Array 1 48021-46352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANNU010000002.1 Streptomyces sp. KAI-27 NODE_2_length_125108_cov_659.481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 48020 37 100.0 36 ..................................... CGCGCCCGTGCTCCCGAGCGTGAGCGCGGAACGGTG 47947 37 100.0 37 ..................................... CCGAGGACCCGGCCGCCCGCTGGTGGGCGGACCTTGC 47873 37 100.0 36 ..................................... TTCATGCGGTCCTCCTGGCGGTGGTTGGGGCGGGGC 47800 37 100.0 35 ..................................... GACTCCACCAAAGAAGCCCTGTCCGCCGCGGACGA 47728 37 100.0 36 ..................................... ACCATGGGGTTGCTCCTTGTGAAGGGGGCACTTGAT 47655 37 100.0 36 ..................................... GACCTCGCGGTCGACGCCTCGGAGATCGACTTCCTC 47582 37 100.0 37 ..................................... GCCGCTGGCCGTTGAGGACGCGCACGACAGCGAGGCG 47508 37 100.0 38 ..................................... TGGCTGAACACCTGCCCCAGCCCCGGGGGCGCGTCCTG 47433 37 100.0 35 ..................................... ACGGTCGGTCCTTTCGGGGCCGGGCCGGGCGGACG 47361 37 100.0 36 ..................................... ACCGTCGACCAGGTCGCCCGCGACGCACAGCAGGAC 47288 37 100.0 37 ..................................... ATGGAGTGGTCGGCGCTGTTTGCCGGAGCAGATCGGG 47214 37 100.0 36 ..................................... GTCGGGTACGGCGGAGGCAATGAGGCCGCCGGCGAC 47141 37 100.0 36 ..................................... CAGCTCTACCCGCAGCACCAGGCGGTGTGGGACACC 47068 37 94.6 37 ............T.....................T.. CCCTGCACGTCCCCCGAAGACTGGCAGCGCGGCCCGC 46994 37 100.0 36 ..................................... CCCACCCCTGTGAGGGCCGCTGCTGGAAGAGGCCGA 46921 37 97.3 37 ...A................................. TCCATCAAGGCGGGCAGCTCGCCGTCCTGGGCCGCGA 46847 37 100.0 36 ..................................... AACCTGATGTTCCCGGCCGGCGCGCTGCAGCGGGTG G [46831] 46773 37 97.3 36 ............T........................ GTCGGCGCCGCCGGTGAGGGTCGCCAGCGCGCTGCT 46700 37 94.6 36 ..............T..............G....... CGCGCGGTCGAGCTGCCGGGCAGCGGCACGGAGGGG 46627 37 94.6 39 ..............T.......A.............. ATCGGCAGCGTGACCAGCGGAGAACTACGCGAGCCGGGT 46551 36 94.6 36 ...................-..A.............. CGCGTCGCCGGGCACAGGGCCGGGGAGACCCGGCTC 46479 37 97.3 54 .............................G....... GCTTCGGCGGGGCCGGGAACTTCGTCGGACAGGGCAGCTCCCTGCGCCTGCCGG 46388 37 81.1 0 A.........T.......A..AA.T...........A | ========== ====== ====== ====== ===================================== ====================================================== ================== 23 37 97.9 37 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CGCCACCCGGGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACACCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCAGCCCCGAACACCTCACCGAACCCCCGCGCCAGACCAGCCGAACCCCGCAGGTGATCCACCAGCAGATGCCGCACACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCAACATCCCGGCCCCCTCATCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACAACCCAGACCACCCCGAAGCGACCAGCCAGACCGCCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAAGGAAAATGTCAGATTTGCTCGAAATCGGGCCTCGCTTAACTGCTGGCCGAGAGCACGCAGACAGACAAACCCCTGACCAACCAGG # Right flank : GGCTGAGCTTCACGGCCTTTCAGCACCTCGCACAACCCTTAGAATCTCACACTATGCGACGCTATAGACACTCAAAGCAGCGGGTGCCGACGGGCCGCCCGTACCTTCTGCGGGAGGTCTATGACAAAACCCCCAGCATCGACGACCGAATCTGCGCTCTCCCCGACCCCGCCGACCCCACCGAGTACGAGGCCATCGCGGACGCCCTGTGGGACCTGTTCCTGTCCACGAGGAATCTGGCGGAGCAGCGCAGCGGCACCGGTTGCACGCGTCATCCCGATGGGCCTGTCGACACCGAAGCCCCGGAGGACTGGGGGTTCTGCTTGCTCTGCAACACCAACCGGCGTCGGGGACAGCCCAGTTCGACCGCGGCGGAGAAGCCGCCCAAGCACGTCTGGGCCGTTCCGCCCCCTCCCTACACCCACGGGGCGCTTCTCCAGACGCGCCGAGCGCTGAACGACGCGCTCCTCGAACTCAACTACCGGGCCCCGGACGCTTCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 54349-54971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANNU010000002.1 Streptomyces sp. KAI-27 NODE_2_length_125108_cov_659.481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 54349 37 100.0 36 ..................................... ACTTTCCGTGGGGTGGTGCGGTCACCGGCCCCGGGT 54422 37 100.0 35 ..................................... CGCACCAAGCGGACCGAGCGTCGCGTCAACGCCGC 54494 37 100.0 36 ..................................... CCAGAAGCGGCGGGGGTTGAGCTGGTAGGTGCCCGA 54567 37 97.3 37 ..............T...................... GACGTGACGGTGATCGACGCCTCGCGGACGATGAGCC 54641 37 100.0 36 ..................................... ACCGCCGACGACGGGGCAGCCTCCGTCGCCGTCCTC 54714 37 97.3 35 ..........................G.......... GTCGACGACTGCGTCGGCTACGAGCAGCTGGTGGA 54786 37 100.0 36 ..................................... ACCGGCATCGCCCAGGAGGCGAGGAGCGCCGGTGTC 54859 37 97.3 39 ...............T..................... CTCGCTCACGTAGATCCGGTCGATCCGCGAGTCCGGGCC 54935 37 94.6 0 ..............TT..................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.5 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : GGCGTGGCGCGAGCGCAGCGAAGCCGACGACAGCGACGCCAAGGGCAAAGAGACCGAGATGGGCTCCAAGTACGTCGTCCCCTACGCCCTCTACCGCGGCACCGGACACTTCAGCGCCCCCCTCGCCCACCGCACCGGCGTCACCAGCGACGACCTCGCCCTCTTCTGGCGCGCCTTCGAGATCATGCTCGAACACGACCGCGCAGCCGCCCGCGCCAACCTCGCCCTGCGCGGCCTGTACGTCTTCACCCACGACGACGCCTTCGGCCGCGCCCCTTCCCACGAACTCTTCGACCGCATCACCGTCAAAGCCCGCGGCGACGCCAACGCCCGAACCTTCACCGACTACGGAACCGTCGAAATCCGCGACACCGACCTCCCGCCCGGCATCACCCTGACCACCCTCCTCCCGCGCACCACCGGATGACAACCCCACATACCAGCCCAGGCGGAGAGCGCGAACCCACCCAGATCATGCTCTCCGCCCGACACCCCCGGCA # Right flank : CCGGACCCACTCGGGGTCGAGGCCGCCGAACTCATTGGGTGGCGGTCGCCCTCCGGGGGCGAGGACGGCGTCACCCAGAAATCGATCGCCGAAGCCCTCGACCTCCATCGCGGCAGCCTGAACCACAAGATCCGGACCTACCGACAGACGGGTCGCTGGGTCGGTGTGCGTCAGCAGCGGGGGAGTATCTCCGAAGCCGACGCCGAGCTGCTGTGCAGCCTGCCCGCCCCACGGCAGGGGGAGAAGGTGCTGGAGCTCTTGGAAGAGGCGACCTCCGGTGCCATCGTGAAGGGCCTCGGGACCACGGCGAACGGCCTCAAGACAAGCGTCGCGGAGTACCGGGACACGGGTCGGTGGACTCCCCCCAGGCGCATGATCTCGAAGGCCGAGGCCCTGCGCCTGCGGGGAACTCCGGTGCCCCAGCAGGGCGGGCAGATTGAAAAGCTGCTCGCCGCCAACGTCAAGCTGATTTCCATCGCCCACGCCCTCGACCTGCGTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6040-5890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANNU010000060.1 Streptomyces sp. KAI-27 NODE_63_length_33222_cov_495.309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6039 28 96.4 33 .G.......................... GCTGGGTGGCGTCGTCGAGGTCGTCGCCGGTGG 5978 28 100.0 33 ............................ GCACCGCCTCGCCGTCGGCGTCCGCGCCGAGCA 5917 28 82.1 0 .....................TG.CC.A | ========== ====== ====== ====== ============================ ================================= ================== 3 28 92.8 34 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CGACGCCGACATCACCCGAGCCGTCGAAGCGGGCGCCACCGGCTACCTGCTGAAAGCCGAACGCCCCGAAGAACTCTTCACGGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCGCCGCCTGTCGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCCGAGCTGACGCCGAGGGAGCGGGACATTTTGCGGCACCTTACGCAGGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATCTATCAGAAGTTGGGGGTGGAGACGCGGTCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGGTGGGTGGCGGGGGTGGGTTCGTGGATTGGGGGGTGGGTGGGGTGGGTTGGGGGCGTAGGTTGGGGGGTGCGAGGGAGGGGGCGGTGATGAGTAAAGGGATGGCAAAGGCCATCTGAAGGTGCAGGTGGGGAAGG # Right flank : GGAACCGATGCAAGGCCGGTGCAGCAGACAGGTCACGCCCGCAGGCGCAAGAGCCCCGTTGCGGAACAAGTGACGTTCCCGGGTTGGCCGCTGATGTCCAGCCGCCGCAAACCCGGCGGCCGAGTGGGAGCGCGAGTACTAGCGCCCGTCCCCGACGACCCTCTCCACCTCCCCCAAAGCCTCCCCCCACCCAAACCCAGCCGCATCCCCCCGCTTAGGCAAATGCGGCTCCCCCTCGGTGAAGACCACCCGCACCCCCTGCCCCCGCAAGGTCTCCACCGCCCGCCCCACCGCAGGCTGCGCCCCCAGTGCCGTGGACCAGAAGGGTGCCGCGACCACCGGCACACCAAGATGTACGGCCTCGGCCGGTACCCCCAGCGCCACCGTGTCCGTGATCCCGGCGGCCCACTTGCACGCGGACGTGGTGGTGAGCGGCGCGACGAGCATGGCGTCCGCCTTGGGCAGCCCGCCGGACTGGCCGGGAAGGGTGTACCGGTGCC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //