Array 1 214668-216587 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTW01000002.1 Salmonella enterica strain BCW_4014 NODE_2_length_351969_cov_4.02798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214668 29 100.0 32 ............................. AAACTGTATATAATGAGATTATGTCTCAATTA 214729 29 100.0 32 ............................. AAACGTCTGGAAATTTACATAAATTAATGCAA 214790 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCGTTTAAT 214851 29 100.0 32 ............................. ATTTATAAATTCAGTAGTAGAAAATAATTCAT 214912 29 100.0 32 ............................. ATGGAACTGTTGATAAAACTATAGACGACGAA 214973 29 100.0 32 ............................. ATCAACCCTCAAATGTGGTTATTTGCGCAGGC 215034 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 215095 29 100.0 32 ............................. GTTCGGATATAGAATATAATTTAAAATCGATG 215156 29 100.0 32 ............................. CATTACAGTCAGCTACATTAAACAATGTTCGT 215217 29 100.0 32 ............................. GGTAATCATAATCAGATGCATCCACATATTTT 215278 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 215339 29 100.0 33 ............................. AATTCTCGTTTACACACACATCACCGGCTACGC 215401 29 100.0 32 ............................. TGTGATTTACCGCTTTCCTTATTAATCGTTCG 215462 29 96.6 32 ............................T GGCGTAATGTTTCCATTGCAGAAACTGCGGGC 215523 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 215584 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 215645 29 100.0 32 ............................. GTCTGGGATAATTCAGCGGGTACGGCGATATA 215706 29 100.0 32 ............................. CAGCGAAACCGGAATTAAACCCCGCGAACCTC 215767 29 100.0 32 ............................. GGTTTGTTATGCCTCTGACACCGTTTCAGCGC 215828 29 100.0 32 ............................. TATATTGCGGCGCAACAACTGAAAAACAGGCG 215889 29 100.0 32 ............................. TTGCCTTTAAAGTGGGTGTGAGCATGAGACAG 215950 29 100.0 32 ............................. TTCCGCCATGACCGTTTCAGCCTCCAGCTTTC 216011 29 100.0 32 ............................. ACCAGAAAATTTAACTATATCACCTTCGGACA 216072 29 100.0 32 ............................. GTCCGTTCGTCGGCAGGCGTGGTCAGGTCAGG 216133 29 100.0 32 ............................. CGAGATGTCGCGGTCACTGGCTTTAATCCAGC 216194 29 100.0 32 ............................. ACCGTCAGAACCCTCACACCACGCTTCGTGCT 216255 29 100.0 32 ............................. CAGTGATGAATGCAGCCGGTAACACGGCTGTG 216316 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 216377 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 216438 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 216499 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 216560 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233135-235118 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTW01000002.1 Salmonella enterica strain BCW_4014 NODE_2_length_351969_cov_4.02798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233135 29 100.0 32 ............................. ATTATTATAATTGGATGTTACCATTATTTTGC 233196 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCTTTTAAT 233257 29 100.0 32 ............................. TATCTGTATAAATTGTTACACCGTTTATAATT 233318 29 100.0 32 ............................. AAATCCAGATAATTTTACACCCCCTGCACCTC 233379 29 100.0 32 ............................. TTGATGTTGATATTATTTCATTTTCTGAAAAT 233440 29 100.0 32 ............................. GTTCTCGGCCGTGTAACATCTACCGCCCAGAA 233501 29 100.0 32 ............................. GGCTGGATTGTCAACGCCGCCAACATCAAAAA 233562 29 100.0 32 ............................. CGTCGATGACCCTACCAAATGGCGTAAATGCT 233623 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 233684 29 100.0 33 ............................. CGGGGTTGCACCGAGTTAGTAGCATACTTGCGG 233746 29 100.0 32 ............................. GGGGAAAATTGCTGTGTGATATAGACGAATTG 233807 29 100.0 32 ............................. GCGGAAGCGCCAGGATACCCTGAAACGCTACC 233868 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAA 233929 29 100.0 32 ............................. TAAATACTCAATCATTAACCGAAGTTACGTTT 233990 29 100.0 33 ............................. TCGCAACCCGCCTTATTTAATTATTGAAGCGGC 234052 29 100.0 32 ............................. GAATATAGTTTCATCGTTATTTGTGACGTCAT 234113 29 100.0 32 ............................. GGTAAAGAGCCTAAATATTTTATATTAGATGA 234174 29 100.0 32 ............................. CGTAAATACCACTACTGGTTGATTGCATTTGC 234235 29 100.0 32 ............................. AATTATTAACATTATTTGTTGTCTGTTGTTTT 234296 29 100.0 32 ............................. GCGGCACCTACGTCTGTAAAGAGCTGGTTTAT 234357 29 100.0 32 ............................. AATGAACGGAAGATATGGAGCACAAAAATGAA 234418 29 100.0 32 ............................. GCTGAGTATGCTGCTGATTTTCCTGGTGTTAA 234479 29 100.0 32 ............................. TCGGGCAAAAAAAGCGTGTTCACCGCTGCGCC 234540 29 100.0 32 ............................. GTGCGTGTAGGGAATGATCAGCGTATCGGACA 234601 29 100.0 32 ............................. CAACTTTGGATCGTTTATATTCATCGATATCC 234662 29 100.0 32 ............................. CACCTGGTAAATATTTTTCTAATCAGTCGATA 234723 29 100.0 32 ............................. CCAGCTGACAACCTGGCGTTTGTGGTTCGTTA 234784 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAAGATGAGC 234845 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGCAGCG 234906 29 100.0 32 ............................. ACGCCTTCGTAGCATACCAGCTTGCTTATAAA 234967 29 100.0 32 ............................. TTTTGGGCGGCCCTGGACACCCGACGCGGCTC 235028 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 235089 29 100.0 0 ............................. | A [235116] ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //