Array 1 191198-191346 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZJ01000001.1 Serratia rubidaea NBRC 103169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 191198 28 100.0 32 ............................ GGTAAAAATCATCTAGCCTTGGCTATCGCCAA 191258 28 100.0 33 ............................ CTGAAATACTCGACGAATTAACACGGCGATTTG 191319 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGAATTTTATGTGATCTCTGTTGGTTACTGTCCCCAGGGCTGCTCGCTGACATACTGCAGGAAGCTCATCATACCCAGGCAAACCAGTACGCCAACCATTACTATTATCACTAATCTCATAATGTTACCTTCCAGTCGTTTGGTTATCTGTTTCGTTATTCGCACGCCGGCAGGCGTGTGAGTAAAGCAACTTATCTGCCTTACGAATTATTGGCGACCCAGTATAACCAGAACTGGCCAAGGTTGGGAGTCAGGCGGCTAAAGGGTGGGAGCGAGGGCGTAACAGCGGGGCAGATATTTACTATCGGCATAATGGCATCGGGCTAGCCAGGTCGTCGGCTGGTTGCTTTATGATCCGGACTATGCAAACCCTTTTTTTTACGATGTTTCTAAGTTATTGATATATATTGGTTGAATTGAATGCGAGAAAAAGAGCCTTTTCGGGCGTAATCGGCAGGAGTGCTTTTAAAAACAATAGGCTAGTGCTAATCTGCAACA # Right flank : AGACAGCAGGGAGCAACGACAGAACGCCGGATGGTTCAGCCGCACAGGCAGCTCCGTCCCCTTGCTGTGATTCTTATGCCTCAACGCGATGACAAACCATTTCGATATTGTGGCCGTCCGGCGCAATCACAAAGGCAGCGTAGTAACTGGCGTGATAATTGGGACGCAGGCCTGGTCCGCCGTTATCTTTACCGCCGGCCGCCAGCGCTGCCCGGTAGAAATCATCCACCTGCCGGCGGCTGTCGGCGATGAACGCCAGATGCAGCTGCGCCGGCTGCGCCGTGGTCTGGTACAGGCACAGTGAGGTATTGTCGGGGGCGGCGATCTCTATCCCATAGTCCGGCGCGCCTTCATCCACCACGCTCACGCCCAGCGGCGCTAGTGCCTTAAGAAAGAAATTTTTGCTGGCCTCATAGTCGCTAACGCCAAATTTTACGTGGTCAAACATAGCTTCCCCTTACCCGTGATGAGCCGTGCGCTCACTCCAGTATAGCCGTGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1012576-1012248 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZJ01000001.1 Serratia rubidaea NBRC 103169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1012575 28 100.0 32 ............................ GTTTGCGACAAACCGGTGTCACCGGAGAAATG 1012515 28 100.0 32 ............................ AACATGTCGAACATCCTCACCGGCAAAAACGA 1012455 28 100.0 32 ............................ ATCGGCTAAATCTTTCCGATGCGGATAAATCG 1012395 28 100.0 32 ............................ ACCACGCTTCAGCCGATCAGGCCACTTTGATG 1012335 28 100.0 32 ............................ TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC 1012275 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCACACTGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGTGTGGTGGTCTGCTTAGGCGCGGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCGAGTACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGATTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGTGCTAAGCGAGGAGGCTCGCGCGACAGAGAGCGGCAACGTAGGGTTGCGCCAACAACCCTTTTTTTAGCACTATGCGTAACTTATTGATATCTAATGGGCGTCTGAGCAGGCGTAAAAAAAGGGTATCGGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAGCCGCTGGCCTTAAACTCTAACA # Right flank : AAAACACTATATTTTCGTGACCATCTTTATATTCGCGACCTTATTGATGGTATAGGGTATTTTTATTGAAAATATTAGGTTTTTATGGAGTTAGGATGAAATATGGAAATGTTAAATAGACTATCCGCTATTCTAAGTTTACCGTTAACCCTGCTGTGCGTGTCGTTCTCATCACTGAAGATTATGGGAGCAAACAACTCACTGATGGATGTTTTCCTGTCGGTGATTGTTCTGCTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGGAAACGATAAACGGTCAGATTAAATAAATCGCGCCTTTGACCATTCCGGCAAGCCGCATAAACAACGGGAACCCTGGGGTTCCCGTCGTCGATTAACCATCATGCCGCAAAAGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGTATCCTCCAATACTTCAAACAGGCGGTCGATCTCCTCGCGGGTGTTGTAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 171428-172379 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZJ01000003.1 Serratia rubidaea NBRC 103169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 171428 32 100.0 34 ................................ TCGCTGCTCGTTGCTCTTACGCTTAGCCATGCTC 171494 32 100.0 33 ................................ ATCTACATCACCGGGCGCAATGTGGCCGGCGGC 171559 32 100.0 34 ................................ CCATAACTCACACCACAAATTTACTGTATTTATA 171625 32 100.0 33 ................................ TCATCACTGACGCAGGCCATTGTGAAAAATCTT 171690 32 100.0 34 ................................ GTGAATATCAGCGGGTTCAGCATGCGCAGGCCGT 171756 32 100.0 33 ................................ TTCTCAATACGAGCTTTGCGGTTATCGTATGGG 171821 32 100.0 35 ................................ ATGGCTAATCAGGACCAGTCCGAGGAACAGCTAGC 171888 32 100.0 34 ................................ TTGATCATTTCGATAGTGTTCATTGTCCTTCCTC 171954 32 100.0 33 ................................ TGTATTTTCATGAGCAAAACAAACTGGCGCGTC 172019 32 100.0 33 ................................ AAGAACCTGATGAGTGACGTTATCCAGGGCGCC 172084 32 96.9 33 ......T......................... TCACTTATCGGTTGATCCCTCTCGGGGCCGGGT 172149 32 93.8 34 ...........C.....T.............. AGCACGTTTGTTTTGCCGCTGGCGCCGTACGCCT 172215 32 93.8 34 ...........C.T.................. ACCAACGACTGCTACGCGCTGGCATTGTATACCT 172281 32 93.8 35 ...........C.T.................. ATCATGAAATGTGTCGCGAAAGTGTGCCTGAGAAC 172348 32 90.6 0 ...........C.T.................T | ========== ====== ====== ====== ================================ =================================== ================== 15 32 97.9 34 GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Left flank : CATATCGTTGAAAGGTTCTCGGAATGATGGTTTTGGTGACCTATGATGTTTCTTTGGCTGATGCTGATGGCCCGCGTCGACTCCGACAGCTAGCTAAAATGTGCTTAGATTATGGCGTGAGGGTGCAATATTCAGTTTTTGAATGCGAAATTGATTCTGTCCAGTGGGTGAATTTTCGAGCCAAACTCCTCAGCATTTATAATGCAGAGGTTGATAGTTTACGTTTCTATCGACTAGGGAAGGAATGGAGAAACAAAGTTGAACATCATGGCGCCAAGCCCGCAGTTGATATCTTCAAAGATCATTTGATCATCTGAATTCTCTTCCGCCAACCTGTAGTCCTCACCAAAAGGCTGGCAGGTTGGCGCGAAACTATTACTATGAAATAAAAGAGAAATTTCTCTAGTCTGTTGATTAGCGGTGTATCTGTGCCTGGTTAACTGTGGGTTGGCGCAAAATGCTTGCTAAAGGTAGACTACACAAGTCCTTGCAATAAGGGA # Right flank : TAATCGGGATGAGGGATTGCAGACGGTTGGCCCTGCCGTATTCCATGTAGATATGTGGGTTGAAATTGTGCTGCTTTGAGTAAATCTCATTAATCTTTATGGATTTCAAAATCCCAGGCTTTAAACGGCCTGGGGTTTTTTCGTTGCGCCGCGGACGGCCTGAAAGCAAAGCGGCCCCGACAGGGCCGCCTGTGTAGGTTCAGCGCGGGAACACCACCGTGCGGTTCTCATAGAGAAATACCCGCCGTTCCACGTGCCAGCTGACGGCGCGCGCCAGGGTTACGCGTTCGATATCTCGTCCTTTTTCAATCAGATCCTCCGGGTAGTCGGTATGGGTTACCGGCTCCACGCTCTGGGCGATGATCGGCCCTTCGTCCAGCTCCTCGTTGATATAGTGCGCGGTGGCGCCCACCAGTTTGACCCCTTTGGCCCAGGCCTGATGGTAGGGCTTGGCGCCCTTAAAGCCCGGCAGCAGCGAATGGTGAATATTGATCGCCTTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 128678-129133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZJ01000005.1 Serratia rubidaea NBRC 103169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128678 29 100.0 32 ............................. GTCGTACCCGGATTATCATCTGCAACAAAAAA 128739 29 100.0 32 ............................. GCCGTAACAATAGCCGGAGGACAACGAAATCT 128800 29 100.0 32 ............................. TCACCGGTACTCACATCTTAATCTAAGGACCA 128861 29 96.6 32 ............................A GCCAGCGCAGTATCGCCGCCATAATAGAAATC 128922 29 100.0 32 ............................. GGTGTATTTCAGGCCTGGCGCGCCTGCGAAGA 128983 29 100.0 32 ............................. CAGGTCCCTGTGATGGGTGAAGACGGTCTGCA 129044 29 100.0 32 ............................. GACATGATTACCGCTGCGTTTATCCAGCAGTA 129105 29 82.8 0 ..........T.T..A.......T....A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCATACTGCATTCCTTCCACCTGGGCCACCAAAGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGTTGCTGCTGCTTGGCGCGGTGTATACCGTGATCGGTATCGGAGTGGGGCTGGCGCATAACAGTGTGGCGCTGCGCAGTCTGTTCCGGAAACGGCGGGCGTAGTGTTGCGGGATAAAGCCTGTTCGGTAAGGTGCGGCAGAAGGTGAGTGATGATCTGCTTGGTACAGCGGCTATTCTGATGGCGAAGTGAAAATAAATTAATTGTTTTTCAATTGGTTATATTTTTCAGATTATCGTGAAAAGTCGGTGGCTTTTTTAAGTGGTAAAAAATCAATATAATTCAATTGGATATATTTAGT # Right flank : AGCAGTTACCGCACCAGTTCCAGCCCGGCGACGCGCCGCCAGTAACCGTTGCAGTCGCTGTCGTTGGTCAGCGCCAGCGGCTGCCCGGCATTTTCGTTGGCGCGGAACTGCTCGAGCATCGCCAGCGTTTCCATGCCCTGCGGCGACAGCCGCACGATATCGACCAGCTCCTGCATACCGCTTAGCTCATTACCCAGGTTGTAGCAGTAGCCGCTCATCGTCTGGATGCCGTTGAGCACGAATACCTGCTGGTTTTCCTGTGAGCGCATGGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCATCCTTGCCGCGGTTTTCCGAGCGTGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGGTGGCCGTAGCCCAGCACCTCTACCTCAAAGCCGCGGCGGAAGCCCAGCTCGGCGCACTGCTCCAGCACCTTGCCCAGCCAGTCGCGGGACAGTTCCACCGGCATGCACCAGCGCGTCATGCCCTGCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //