Array 1 36480-36085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESIM010000037.1 Rhodovulum visakhapatnamense strain AB26 NODE_37_length_44599_cov_7.36852_ID_5833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36479 29 100.0 32 ............................. CCGCCTCGCTTTCCGGCGGCACTGAACGGTTG 36418 29 100.0 32 ............................. GACCGGCAAGGTAGCCAGCAGCCGCGATGTCG 36357 29 100.0 32 ............................. CCGGGAGACGGGACCGATGGAGACATCTGGAA 36296 29 100.0 32 ............................. CGGCAGCGCAGGATCGACGCGTGGGCCGGGCG 36235 29 100.0 32 ............................. CATGGTCGCGGCCAGCAGGCTGTTCTGATCCT 36174 29 100.0 32 ............................. AGCGACTGCGCGCAGGCCGACGAGGCGACGGT 36113 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GGTTCCCCCGCACCCGCGGGGATAGACCC # Left flank : CCGCCAGACAAGTGTCCGAGCGTCCTTCCGAAAACATCGAACGCGTGACCCGTCGCATGACCGGTACTGCGCTCAGACGGGATGGTATCATCCCGGACATGATCGAAAGGATTAAGGCGTTGATCGAAGGGCGCGGGTCCTGATGCCGCTGACCATGATCGTCACCCGTGACGTCGAGATGCGCTACCGCGGGTTCCTGACGTCGGTAATGCTGGAAATCGCTCCCGGTGTTTATGTCTCGCCGGACATGTCGGCGGGTGTCCGGCAGAGGGTCTGGTCCGTAATGAAGGACTGGTGGTCGCAGCTGCGGCGCGGTTCTCTCGTTCTGGTATGGCGGGATCCGGCCTCGGTCGGCAATTTGCGCATAGAGACCCTCGGCGAACCGCCCAAGACAATCGTGGATGCCGACGGCTTATTGCTCGTAAAACGAAAGTGAATGACGGTCCACTCATCCGTATGCTCTTTGACATTGCTGGTATTTCAACATATTGAGCCCAAGA # Right flank : CAGTGGGTGCGCCGCTCGATCTTGAAATGGCCGAGGCGGGCGGGATCGGCGCCGATAAGCTCGAAAATGCGTTGCTCGGGGTCAGCCAGCGCGTTCAAGGTGCAACGCTCGCCAAGCGCCCTTACGACGCGCCACTGACCCGGGCGCGTATCCTGGAATTCATCGAAGATGATTCAGGGCCAGGTGATGGCAGTGAGCGCTCGGAGTTTGGCGGACCCCTCGGCGGGGTATTCTTCCGAGCCGAGATGGGTTCTCCGGGGCGTCACCGAGCCCGCGCAAGGGACCCAGAGGCCGCCGTAGTCCGAGAAAACCACCGGCCTGGTCGACACCGGCGTCAGATTTCCATCGGCATCCTGCGCCAATTCGCTGACATGCATCGCGCCGGGCCGCGATTCGAGATGGGTGACCGAAAAGATCTTGTCGCCGATATGCAGCAGCGAGATGGAATCGGCGTCGACCGAGACATGGTCCGAACCGTCTTCGGATTTCACCACTTTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 7047-8930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESIM010000081.1 Rhodovulum visakhapatnamense strain AB26 NODE_81_length_15984_cov_7.8694_ID_5921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7047 36 91.7 30 TG.............T.................... CGAGGTGGACGGCGATCACCGCCGCACCCG 7113 36 100.0 30 .................................... CGCGGCCTCGTAGCTGATGGTGGTGACCTC 7179 36 100.0 29 .................................... CCTATAACGAGCATCAGGTTTACCGGCTC 7244 36 100.0 30 .................................... GAGGAGCAATCCGAAATCCCGGCACCTCGC 7310 36 100.0 30 .................................... TGTTTCAGTGCAGCCATGATTTTCTCCTCA 7376 36 100.0 30 .................................... TGTAAGGTCTCTGACCTGTTCTGCAAGCTT 7442 36 100.0 30 .................................... CTGATCCGTCTCCTGCCGCAGGGCTATCCC 7508 36 100.0 30 .................................... GGTCCGCGAGGTCCTTCTTCTCGCTTTCCA 7574 36 100.0 30 .................................... CCAGTCATGCGCCTTGTTATCCTTGCCCTT 7640 36 100.0 30 .................................... GCCATGCAGGACGATTTCCCCGCCCCTCCC 7706 36 100.0 31 .................................... GCGGATCGCGACCACCTGCACCGCCAGCGCG 7773 36 100.0 30 .................................... TGAATGCAACGATGGTCATCATCCCCACGG 7839 36 100.0 30 .................................... GCGCTTGCACCAGACGCACAGGCGCGTCTC 7905 36 100.0 30 .................................... GGATGTGGGAACGGGTGCATAGCCGCGTGC 7971 36 100.0 30 .................................... CGCATCGACCACGGCCCAATGGGTGCCGGT 8037 36 100.0 30 .................................... GCGTCGAATGACCATACGCTCGCAAGCCCT 8103 36 100.0 30 .................................... TCAGCCGCGGGTCTTCGGACAGGTTGTGCT 8169 36 100.0 30 .................................... GCCCGGCGGAGAGGGTCGGGCCATGGCATG 8235 36 100.0 30 .................................... CGGCATGAGCGGACGAGCGCCCGTGCCGTA 8301 36 100.0 30 .................................... CGGGCGGGATGAAGTGCGCGTTCAGTCCAC 8367 36 100.0 30 .................................... CCCACCTGCGAATGGCCCGCCCGCATGGCG 8433 36 100.0 30 .................................... GACCCGGACCTCGGTCGGTCATTACACAAT 8499 36 100.0 30 .................................... TTCCAGATCCGGCTAACCGAGTGCTGTTTC 8565 36 100.0 30 .................................... TGGAGCATCAGATCATTCGCGACACAAGCA 8631 36 100.0 30 .................................... GGCATGTATGTCGCCCGTGACGCTTGCGAA 8697 36 100.0 30 .................................... AGACACGTAAGCACGGCGCTGTTCGTCGAT 8763 36 100.0 30 .................................... GGAGGAGATGCGGAACCCGTTCTCCCCGAT 8829 36 100.0 30 .................................... CTGGACGCTGCTGCCCTCGCGCGCGCAGGC 8895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.7 30 GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Left flank : GCTGGGCCGATTCCGATGGCGATTGCCTCGATACCCGCGCCGAGCTGCTGGCGGATCTCTCCACCGTGCCGGTCACGCTGGCGCCCTCGGGCTGTTCGGTGCGCCACGGTCGCTGGATCGCGCCCTATACCGGGCAGGTTGTGGCCGAGGCCGGAGATCTCGACATCGATCACATCGTGCCGCTGCGCTATGCGTGGGATCACGGTGCGACCAGCTGGTCGGCCGAGAAACGCGCTCGCTTCGCCCGCGATCCCGTCAACCTGCTGCCCGTCAGCGCCTCGGCGAACCGCTCGAAAGGCGCGCGCGGGCCGCTCGACTGGCTGCCGCCCGATCAGGGCTTCCGCTGCCAGTACGTGCTGCGGTTCCGGCGGATCTCCAAGGCCTACGGGCTGGCGTTCACGGCTGCTGAAGAGCGGGATCTGGTGGCGCTGACCGGGCGGGTGTGCGGCGTATAAGCGCGAGTGCCTTTGTGCCAAAGGCGCTAATCAGCCATTCACAAC # Right flank : TGGTTCCCTCCCCAAGACACCGAAATTACGGCGTTTTTGGGAGTGGGGGAGTGTGAAAATCTGGGGAACCATCATCAAAACAGCACCAGTTGTTCCGGATTTTTCCGGGCAGATCTGCGACCTTGATCCGAGAAGTGTACGATATCACGGTATTGCCGGTCCGTGAAGCTGAGTATCTGAATGTCACCCTTGTTGGGCAGATGCCGCTCGATTCGGTTCACCCGCGTCTCGAACGCGTCCTTGCCGTTCACGAACCGCGCATAGACCGAGAACTGGCTGCGTTCGAATCCTTCGTCCAGCAGGAAATTCCGAAAATCCGTTGCCGCCCTGCGCTGCGGCTTGGTGTCCGTGGGCAGGTCAAACATCACGAGTATCCACATTATCCGATATCCAGACAGAAAGGTGGGCGCGGTGGTCATGCCCCCAGCCCCGCGAGGGTAAGCGCATCGGGTGGCATAGGCAGGGCGAGGTTCAGTGTTCCGGCTTCGAAACTCTGGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //