Array 1 782988-784173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010282.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 782988 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 783049 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 783110 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 783171 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 783232 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 783293 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 783354 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 783415 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 783476 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 783537 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 783598 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 783659 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 783720 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 783781 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 783842 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 783903 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 783964 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 784025 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 784086 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 784146 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 800843-802458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010282.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21538 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 800843 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 800904 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 800965 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 801026 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 801087 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 801148 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 801209 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 801270 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 801331 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 801392 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 801453 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 801514 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 801575 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 801636 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 801697 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 801758 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 801819 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 801880 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 801941 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 802002 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 802063 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 802124 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 802185 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 802246 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 802307 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 802368 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 802429 29 100.0 0 ............................. | A [802456] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //