Array 1 107390-110224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTL010000004.1 Corynebacterium sp. TAE3-ERU2 Seq4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107390 29 100.0 32 ............................. CGGCGGAATGCTTCTACTGGCGTCATTGCTGG 107451 29 100.0 32 ............................. CCGCGATCGACTGCGAGGCCACACCAGCCTTC 107512 29 96.6 32 ............................G AGTCTGACGAAGACTTCATGATTCACATTAAG 107573 29 100.0 32 ............................. AGTTTGAGCGCATCGGAGCCTTTAGCCTGGTG 107634 29 100.0 32 ............................. GGGGAATGTGGTGCTCGGCCTCAAGGACCACC 107695 29 100.0 32 ............................. CGGTGGTGACGCGGGTGAAGGTGGATTGACGG 107756 29 96.6 32 ............................G AAGGAGAAGGAGGCTGAAGATGGGGGCAGCAA 107817 29 96.6 32 ............................T GAAATCAGAGATAGCGGGGGCCACCGTGCCGA 107878 29 100.0 32 ............................. CTCGCACCGCTGAACCCCGCGGGGCCGGATGA 107939 29 100.0 32 ............................. GACGAATCGGCAACGTCACAGCGCGCATAATC 108000 29 96.6 32 ............................G GTGGCCTCTAGGGTGGCGTTGTACTGGGCGTC 108061 29 96.6 32 ............................T CAGGCGGTGCACTGGCAGCCGGGCCAAGGCTC 108122 29 96.6 33 ............................T GTGCCGATCACGTAGCCGTGATTGGTGAGGGTG 108184 29 96.6 32 ............................G GGCACACCCCTGCAGGACCTAGAGAAAGCACT 108245 29 100.0 32 ............................. AGACCCCCGCTCCTGCCCCAAAACCGGCAGGC 108306 29 100.0 32 ............................. CTGCTGCGCGCGTTCGAGGGCACTGTGACTGG 108367 29 100.0 32 ............................. TGGAAAAGGCGTGTAAGGGGCCGCATCCCGAT 108428 29 96.6 32 ............................G GACCACACCAATGAACAGCCTGTTCAACAATG 108489 29 96.6 32 ............................G AGGATGGACCGCCGATCGGGGGCGTGAGTGAG 108550 29 100.0 32 ............................. CCCTCGCTGGGCTATTTCCTCGACTGGGAGTG 108611 29 100.0 32 ............................. GAGCAGGGCATTCAAAACAGCTCGTGGACTAT 108672 29 96.6 32 ............................G GGGACAGACACGATACCGGACGGCATCGGGGA 108733 29 100.0 33 ............................. CCTTAAACACCGGCGGGTTATCCACCTGTCCGT 108795 29 96.6 32 ............................G TTGCTCAAGCGGTACGTTGATAGGGCACTGAA 108856 29 96.6 32 ............................G CGCCAAGCGAGCCCGGACGCCCTCTCCCGAAT 108917 29 96.6 32 ............................T TCCGGGCAGCCTCCAGATCATAGAAACCAGCG 108978 29 96.6 32 ............................G CGCCAAGCGAGCCCGGACGCCCTCTCCCGAAT 109039 29 96.6 32 ............................G GACGTCGCCGCGGTGCTCTCCGATGTGGATGG 109100 29 100.0 32 ............................. CCACCCCGCAGCCCCGACACACACCACCGTGC 109161 28 93.1 32 .....-......................T TGGGGATGTGTGGCCAGTGGCGGGCTAGGACT 109221 29 100.0 32 ............................. GCGTGCTTCCCAGTCACAGTACTCGGCGATGT 109282 29 100.0 32 ............................. AATGACTGCACATAGCCTCGAACGGAAACACC 109343 29 96.6 32 ............................G TATCGGGGGCGTGCTGATGCCCCCGCACCTGT 109404 29 96.6 32 ............................T CGGGGTAGTGCTCATCAATCTCGGCTACGATC 109465 29 96.6 32 ............................G ATCTTCCAGCGGATTACTGGCCCGAGGTGTAC 109526 29 96.6 32 ............................T TCGACCCCGACCGCGACATTCTCACCCGTATC 109587 29 96.6 32 ............................A ATGCGGCGATGCTGGCGAGCCATGCGATGTTG 109648 29 100.0 32 ............................. CCCACGCCCCGACCTGCCGCGCGCCTGGAATG 109709 29 96.6 32 ............................G GCGCGATCGACGCACTACTGAAAGGAACCCAA 109770 29 96.6 32 ............................G GCGCCGACGTAGGTGAGGCCGGTCGTGAAGCT 109831 29 100.0 32 ............................. GGCGGGTATGGCGACGTATATGGCGAGGGGTA 109892 29 100.0 32 ............................. TCACCCCCTCTCTATCGTTTGGCAGATGGCGG 109953 29 100.0 32 ............................. CTCTACGCGGTGCTTAGCGACCGCGAAAGGAT 110014 29 96.6 32 ............................T CCCGTCTAGGCGGTATGAGGCGTCGCCGATGC 110075 29 100.0 32 ............................. AGTCCGACGCCACCTGGAATACATCGCAGACT 110136 29 96.6 32 ............................G TTCCTCGGCCATCGTGGGGAACTGCGAGCGCA 110197 28 89.7 0 .....-....G.................T | ========== ====== ====== ====== ============================= ================================= ================== 47 29 97.9 32 GTTTTCCCCGCACACGCGGGGATGAGCCC # Left flank : TGTCCTGACCGCGGATGCGGAGTTATTGCTATGGAGTGAATTGGAGCTTGTGTCCTCGGGTGTTTCCTGGGCTGAACCGGCGAGTTCATCATGATCGTTCTCGTAGTAACAGCGTGTCCTGCAGGCTTACGGGGAGATCTGACTAAGTGGCTCATGGAGATTGCGCCGGGCACGTTTGTGGGAACTCCTTCAGCCCGGATCCGTGACCTGCTGTGGGATAGGACCGTAGGCCTCTGTAAAGATGGACAAGCCCTTCTCGTGTATTCCGCTGACTGCGAGCAGGGCTTCGAATTCAGGACTCATCGCCACAAATGGATGCCTCGTGACTTCGAAGGCCTGACCTTGATGGTTCGCCCTGGAGCGACGGACACTCCACGGCGACGTACTGGATGGAGTAATGCCCGACGCCAACGCCGCACTTACAGATCGAGGTGAAAACTTCCCACTACAAGTTGTAGCTATTCTGAGCTAGGAGCTAATATTTCACCAGCTCACTAAGT # Right flank : TTACCATCTCGTGTGGCCTAGCCCCGCTACCCAGTTATCTCTAAGGGCTGCCACCGGCTGTGTATGCAGAGATAAAAGCGTGCGCTACGGGCTGCGGAGCGTGGGTGGTGTCTATTGCGCGTCGGTGCGCGGCGTGGAGGCCGCTCTCAGCCCGCACTGCCGTGTCGCTGTTGGGTGAACTGGTTCCGGTGGCACAGCCACCATTCAGTCAGTGGGCCCGAGCTCTTGTGTTTGAGTACTGCAGGTGAACATCGTGTGGTGTGTGAATACGGGCCAGGATGAGAGTGCTCAAGCCAGGATACCTAGACTCCCCACGATCACCTTCTATGTCCTCGGTCATACTCATCGTGTGTATCGATCGCACAGGCGCCCAAAGAACACCACCTCAGAGCACGTCCCAAGAACAGCTGTCACCTCAGCCTGCAGTAGTCCCAGCCACAGATGGGATGCGGCGGTGGTGTCGCGGTATAGGCAGCCGTCGTGGGCGGCGCGCGAGGAGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29458-28460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTL010000006.1 Corynebacterium sp. TAE3-ERU2 Seq6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 29457 36 100.0 28 .................................... TACACAGCTACGTCCTTTCAGTCTGGTT 29393 36 100.0 28 .................................... TTGTCCCCGGATGGTGTCGAGATCAGCT 29329 36 100.0 28 .................................... CACCCTGGTACCCATCACCCCACAGCGC 29265 36 100.0 29 .................................... TACCTCGGTCACATAGTCTGGTGTGTCAT 29200 36 100.0 28 .................................... CGCAGGTAGTGGTAAGCGGCGAGCACCA 29136 36 100.0 28 .................................... GGCTGGGGTCGATCCACTCGCCGCGCCG 29072 36 100.0 28 .................................... CGCCCAGGTGCCGGCCGGGTACAGGATC 29008 36 100.0 28 .................................... AACTCGTACTCTTCCAGTACGCGGTCCC 28944 36 100.0 28 .................................... ACGGCTCACGAGTGAGACCAGAGTTACG 28880 36 100.0 28 .................................... CCGACGGGAAACCACAGTGGAAAGAGGA 28816 36 100.0 28 .................................... CTCGTCGCCACGATCACCCCACTTTTTG 28752 36 100.0 28 .................................... GTCGTAGAACTCTCCGAGCGCCCCCTCC 28688 36 100.0 28 .................................... CGAGCTACCGATACACCGAGGGCCGCGC 28624 36 100.0 28 .................................... CGCTTGATCACGGTGATCGCGTCCTCAG 28560 36 100.0 29 .................................... ATAGGGCGGGCAGGTAGTCTTGCATCCAG 28495 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 16 36 100.0 28 GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Left flank : CGTTCAACAGCGATGGCCAGAGCGTGTCGACGGTCTTTCAAGACTTTGCGCAGCATTTTGGTCTGTACGTCGAAGGAACAGTGGATCGGCTACAAGTCCCGCGTTGGGAAGGGCAGCTCAGTGCCGGCGAAGGACAGTGAACCGGTGTGGTGCGTCGTGATGTTTGACCTTCCGGTCAAGACCAAAAACCAGCGTAGGGAAGCTAATCGCTTCCGCAACCGGTTGTTCGACCTTGGTTTCTGCCGCGCCCAGTACAGTGTTTACGTTCAGTATTTCCCACTGGCGGCGCGTCTCAGCACAATCGTGAAACAGGTGAAAGGCGAACTTCCCGCAGGCGGAGAAGTGCGCATTTTGTCCGTGACGGACCAGCAGTGGGCAAAGGCGATCCGTTTTTCGAACCACAAGGAACAAGCGGTCGAGGAAATCCCCTCTCAACTCACAATTTTTTAAAAACGTATGCTGAAAAAGACCCAGTTCAGACCCTGTTTCTGGGCCTAACT # Right flank : GAAAATGGGCATAGTGGCGGTCTCGGTGAAAGCCTATGGCGGTGCACCACGCTTAACGGCGGTACCGCTTTCCACGTCCTGCGCTGCGATGATCCCACAACGACAAGCCTGTAGCTGCAGGATCACCGCCTCGCGACCTACCGCGTCGCCTCCTCCAGCAGGTACAGCACGTGCTCATAGCTTCGCCCGGTGATTTGTTCCATGCCCAGCTCGCAGGTGCGGTTGGAGGACACATAGGCGTCCACGCGCCCGTTGGCTTCGGCCTCGGCCAGCCCGGCGCGCTCGTCGCGGGTGGCGGCGTCGAGGAGCTCGGGGTGGAGCATGCCGCGGTCGCCGGCGGTGCCGCAGCAGCCGGCGCCGCGGGGCACGAAGGCCTCGTCGGCGGCGAAACTAGCGACGCGCACGAGGGTGTCGCTGAGTTCCATGTGGGCCAGCGAGCAGTTCGGGTGCACGGCCACCCGCCCGAGGCGATGGGTGGGTTCAAGGTGCTCGATCAGCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //