Array 1 30389-31858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMF010000008.1 Providencia rettgeri strain 2020EL-00106 NODE_8_length_41304_cov_32.559390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30389 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 30450 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 30511 28 100.0 32 ............................ ATGTATTCCGCTGAACCTCCCCAAGCTTCACA 30571 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 30631 28 100.0 32 ............................ TTGGGCTGCAAAGAAAGCGGAATCAATGCTCC 30691 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 30751 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 30811 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 30871 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 30931 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 30991 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 31051 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 31111 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 31171 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 31231 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 31291 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 31351 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 31411 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 31471 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 31531 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 31591 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 31651 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 31711 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 31771 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 31831 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.6 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40496-41003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMF010000008.1 Providencia rettgeri strain 2020EL-00106 NODE_8_length_41304_cov_32.559390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40496 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 40556 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 40616 28 100.0 32 ............................ TCATCGGGCTCAACAATACGGCCATCAAATGG 40676 28 100.0 32 ............................ AATGCAAAGATGACCACGGGTTTAAATATTTC 40736 28 100.0 32 ............................ ATGAATTAATGGTGGGGTATGTCTTACTTAAA 40796 28 100.0 32 ............................ TCAATGTTTAATAGGTCGTCTTTTTCTTGATA 40856 28 100.0 32 ............................ TAATGAGTCTACCCAAACTTGGATTCGTTGTT 40916 28 100.0 32 ............................ ATAACAGCAACTGAATATTTCGACGCAAAACC 40976 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGGTGGGTTAAATCTCAACCTTGCTGCTTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATTCCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //