Array 1 27423-26005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHID01000001.1 Staphylococcus pseudintermedius strain SP129a Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27422 36 100.0 30 .................................... GGCTAAGTATATTAATAAACTTAAGCAAGA 27356 36 100.0 30 .................................... TCCACCCTCACTGTCTACAGTAACAATTTC 27290 36 100.0 30 .................................... TTATTTTAAGTTACAAGTTTTAGCAAATAA 27224 36 100.0 29 .................................... AAATAATTTGGATAGATCAAAAATGTGCT 27159 36 100.0 30 .................................... TGTATGAGATGATACCCAAATTTAGAGCAT 27093 36 100.0 30 .................................... TTTAATTGATGTTATCGCAACAGGGTCGCG 27027 36 100.0 29 .................................... TTATCGCATATTGAAATATATGCAACGAT 26962 36 100.0 30 .................................... ATCTTTTCTACCTTAGGTACATGTTTGTCA 26896 36 100.0 31 .................................... AGCCTGGAAGTGCCCCAATGTCGTCTGAAAC 26829 36 100.0 30 .................................... AGATATAGAGGTTATCATCAATAGCGGCGG 26763 36 100.0 31 .................................... ACAAAGGTCCTTGGACTGGTCACCCACAAGC 26696 36 100.0 29 .................................... TGAATTGGTAGAGTGGACAGTGAAGGCAG 26631 36 100.0 29 .................................... TTAATTTTTCCATTACTTCCAACCCCTTT 26566 36 100.0 30 .................................... GCGACAACGCCGAGTGGAATGATGTACGAC 26500 36 100.0 29 .................................... CTTTCTAAAAAACGTTGATACGCTTCTTT 26435 36 100.0 29 .................................... AATAAAAAAGGGGAATAAAGCAGTTATAT 26370 36 97.2 29 .............................A...... AATGTACTTGAAGAGCTAACGAATATGTA 26305 36 97.2 30 .............................A...... CTCACAAACTAAGCCCGTATGTTTTTAATT 26239 36 97.2 29 .............................A...... ATCAAATTGCAATGTTGCAACCATGTGTA 26174 36 97.2 29 ............................A....... TAAAATCGTGGCACATTTTATTAAGTAAC 26109 36 97.2 31 ............................A....... AAAATATTTAGCGGAATCTTTACAGGTCAAT 26042 36 88.9 0 ..........................A.T..C..C. | C,C [26012,26015] ========== ====== ====== ====== ==================================== =============================== ================== 22 36 98.9 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCGGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATTGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : TTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //