTTTGTTT 3002 36 100.0 38 .................................... AAATCCTTGAAGGGAATGAATTTGTGCTAATCATTCCT 2928 36 100.0 39 .................................... GAATAGCCGGAAACAACCCGGGTAGAACGGGAATAGCCG 2853 36 100.0 38 .................................... AACAGTACAATTAGTTGTTTTGTACATTCTCTTGTTTT 2779 36 100.0 34 .................................... CAACGTAAATCGATTAACCCTTTTTTAACACAAT 2709 36 100.0 38 .................................... CCTCAAAATATTTTTCCTGGCTTTTTGAAACCAACTTT 2635 36 100.0 35 .................................... TGTTGGTGGGCATGGTGGTGTTGGTGGTGTTGGTA 2564 36 100.0 37 .................................... ATGAGTTCCAAGAAAGCATTTATGGTTGGGAAGTATA 2491 36 100.0 34 .................................... TTAAAAACGGCTTACGAATACAATAGCTTAACAA 2421 36 100.0 40 .................................... TATAGGAGCTAAAAGATATAATTTTTCAGAGTGTTCCCAT 2345 36 100.0 36 .................................... CCTCTTCCGTGAGGTTGATGAAATTCATTTTGGCAT 2273 36 100.0 37 .................................... TTTCATAGCTTCACTATCGCTTACTAGAAAGATTCCT 2200 36 100.0 38 .................................... AAGTGTAGTATCACATGATCCTCTTTCAAGATAATACA 2126 36 100.0 36 .................................... TATCGTATATACGATATTGGTCGTTATCTTCTTTTG 2054 36 100.0 42 .................................... AAGTAGAATCGAACACCACTGGTCGTTTGACCAGTGATTCTC 1976 36 100.0 39 .................................... CCAAGACAAATCTTTTAATTCATCTTGTCGACAGAAAGT 1901 36 100.0 38 .................................... AACCTCTGCATAGCAGAGACAGTCACAGAGGGGTTTGC 1827 36 100.0 35 .................................... CCGCTGGATTGTGGTGAAGAATGATAGAACTGCGG 1756 36 86.1 0 ........A.....................A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.5 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAGAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 5119-4937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000360.1 Cylindrospermopsis raciborskii S05 NODE_862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 5118 35 100.0 38 ................................... CGCACTAAATTGTGCTCCCACTCCCCCCCAGAGGGGAA 5045 35 100.0 39 ................................... CGATGAGACGAAACCCAAGAGGTACCTGGACTCCTGAGG 4971 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 3 35 100.0 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Left flank : GTTATATGAAAAAGACTCTAATAAAGCACTACAACTCATTAATAAACTTAGAGCATTATACTTAAGTCAAAACAATATTATTGACTCAAGAGAAATAACTATAGAGCACTTAGATAAAATACGGACTTTACAGCCTAAAACTGACGAGGAATATAATAAACTAGATGGTAAACAAAAAAGAGAATTAAATACTAGAATAGAAGATTATTTATTAAGACTAGTTCTAGAAAAAGAAGATTTTTCTTCAGTAAAAGTAGATCCTTCTAGTAAAATAAATACCTTAGAAGATAGAAGAGAGAAAAACCTAAAAAAAATATCTTTAGGTCAACAAATACGAGCTACTATGATTAGACAAGGCGCTCCATTTGGTTCTTCATGGAGGTCTCGTACAGGACACGTTTTAAAAAGAGTTTTAAGTGACCGTAAACTGATAGAAAGAGGTAAAAAAACAGGCACTTACATAGTGCCAGACGAAAAAGCTATAGGTAACAACACTCTAG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTTATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTGAGATTTTTACCACCCTTGCGAGATTTAAATAGAGGAGACTCATTAGTGGTTTTATGCGACTTTAAAGATGCCCATAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 9157-8239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000360.1 Cylindrospermopsis raciborskii S05 NODE_862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 9156 36 100.0 37 .................................... GTGCGGCTTGGTGTGAATATAGTTTACAATTAAAACA 9083 36 100.0 37 .................................... GTGTTAGTGGGGTTGGTGTTGGTGGTCATGGTGTTGG 9010 36 100.0 37 .................................... AGCCAAATGAACTCTGATTCTTGCTGCCTTTTAGTGA 8937 36 100.0 36 .................................... ATCTTCAATTACAGTGCCAGTACCACATCCCATCAT 8865 36 100.0 39 .................................... CATCGGGTTGACTTCCTAGGTCGTTGCCAACTATTTTCT 8790 36 100.0 36 .................................... TAAATAGATCTCTACCCGCTCTTAAGGATGTGGATT 8718 36 100.0 37 .................................... TTATTAAATTACTGTCTAGATGAAGCACGAGAAGTTT 8645 36 100.0 36 .................................... CAAAAAAGACAATCAGTCCATCTTGTTTGATCACAA 8573 36 100.0 39 .................................... TTCTTCGATGAATTTGTTCTCGTTTATGTTTTTACCAAC 8498 36 100.0 36 .................................... ACTTCTTAACCCGCTCATACCCCCCTATTCCCCTTT 8426 36 100.0 42 .................................... AAATTGGAAGAAGGAGTGGAAGTGGAAGAAGGAGTTTCCTCC 8348 36 100.0 38 .................................... AAACCTATTGACAAGGGAAACTTGACATGGTATATTGA 8274 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TGCTGTTTACGGACAATTATGGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGGACAGAGACT # Right flank : GCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18912-18213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000371.1 Cylindrospermopsis raciborskii S05 NODE_896, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18911 36 100.0 37 .................................... GCGATCGACCCGGACTGGCTCACTTCCGCTTCAAAAC 18838 36 100.0 39 .................................... CGGCATCCCAGAGGAAGACCTTGCTGGGATTAGCATCAA 18763 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 18690 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 18619 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 18543 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 18472 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 18400 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 18323 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 18248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : ACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 51056-52319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000009.1 Cylindrospermopsis raciborskii S05 NODE_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 51056 36 100.0 37 .................................... ATTCAAATTGTCCTGCGCGATCGCCTCAATGCGCCTG 51129 36 100.0 36 .................................... TAAAGAGGAAGGCTTTATGAGGGCCGTCCCTCTCAA 51201 36 100.0 35 .................................... GGGCAAATAACGGAGGGATCGAAGTGGAGGATTAC 51272 36 100.0 36 .................................... CCTTGCTTAGATGGGGTTTTTTCTTTATCTCTTTAC 51344 36 100.0 39 .................................... CCCCTACTAGTCTTTCTCTACCTCGCATGGTTTAACTTA 51419 36 100.0 34 .................................... AGAGCTAATAAGTCTAATAACTAATAATATAGAC 51489 36 100.0 37 .................................... CTCGTAAGTCTTTAGTTTACTATCTACTTTAGCCTTA 51562 36 100.0 36 .................................... GCAGTTAGAGTTAGGATCATCTAGATTATCTAATAC 51634 36 100.0 37 .................................... AGGTTGGGGTTGGTGGTGTTGGTGGGGTTATTATTCA 51707 36 100.0 39 .................................... AATCAATCTCTATTACAGGTGGAGTTATAGGAAATATAG 51782 36 100.0 39 .................................... AGGAGTTACCTCAAGAGGAGTTACTTCTTGAGGTAACTC 51857 36 100.0 37 .................................... TATAGTAGGTACCAGCAGCGGGTACAGGGCTGTAATA 51930 36 100.0 32 .................................... GTTAAATTCCCCACTGCTAACTTCTCCCATTG 51998 36 100.0 35 .................................... AGGTAGCCGCGCGGCTACCTTCAATAATCAATCTC 52069 36 100.0 35 .................................... TCTCGTACCAGTCCTTATCCTCAAGTTTCCAAGCC 52140 36 100.0 35 .................................... ACGTTGATTATTGTTGGAACTCTCATAATTTTATT 52211 36 100.0 37 .................................... CCCCCTACCCCACCCTCTATAGCTCTATTACTTTTTC 52284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 100.0 36 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTGTCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGTTAGGTAAAGTTTTAATCTATATGATATTTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGGATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAGTAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : CATTATAAGGATACATACTATCAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2020-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHZ01000372.1 Cylindrospermopsis raciborskii S05 NODE_907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2019 36 100.0 40 .................................... AGACAAAACTATCAAGGCTGTCTATAGCTATTCTAAAGAT 1943 36 100.0 34 .................................... TTTTCAACAGGCTCACAACCATCAACTGTTACAG 1873 36 100.0 39 .................................... TAAAACATCAAAATGAGTTGTAAATTTCATAGTAATAAA 1798 36 100.0 34 .................................... GTAATGAGTTGTATTTAAATGCACAGTTTTTGAA 1728 36 100.0 50 .................................... TTCTTGCGCAGCTGCCCAACCCGCATTTTTCTGTTCTTGACTCAAATAGT 1642 36 100.0 39 .................................... AATATTTGATTTAATTGACAAATCTTTAAAGGAGAATAG 1567 36 100.0 39 .................................... AATATGGGTTTTTTACAGAAGGGTTTTCTATTGTTAGAT 1492 36 100.0 37 .................................... TTACTGTAGATGCTGTCGCAGTTACGGTAACCACGCA 1419 36 100.0 39 .................................... AAATATTGTCTCAAAAGTATTGACAAACCAAAAAGACTA 1344 36 100.0 39 .................................... TTTTTAATTATTGGTTTTGTTTTACTATCATACTTTATA 1269 36 100.0 37 .................................... GAAACAGTGCTAGTGGTTAATCGGAGGGTTAATACCA 1196 36 100.0 39 .................................... AGTTTCCAGTGATCATTATTCGTTTGTAAGGCAGAGTCT 1121 36 100.0 46 .................................... TGTTGCAAACAGTGTTATATGTAGGTAAGAAAAATGATGCTTATAG 1039 36 100.0 37 .................................... TGGAGAGTTTAAGCTCCACCAAGGCGGCGCGGTACAA 966 36 100.0 35 .................................... AAGGAAAGGCGTTCGATTTCCCCAACCACCCTCTT 895 36 100.0 38 .................................... GAGCTGCGCACCATATAACTTGGGGTCACTCCCAATTG 821 36 100.0 39 .................................... GATGGTATTTAGTTTACATGTCTTGTAAGTGTTATTTAC 746 36 100.0 35 .................................... CTAAAAGATCATGTATTGCGTTTCTCTCGTTTCTG 675 36 100.0 37 .................................... AAGTAATCGATGACTGACTCTAATGAGTCGAAGTCAC 602 36 100.0 37 .................................... TCTGGGCGTTTTAGCGTTTTAGTAATCGCTTGTTCTA 529 36 100.0 42 .................................... GGCTACAATTAACAGGAAGTTATGTAAATGGTGTATTAGGTC 451 36 100.0 34 .................................... CTGAGGCGTTGCAGCGTTATCGGGGAAGAGCTTA 381 36 100.0 37 .................................... TAAAAGGACAGAAAATAACAAATCTTTTTTGAATTTA 308 36 100.0 35 .................................... AGAAGAGGAGGAAATATACCCAAATGAACATTACA 237 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 25 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTAGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CGTGCTTATAAGGATCAAAGTTACAAAGGAGTGACAGAGACCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //