Array 1 1522453-1518762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1522452 30 96.7 31 .............................T GGCTCAGGCCCCGGGCGTACTGCCAGGTGTG 1522391 30 96.7 31 .............................T ACGTCGTCGCTCTGCGCTTCGCGTCCGTGGA 1522330 30 96.7 31 .............................C CCCTACTCGCGCCCCCGGTTTCCTAGGCCAA 1522269 30 96.7 31 .............................C GGTCAGCCGCGACCGCATCGCGGTACTCGCC 1522208 30 100.0 31 .............................. CGTCGAGGACTGGCACAGATGGCTGGTCTGG 1522147 30 100.0 31 .............................. GCTGACCTCGCTGGAGTCAGCGGCCGTGGAG 1522086 30 96.7 31 .............................C GGTCGGTGTATGGGCCACCGGCTCACGATGC 1522025 30 96.7 31 .............................T TTCGTCGGCAAAGCGCTCAAAGCCTGCGGGA 1521964 30 96.7 31 .............................A ACTCGCCGGGCTCCGCGTCATGGTGCAGCAC 1521903 30 100.0 31 .............................. CTGGGCTGTTCTCGGCGTGGCCGGACTGGGC 1521842 30 96.7 31 .............................T TCAACCCCTGGCGGTGGGACCGGGACAACGG 1521781 30 100.0 31 .............................. AACCCCGCCATGAACCCCCCGACCCGTATCG 1521720 30 100.0 31 .............................. CCGAGGCCGCCGCGTTGGCCAGCTGTGCGCA 1521659 30 96.7 31 .............................T CGTCGACGGGCACGCAGTGGTATTCCGTGCC 1521598 30 100.0 31 .............................. GCATCGGGGTGGGCGCCCGCCCCATCGCCGT 1521537 30 96.7 31 .............................C TCTCTTCCCACCGCTCCGGCCAGTTCGCCGG 1521476 30 100.0 31 .............................. CGCTCGGCGGTGCGGGCTAACTCCCCGACCC 1521415 30 96.7 31 .............................A GCCGTCCGCCCTCCTCCACGACCTCCGTCGG 1521354 30 96.7 31 ............................C. GTCCCAGAGCCAGCGGGGCGCGTGCCCGGTC 1521293 30 96.7 31 .............................C GCTGGTACGGCTCCGGCCTGCGTCCCCGTCC 1521232 30 96.7 31 .............................T CGCGGCCGCCGGGGTCGACGTACCCGAGGCC 1521171 30 96.7 31 .............................T CGCGGCCGCCGGGGTCGACGTACCCGAGGCC 1521110 30 100.0 31 .............................. CGCCCCCGACACCCCAGATTCGCCAGAAAGG 1521049 30 96.7 31 .............................T CCGTCCCTACATTGGACCCCGGGGTGATCGA 1520988 30 100.0 31 .............................. CGGTCCAGGAGCCCGCGCTTCTTCCCGCCCG 1520927 30 100.0 31 .............................. AGATGGACATCAGCTTCGGGCGGGTGCGGCA 1520866 30 96.7 31 .............................C GTCTCCCAGACCGCCCGTGGCGGCCCTTACG 1520805 30 96.7 31 .............................C TAGCCCTAGTTAGCCCTCACGTCTAGCCCTA 1520744 30 100.0 31 .............................. CGGTCCAGGAGCCCGCGCTTCTTCCCGCCCG 1520683 30 100.0 31 .............................. AGATGGACATCAGCTTCGGGCGGGTGCGGCA 1520622 30 96.7 31 .............................C GTCTCCCAGACCGCCCGTGGCGGCCCTTACG 1520561 30 96.7 31 .............................C TAGCCCTAGTTAGCCCTCACGTCTAGCCCTA 1520500 30 100.0 31 .............................. CGGTCCAGGAGCCCGCGCTTCTTCCCGCCCG 1520439 30 100.0 31 .............................. AGATGGACATCAGCTTCGGGCGGGTGCGGCA 1520378 30 96.7 31 .............................C GTCTCCCAGACCGCCCGTGGCGGCCCTTACG 1520317 30 96.7 31 .............................C TAGCCCTAGTTAGCCCTCACGTCTAGCCCTA 1520256 30 100.0 31 .............................. CTCGGTACGGGACGCCGTAGTGCATGGCGGC 1520195 30 96.7 31 .............................T CCGGTGCGTTGGTGCTGAACTCGTCGAGGAA 1520134 30 100.0 31 .............................. CCCTCAGGGGCCTGGCACGACGCGGGTTGCT 1520073 30 96.7 31 .............................C TGGCGGTGTGGGCGTGCGTGAACCTGGTGGC 1520012 30 96.7 31 .............................C CGTTCTCCAGCAGGGCCTGCATGAACACGTT 1519951 30 100.0 32 .............................. AGCCCCAACCCCCCCCGTAGGGCAGGGGGGTT 1519889 30 96.7 31 .............................T CCCAAAGGTGCGGGTCTCCCGCAGGGCGGGC 1519828 30 96.7 31 .............................C GCGACCTGGTAGATCAGGCGGATCAGTACTC 1519767 30 96.7 31 .............................A TCAGGCCGAGCGTGTCGCCGACCATGGAAGC 1519706 30 96.7 31 .............................T CGCTGATCAGCCAGAGGAGTGCGGCCAGGGC 1519645 30 96.7 31 .............................C AGCATCACACGCTCCTGACCCGGGCTTTACG 1519584 30 96.7 31 .............................A ACGACGAGGGCCGGAAGCTGACGCCCAAGCA 1519523 30 100.0 31 .............................. CGAGGTACTCGCCGATGCTCATGCCGCTGAG 1519462 30 96.7 31 .............................C GAACCCCCGACCGTTGTATGGGGACCGTACA 1519401 30 100.0 31 .............................. GGCAGGGAGGGGACCTCGTCCCAGCGCAGCC 1519340 30 96.7 31 .............................A CGGCGTTACCGAGATCATCAGCATGAGTCAG 1519279 30 93.3 31 ............T................A CGCTCCAGTACCGGGCGATGCAGAAGTTGGG 1519218 30 96.7 31 .............................T CCCGGACGGGGGCGACGCAGGCATGAGCAAG 1519157 30 96.7 31 .............................C CGCGCAGGACGAGCACGAGGTGAACGGCACA 1519096 30 100.0 31 .............................. TCCACGCCCACCACGTGCTGCTGCGCGCCGC 1519035 30 96.7 31 .............................A TCTTGTCCGGCGGCAGCAGACGCCCGGTGTG 1518974 30 96.7 31 ................A............. TCCACGCCCACCACGTGCTGCTGCGCGCCGC 1518913 30 96.7 31 .............................A AGTACGCGTCCGTCATCCGGCAGATCGACGG 1518852 30 93.3 31 ............T................C GGCCGAGGATGGACTTGGCGCACCGCTGTGC 1518791 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 61 30 97.7 31 GTGCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : GCCCCGCATCGTCACTGACGTGCAGATACTCCTGGACCCCGAAGCCCAACTGGATATCCCAGACCCCGAAGAGCAACTCGTCGACCTCTGGGACCCCATCGCAGGAGCGATCCCCGGCGGCATCAACCACGGAGAGGGCCCATGACCGCCCGGCCGGAGGGACACAGCCCATGGCATCCATGATCGTGCTCTCCGCCACAGCCGTCCCCGACCACCTTCGCGGAGCCCTCTCCCGCTGGCTTCTGGAAGTCACCCCCGAGCTGTACATCGGTACGGTCTCGGCCCGCGTACGCGAGGAACTCTGGGCCTCCGTGACGGCGTGCGCAGACGACGGCACGGCTGTCCTGGCCTACCCGAGCGACAACGAACAGGGCTTCGAACTCCGCACCGCGGGGACGCAGCGCCGCCGCCCGGCGGACTTCGACGGGCTGACCTTGATCGCCTTCCGCCGAGAGAGTAAAGAAGATGCAAACCTCGTCTAACGGTCCAGGTCGGGAAGG # Right flank : AGGTTCCATGACCGCACAGCACGCGGACGGCGTGCTGTACCGCGGTGACGAGGCGGGCAAACCACCTGGGCGTCGGTGCCGGTTCGATCGATCCTTCGGTGAGATTTTCTCCAGGGAGAGTGGTCCAGCCGGTAGACCGGCATTTCTGTCCGAGCGCTGTTTGCGGAAAGTGGTCCCTGCAATTCGAGGCGGACTGCAAGGTCGCGGGGTGGGACGATCTGCCCGCCGTCGGGCGGGCTCCAGGAGGGAGCTGCTGGCGTCGATCAGGTTCCAGGTCGGAATGAATCCGGCGGTGCCCGAGCGGCGTGATTCTGGCATCAAGCGGCAGCCTGTCCGTGGAGATATTCCGACCCGGCTCAGCCTGGGGCTCTGAATTCGGGCGACGACGCACCCGGAAATGCCTTCATGTGTCACCGACGCATATGCCCACGTGAAGCAAGTCACAGCCGTTGTCCACACGTTGGACGCCCTCGGGTCGGACTGGTGGGGTCGCTGCCGTC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1532334-1534680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1532334 29 100.0 32 ............................. GCGAAGGGGCTGCTCCTGACGCTGCTCTCCTA 1532395 29 100.0 32 ............................. GGGCCACCGTCGTACCTGCCGGGGTCGGCGAC 1532456 29 96.6 32 ............................A CTTGGACAGGCACAGCACCTGGCCTGGGTGGA 1532517 29 100.0 32 ............................. GCGGTGACACGGGCCAGAGCACGCACGAACAC 1532578 29 100.0 32 ............................. CCACCTCACCCGGGTGCGCCCCACCAGATCGC 1532639 29 100.0 32 ............................. GCAGTCATGGATGCCGGATACGAAGAGGTCAA 1532700 29 100.0 32 ............................. TGCTCGCCGGGCGGGTGTCCGGCGCCGCACTG 1532761 29 100.0 32 ............................. GCCGCCAACCGGTTCGACCTCGCCGACCCCGA 1532822 29 100.0 32 ............................. GCCGCCGGATACCTCGCCAAGACCGTGCCCGA 1532883 29 100.0 32 ............................. GCACAGGGCTGATCGACTCCTCGTACGTACGG 1532944 29 96.6 32 ............................T GCCTCGCGGCCGCCCAGGCCATCCCTGGCGGA 1533005 29 100.0 32 ............................. GCAGATCGTCATCGGTGTGCGGTCAGCTGGAT 1533066 29 100.0 32 ............................. TAGCGCACCACCACGGCCCACCGGGGGTACAC 1533127 29 100.0 32 ............................. GTGGTCTCGATCTGGGGGCGGCCGTCCTCGTC 1533188 29 100.0 32 ............................. CAACTCGTGGTTCAGCGCCGCCTTGATGCGCT 1533249 29 100.0 32 ............................. ATGCTCCACGCCCGAAGTACCGAAACGCACGG 1533310 29 100.0 32 ............................. TTCACCGCCGAGGAGTTCGCCGACCGGCTGGA 1533371 29 100.0 32 ............................. GCCACCGCCCCGGTTCGGGTGGTGGCCTCTCA 1533432 29 100.0 32 ............................. TCGTCCAGGTCCACGACGACGACCAGCACGTC 1533493 29 100.0 32 ............................. GCTGCTCGCCGCCGCTTCCCCCGACCGTCAGG 1533554 29 100.0 32 ............................. CCGCCCGCCGTCGCCACGGCGTACATGACGGC 1533615 29 100.0 32 ............................. CGCAGGACCGTGTTCTGCGGGAGGAGTTCGCC 1533676 29 100.0 32 ............................. TGGCCTTCGCCAGCGGGCCCAGCTTCTTCAGA 1533737 29 100.0 32 ............................. CCGGGCGTGGAGATAGCGCCCCCGGCCACGTT 1533798 29 100.0 32 ............................. TACGGGCGCGTCCGGGCGGGCTGGTGCTCCTC 1533859 29 100.0 32 ............................. CACCTTGGCCCGGATCGTCGACCAGTTGGAGG 1533920 29 100.0 32 ............................. GTCATCGTGTTCCGTGTCTGATCCTGTGACAC 1533981 29 100.0 32 ............................. CCGTGTAGGACATGCGCCGCCCAGTCTTGGGG 1534042 29 100.0 32 ............................. CAAGGTTGATTCGGCACTGCTCAAGGCGATGC 1534103 29 100.0 32 ............................. GTGGAGGAGGGCCGGGGGATGAGGGAGCGGCT 1534164 29 96.6 32 ........G.................... ACGCGTGCCGCTTCGCCGCCGACCTTGCCCGT 1534225 29 100.0 32 ............................. CGGCGCGCACGACGCCGAGTTGCAGGCGTACA 1534286 29 100.0 32 ............................. CTCTACGAGCTGAGCCCGACCAGCTACGGCGC 1534347 29 100.0 32 ............................. GGGCCGACGGTTCACCCCGCGAGGGGTGACGG 1534408 29 100.0 32 ............................. TACCGGGGTCCGGCGGCGCACGGTCGTGCCGC 1534469 29 96.6 32 ........................A.... TTCCTTCTGGGGCTCGCCGTTGCTGGCGCGGC 1534530 29 93.1 32 ..............G.........A.... CGCGCTGGCCGTGCATGAGGATGCCCGTGCGG 1534591 29 93.1 32 ..........G.............A.... TCGAGGATGCTGTCCAGTGCGTCGGTGGCGTC 1534652 29 79.3 0 ..A............A......CAA.C.. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 98.8 32 GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : TCCACCCGCAGTCCGAGAGCCTCGGACACACGCTCGTGCACCTCGGCACCGAGCAGGACATCCCACAGGACCCCGAAAACAGCGGCAGTGTCCAGCAGATGACACACGACCGGATAGGGATGCGGGAGCTCCCGCTCCTTGCCCCAGAACCGGGCATCGAGCGGAACGCATCCGGGCGTTGCCTCTCCGTGATTCGTCATGAGGCAAGGAATAGCAGTCGCCACTGACAATGCGCTCCACTTACCGAAACATGCCAACACGGCGGTGAGGTAGTCGAGTTGGGATAGGACACGGGCCAGCGAATCACCTGTGAGGCGGCTCGACGGACAGCCGGAGTCTGCGGCGAAGCACAGCAGCACGAGATCCAGCGAACTGGCGCCGGACGCGTAGAGTCTCTCCACGTGACCCAGATACTCCTCCCCGTTCACCAGCAGCGGCGTCTGCTCAACCCAGATGACAAAGAAGCGGCAAAGGGTCTCTAGAGTCCCAGGTCGGGAAGG # Right flank : GGGGTGAGCCATCGCTCTGACCACCTACAACGCCGCATGAAGAAGCTCCACAAGCCGCATCTCGCACAGCCCCTGCTGACCTGCTTCGTGCACAACGCGAACTCCCGCAGCCACTTACGTCACGAACTCAGCACACTGAATGCGCCCCCCGCCACGATGGCACCAACGCCCCCTCCAGCGACGGTCTGAGCCAGCGTATGAGCGCTCAGGAACACGCGGGACCATGCGATCACCCCCACCAGCGGCACGGCCAGCCAGACCATGGGCCCGTACGCACACGCGAGGATCGCGAGCGAACCGGCCGCGACACTGGTGTGCACCGAGATCTTCCAGAACGCGGTGATCGGCAGAAGCACAGCGAGTGTGGTGAGCATCGCGACGACCAGGGCGAGCATCTGGCGTGGGGCACCGAGCCAGAGCATGGTGCCGATGCCGATGCTGACGGACGCCATGATGACGGGGATCAGGAGAAGGCGTCGTTGGCGGTTGCCGACGTGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1608266-1607749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1608265 29 100.0 32 ............................. GACGTCCTGGGCAGGCGCGCGGCCGCCGAACG 1608204 29 100.0 32 ............................. TCCTCGGCACCGCGTGTGCCGCACTGCGGGCA 1608143 29 100.0 32 ............................. GACGCGGACGCCCTGTTCATCGACGACCTGCT 1608082 29 100.0 32 ............................. GCGTACCGCACACGGATCCCGTCGGCCGCAGG 1608021 29 100.0 32 ............................. AAAGCCCTGGCCGAAGGCAAGACGTCCCCCGA 1607960 29 100.0 32 ............................. AGAAGAGGACGCCGCAATGAGCACCCCCGCCC 1607899 29 100.0 32 ............................. AACAAGGGCGGGGCGAAGAAGTCCACGCACGC 1607838 29 96.6 32 .........................C... TCCCGGTAGCCGCCCGCCTCCCACTGCGCCAT 1607777 29 86.2 0 ...........A.G.......G...T... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : AGGCGAAGGCCGGCGTTGCCTTCCCGATGTCATGCACCCCTGCCAGCCACACCACCAGTCGACGCGCATCCGCCAGGCCCTCTGGCAGCACCTCGGCAACAAGTCGCCGCACCGCTTCGGGCAACCATCGATCCCACAGCAGACCGGCCACCGCAGCGCTGTCGGCCATGTGTCGCCACAACGGCAGCCAGCCATCCGTCCCTGCGTCGTACTTCGCCCACACCTTGCGGGCAGGATCTGAAAGACCTTCGTTGATGCCGTGCGTCATCCGGCTCCGCCGCTCATCCACAACGACATCCAAGTGCAATCCCCGACGCCGATGGGCGGATTCTTCATCTTCCGCTGTCCCGGTTGCGACGATGCTCTCGAAGGGAGCCTCTAGTGGTGAAGTCTCGTCTGGCCAGACGAATGCCTCTCGTGCCGCTTCGTGTTACATGTCCAAATTGATGAATGTGCCGAAAACGACGAAGGGGACCGGGCATCTCTGCAGGTCAATCAGT # Right flank : GACGGCGTCCGCGTTCTGGGCCAGACCGGCAAGTGCTCCCCGTAGGCGGGGGCCCAGTAGGGCGCTGGCCGCCTCCGTCCAGTTCGTGCTCGCTGTACGCGCGGGGCCCCAACGCTATGCGGCCGACCCATGACAAACCGTTCGCAGCACAGGAAGCGACGACACGGCGCCCTGAGCGGTCACCGATATGTAGGCTCTGCAGCCTGCTCGTCGCGCGCCTCGACCACCAGAACGGTGTCGTTCTCCCACACCTCGGGCACATCGAGAGACAGCAGCATGCGGTAGCCGGCCCGCACCTCCTCCACCCACGCGCTGTCCTGCCCCGAGCCCTTGCTGCGGATGCGCTCCTGGTGTGAGTACAGGCCCGCCCTGTCCTCGCGCACGATCACGGGCGGCACGGAGCTCTTTCCAACCTCACGCTGACGCGTGGTGGTGGAGGGCGAGGATGGCCTTCACGATGTTGGTGATGCGGTTGGTGCTGCAGCGGAGCTCCCGCAGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1616849-1619741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1616849 29 96.6 32 ...........A................. GGTCACCAGGTGTCCTCGTTGAGGGTGGCGTG 1616910 29 100.0 32 ............................. CGAACTGGAGTGTGACCATGCCCGACCCGCGC 1616971 29 100.0 32 ............................. TCGCCAAGAGCGTTGCGAACGCGGCCGCCTCC 1617032 29 100.0 32 ............................. CAACTGCAGCACCTGTTCCGTGTGCACGACCC 1617093 29 93.1 32 T.......T.................... GGCGCGCACTACGCGGAGATCGTGCGGGCCAA 1617154 29 93.1 32 .....................A...A... GCCCTCTCCGTCTGGCACGACAAGACCGGCGG 1617215 29 100.0 32 ............................. GCATCACCCTCAACGAGGCCGCCGCGAACAAG 1617276 29 93.1 32 .............G.......C....... AGCGGGGACAGCCTCAGCGCCGCCCTGCCCGC 1617337 29 96.6 32 .................A........... CAGTCCGTGCGCGGCCTGCGGGACAACGCCCG 1617398 29 93.1 32 ...........A........A........ ACGGCGGGCGGCACCGTCGGGTCCCAGATGCG 1617459 29 96.6 32 ............T................ GGTCGAGGAAGAGCCGAACTCAACCTCGATGT 1617520 29 96.6 32 ........................C.... GCCCTTACCCTCCAGGCAACCCGCTGGTGGGT 1617581 29 96.6 32 ..............T.............. GGCGGGGTGGTGTATGTCCACGCGTGGGTACG 1617642 29 93.1 32 .....................A...C... CATTCCCACCAGGTGGTGCCGGGGGTGAGGAG 1617703 29 100.0 32 ............................. ACGGCGCTGATGACGGCGACGATGGCCGCTGC 1617764 29 100.0 32 ............................. ACCACCGGCCGCCGCTGCTCCGGCACCAGCCC 1617825 29 96.6 32 ..............T.............. CAGAACTGCTCGGTCTCGCCGTCCTCGTAGAT 1617886 28 93.1 33 .....................G.-..... CAAGACCTCCGCGTCCGGCCCCGGAGGGTTCGG 1617947 29 86.2 33 ...T.......A.........A...A... GAATGCCGCCGGTGCGGAGCCGAGGCGGAGGAG 1618009 29 96.6 32 .................A........... TGATCGAGGGCGGCGTGCCACTCGGCGAGCTA 1618070 29 96.6 32 ..............T.............. TTGCAGGTGGGATCGTGGATATCACTCAGAGT 1618131 29 93.1 32 ........T...T................ AAGCCCCTCGCGCAGGGCCTGCTGACGGGCAA 1618192 29 89.7 32 .................A...A...A... ACGGTGCGCACGCGCGGCGGAGACCTCGTCGA 1618253 29 93.1 32 .....................A...A... TTCGGCATCTGGATCTGTCCCGCCTCGATCTG 1618314 29 100.0 32 ............................. CGCCACAGGTCCTCGTCTTCGATCCCGGTGTC 1618375 29 96.6 32 ..................A.......... CCGCCCTCCGAGGGCGGCCGCGGATTCCGGCT 1618436 29 93.1 32 .....................A...A... TGTCGTGACGAGTGAGACGCTGGGGAACCACC 1618497 29 93.1 32 .....................A...A... GAGGAAGAGCGCCGGTCCTTCTCAGAGATCGA 1618558 29 89.7 32 ..............T......A...A... TGCTGGATCCGCACGCGCGTGGTGCCCGGGGT 1618619 29 100.0 32 ............................. GCCTCCAAGTCGAGGCGTTCCTCCAGGGATTC 1618680 29 96.6 32 .................A........... GCGAGCGCCAACTCGTCCTCCGCGTACGGCCC 1618741 29 93.1 32 .....................A...A... TTACGCGGCGGTGACGTACTGCTGGGGCCGCT 1618802 29 89.7 32 ..................A..A...A... TTCGGCATCTGAATCTGTCCCGCCTCGATCTG C [1618807] 1618864 29 100.0 32 ............................. GCCTCCAAGTCGAGGCGTTCCTCCAGGGATTC 1618925 29 96.6 32 .................A........... GCGAGCGCCAACTCGTCCTCCGCGTACGGCCC 1618986 28 89.7 32 .................-...A...A... TTACGCGGCGGTGACGTACTGCTGGGGCCGCT 1619046 29 89.7 32 ..................A..A...A... TTCGGCATCTGAATCTGTCCCGCCTCGATCTG C [1619051] 1619108 29 100.0 32 ............................. TCGTCCCAGCCCACCGCCGCGTTGCGGCGCGC 1619169 29 89.7 28 ........T.......AA........... CGTCGGCGCTGGCTTCGGACGGGGTGGG 1619226 29 89.7 32 ......T..........A...C....... CAGACCTGGCCTGCGCGATCCTCGTAGGAGGA 1619287 28 86.2 32 .....-.....A....T........C... CGGCCGAGCACGGTGCCCGTGCCGCGTGCGGT 1619347 29 89.7 32 ...T.................A..T.... AAGACCTCCGCGTCCGGCCCCGGAGGGTTCGG 1619408 29 86.2 32 ...T.......A.........A..T.... AGCGGGCCGATGCCGCCCGCGCCGGTGTCCTC 1619469 29 100.0 32 ............................. CGCCCTTCACTGTGCACCCCGCAGGGCCGGGG 1619530 29 96.6 33 ......................C...... CCGGTTGAGGGAGCCGGTCTCACGACCGGCTTA 1619592 29 89.7 32 .................A...A...C... GGGATGAGCTTGACGCGTCGCCACAGGCCATC 1619653 28 79.3 32 ............-.A.....CA..AA... ACGATCGCGTGGATGTGCGGTTGCCAGCCTGA 1619713 29 72.4 0 ......T...TATT.......A.....TA | ========== ====== ====== ====== ============================= ================================= ================== 48 29 93.8 32 CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Left flank : GAGTAGCCCGGTGAACACCCCCGGCCAGCGCCCGGCCAGCGGTCCGCGCGACCTCACCCGCATCGCCGACCGAGCTTCCTTCGTCTACCTGGAACGCTGCACCATCCACCGCGACGCCAACGCCATCACCGCCAAGGACGCGGACGGCACCACCCACATCCCCTCCGCGACCATCGGCACACTCCTCCTCGGCCCCGGCACCCGCATCACCCACCAGGCAATGAGCGTGCTCGGCGAGAGCGGCGCGGGCGTGGTGTGGGTCGGTGAACAGGGCGTGCGCTACTACGCCTCCGGGCGGGCCCTGACCAGCTCCTCCCACCTCACCGAGGCTCAAGCGGCACGCTGGGCCAACCGCCGCAGCCGCCTGGACGTGGCCCGCGCCATGCACCGACTGCGCTTCCCCGACGACTAACGGAGTCCCATTTTGGGTGACTACGCCTGTTTCGGTGAAAGCGTTGAGCCTTCAGACTCCGCTACGACAAACATGCAGGCCACCGAGC # Right flank : ACCTGGCCTGACGGATCAGCGGTGGCCCCGTTTAGGAGCGGGTTTTGGCCCCACTTGGGCGTCGGAAAGGCGTTGATCACCAGTGAGTTTTGGCCCCACCTGGCGGTAGCTGTGAGGTGCCTGGAAGCGGATCTGACTGGCATGGCGGGAGTGTGACAGTGCATCGTGCGGTGGTGAATGAATCTGCCTTCGCCGAGCATGAGGACCGTTGGATCTTGGGCCTTCGGGGCCTGGAGGTCACCAAGATCAGCGTCGACTATCAGCTGTCGCTTCAGCTGGGGTCGGATGCCTGGGTTGTTCTGGAAGGCCCGTGCCAGCTGTCTCAGGGCTCTGCTGGCGGGGGCAGTCCGCAACAAATGATGGATCCGGGGCAGCAGGATGCGGCGGCGGCGCTGGCCTTGTTCGGAGCCAAGATCTTGTCGGCTGTGGCTTTCAAGACAGGAACCTTGCGGCTGGTCTTCGACAACGGGCTGCATCTGGTCTGCGTGGCCGATCCGGCG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [15-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 9370331-9368163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 9370330 29 82.8 32 G..........G..T.........GA... GACGAGGCAGCCATGCAGGTCATCCACATGCC CCCG [9370318] 9370265 29 72.4 32 ...T.....A.GTA......A...GC... GAGGTCATGCAGTTGTTGAAGAATCCGCTGCG 9370204 29 86.2 32 ........T..GT...........T.... TGGCTGAGTGATCCGAAGAACTGGGTACGTGT 9370143 29 93.1 32 ....................A...T.... TACAGCAAGCACCCGCCCGCCCTCTTGTTCGC 9370082 28 89.7 30 G...-...................T.... GGGCCGGGTCCGGCTTGCGGATGCCGACCG 9370023 29 79.3 32 AGT........G..T.........T.... GCCTACAGCCGCCACCTGGTCAAGGCCGGAGT A [9370002] 9369961 29 75.9 32 GC.........G.T...A......T.T.. TCAGTCGCCGGTGCCATTGAGGGCGAGTACCG 9369900 29 79.3 32 ....C.G..A.G.......A....T.... ACCTCGGCCATGTAGAGCGCCGTACGGCGCTG 9369839 29 69.0 32 GCA........G..G.TA..C...T.... GACGGCGACCGTCCCGTCATGACCACGGGCCT 9369778 29 82.8 32 G.........AG...T........T.... GCACGATTCGGCGCGGGTACTGTCATGCCTGC 9369717 28 89.7 32 G...............-.......T.... GGACGAGCGCGTGCTCTGGCCCGGCTCGGTGA 9369657 29 82.8 32 G...........T....A......T...A GCCGTCTGCCGGGCCGGCGGCCCCGGACCGTC 9369596 29 86.2 93 G................A......GA... TGTGCTGATCTGTGCCGCGAACTCCCGCTCGGCCTGCTCCCCCCCTGCGGGGATGTTCCCGGGATCGTCGCCAGCTGTCCAGTTCGTCGGCCG 9369474 29 86.2 32 ...........G..T......T..T.... GCTGCGGCCGGAGAGGTCACTAGGCTCGTGCT 9369413 29 89.7 32 ..............G..A......T.... GCCCGGCCGACGCGGGTGCGGCCCTTCTCGTC 9369352 29 82.8 33 ...T.......C.A..G.......T.... TACAAGCAAGGCGTGTTGGTGTGGGAGGACAGT C [9369332] 9369289 27 75.9 32 ..............TA.--T....TC... AAGGGGGACGAGTCGATCTACAACGAGGTCAT 9369230 29 82.8 32 G.......GC...T..........T.... AAACTCAACGACGTCTACCGGCCGTACACGCA 9369169 29 75.9 30 T.A..........T...A.....ATC... CAGCTCGGCCTTCGTCATGATGAGCGTCGA 9369108 28 75.9 32 ............T.T-.C......TCT.. GACGGCAAGGCGCACAACCGCTGTGTCGTCGG 9369048 29 86.2 32 ...T..........T.T........C... CGGGGCGCCAGCTGCTTCGTGGGCCACACTGT 9368987 29 82.8 32 G.......T..G............GA... ATCAAAACCACCCGCCGCTCTTCGTCTTCTTC 9368926 29 86.2 32 ...........G..T.......C.A.... ACGGGCAGGGGCAGGGGATGCTTCGGCTCGAG GG [9368902] 9368863 29 93.1 32 .........A..............T.... GCCAAGGAGTCCAAGCTCAAGATCATGGCGTC 9368802 29 89.7 32 .....T........T.............T GCGGCGGCGATCCGGGCACTTGAGTCGGTGAG 9368741 29 82.8 32 ...............T.A....C.T..T. TTCCGCGCGCTCGATGCCGTCTTCCAGTCGAG 9368680 29 86.2 32 ...........G..T.........TC... GTATCGCCCTCGATCTCCCAATCAATCTCCGG 9368619 29 89.7 32 ..............T.....A...T.... AAGGCCGACACCGTCGCCATCCCCTCTCGGCC 9368558 29 86.2 32 ............T..........AT.T.. GACCCTGCCGTACTCGGCACACGCGTCTGTGC 9368497 29 82.8 32 G..........G..T..A......T.... TCGGCGGACATCGTGTGGACCGGCACGCCTGC 9368436 28 96.6 32 .................-........... TCCAGAGCGAGCGAGAGGCCGAAGCCCCAGCC 9368376 29 86.2 32 .......T...C...T........T.... GGTTCCTCGCACAGTGGGCTGGTCTCGGGGAG G [9368363] 9368314 29 89.7 33 .C......................T..A. GAGCTGGGCAGCCCCCCCTGTTCAGTTCGAGCT 9368252 29 86.2 32 .........C.G..T.........T.... GTCCACTGAACGACGGTGACGCAGGCCTGGCC 9368191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 35 29 84.7 34 CTGCTCCCCGCACCCGCGGGGATGCTCCC # Left flank : CTCGACCAGCGCCGTCTGCTGGAGAAACGACTCGACGAGCTGCTGGAGACACACCCTCTTTCCCAGGTCCTGACGTCGATGCCCGGCGTCGGCGTCAGGACCGCGGCCCGCCTCCTCATCGACGTCGGCGACGGCACCAGGTTCCCCTCAGCCGCCCACCTCGCCGCCTATGCGGGACTCGCGCCGACGACCCGCAGCTCGGGCTCCTCGATCCGCGGCGAACAGCAGTCCAGGAGAGGGAACAAGCAGCTCAAGCGGGCTTTCTTCCTCTCCGCGTTCGCCGCCCTGTCCGATCCCGCCTCCCGCACCTACTACGACAAGAAGATCAAGGAAGGCAAGCATCACACCCAGGCCCTCCTCTGCCTCGCCCGACGCCGAGCCGACGTGCTCTTCGCGATGCTCCGCGACGGGACCTTCTACCAACCACCAACCCCCGTTGCCCCTTGACCGAAGTCATAGAGGCACCCCCCCGGATCGTAGGCTCGCAGCGTCGGCCGCTG # Right flank : GATGACCGACGCCTACGAGCGGCCGCACTGCCGCAACACCTGAGACGAGAACACTGATGACCACCCTTCACCCCGAGCGCGGCTTCATCGTGTCAGCCTCCTTCATGAACACAGTCCCCGCCGCCCCCCCCATTACCGTTCTCGTAGTCCCGCAACGGGACTACCGGCCTTCGGAGTTGGCATGACTACCTCCCCTTGTCGAGTGCATGGCCCGGGGGGTGGTGTCACCGGCTCCGAAGGCACTGACAGACCGCTGATTAGAGGCATGACCACCGGCCTTTCCCCAGGTCGGGAGGCTCTTCGTAATGTGGATGTGGCGATCAGTGCCGTGGCGAGGCCGGGTGAACAGCACCGAAGGAACCACGACGTGATCGACATCAGCGACATCGACGTCTTCCTCGGCCTGGACGTCGGCAAGGGCGAACACCACGCCACCGCTGTCACATCGGCCGGGAAGAAGGCCCTCGACAAACGCCTGCCCAACAGCGAACCCAAGCTCC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:-0.13, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [38-63] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 9373785-9371827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 9373784 28 75.9 86 .C......G.........C.AG..G-... AATGCCCCGACCGAAACCTCGAACAACGGCAGGAACTCCCTACGTCGGGAACATCTCCTTGAATGCAGTGCGACGCAGATCGGCTC 9373670 29 75.9 32 C...AG.......AT..CA.......... GAACTTCGTTACAAAGCTGCCCTGTTGTTCCG T,T [9373658,9373663] 9373607 29 75.9 93 C.A..........A.C.AC.....C.... GACGCGGCGGCTAGGATCCAGCACGTGGCGGGCCGTTCCCCGCGCACACCGAGACAGTGTCTTCGACCGGCTCGTCCTGGCCGACGTGAACAT C [9373598] 9373484 29 86.2 32 C.A........G..T.............. GGCTGCCGGGCGTGCGGATCCCGATACAGAAC 9373423 29 89.7 32 .C............T..........A... TACGGCTGCTTCGGCACCCCCCTCACGGCACT 9373362 29 96.6 32 ...............A............. ATCTCGTGTGCCATGACCACGGACTTCACCCT 9373301 28 86.2 32 C...-.........T..........A... AACGTCGTCCCGCTGCCGCGCCTCGGTGCTAG 9373241 29 89.7 32 .C.........G..T.............. GCGCACCGCGTGGCGATCCTGGAGCACGGCAA 9373180 29 86.2 32 C...............A..TA........ GCGAAGGTGCCGACGAGCAGCCCCAGCGCGTG 9373119 29 93.1 32 C..........G................. ATCGGTTTCACTCCCCCGGAACCGTCCAGCGC 9373058 29 96.6 32 ..............T.............. CGTCCCTCGCCGTTCGGGCCGTTGGCCTCATA 9372997 29 89.7 32 .......A..........A.....G.... GCCGCGCAGGACAGGAGGCGTTCGGGCATGGC 9372936 29 100.0 32 ............................. GGGCATATCTGGGTGGGCACAGTCGAGATCAC 9372875 29 93.1 32 ..A...........A.............. GCGTCGAGCTGGGCGGCCGGGGCCTGTTCTAT 9372814 29 89.7 32 .C...T......................T TACGCGTTCGACCACACCGACGAGATGGCTGA 9372753 29 86.2 32 C.........AG...T............. ATCAGATGGCATGGTCTCGCCTCTCTCTGAAC G [9372732] 9372691 29 86.2 32 C........T....T......G....... ATCGGTGCCGCAACGGGTCCGGCCCGTCTGAT 9372630 29 100.0 34 ............................. GGCGGAACGATCACGGAACTGGACATGATTCTGT 9372567 29 89.7 76 ..........TG..T.............. GACATCACCCGCGCCGAGTACGCGCTCCGCCTGTGCTCGTTCCCCCTGCCTGCGAGATCCCCGAGCCGGACCCGCC 9372462 29 89.7 32 ...............A........GG... CACACCCTGATCGCTGGCGCGACGGACAACGG 9372401 29 89.7 32 T........A........A.......... TCCGCCTACCTGACGTGCAACATGGTCGTGGA 9372340 29 89.7 32 .CA.....................A.... GTCCAGACCCGGTACGCACCGCTACACCAGGC 9372279 29 96.6 32 C............................ GACATCGGCCTGTTGGGCAACACCACCCAGCT 9372218 29 96.6 32 ...........G................. TCCGCGTAGTCCGTGGTCCCGTCGGATCGGTG 9372157 28 93.1 32 ........A-................... ACCTGCTCGGGGTAAGGCGAGAGCAAGGCCTC 9372097 29 96.6 32 ..............T.............. CGCTACTGCAATGCCGAACGCCGCCGATTCGC 9372036 29 93.1 32 ..A...............A.......... GTGACCTACCACCTGTCCGAGCAGGCTCACAT 9371975 29 93.1 32 ...........G....T............ GCCACCGGCGTCCCCAGCGGCGTGCACCACCC 9371914 28 96.6 32 .........................-... AGCTTCACGTACTCCTTGGGTTCCTTGTCCGA 9371854 28 93.1 0 ....................-....C... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 30 29 90.5 38 GTGCTCCCCGCACCCGCGGGGATGTTCCC # Left flank : CAAACTCGGCTTCCTCCTCACTCAATGGCACAGCAGCATCGAACGGGTCGTCCCCAGCCCCCAGCCGATCGGCACCACGGGCCAGCAGCGAGGACCAGTGAGGCACGTCCAAAACAGGCCCGCAGTCATGCAGTTCCCCCACACCGTCGAGACCGCGATGGATCGCCTTGCGCCATTCCCCAGTCAGCCGCGACTGCGACATCTTGGCCTGCCAAATCCCGTGAATCCCCACAATGTGCACCATGTGCGCATCGCCCCCGGCTATCGCCCCACCATGTCAGACAACGAGACTAATGCGAGCCCACGCCACGACGGCGAACTCTGCCGTTTTGCTCCTCCAGCCCTCAGGCCACTACGCCTCCGGCAGTCTGTCGTCACCAGGACTGGACCACGTAACCATCGCCGTAGGTGCAGGGAACACTGCGGTTCCAGTCCACGGCCCGTCCCGCAAGCGCAGGGAGGGTCCCCTCACCGACGGCCAGCAGCCCTCAAGGTTCTGC # Right flank : CCCCATTACCGTTCTCGTAGTCCCGCAACGGGACTACCGGCCTTCGGAGTTGGCATGACTACCTCCCCTTGTCGAGTGCATGGCCCGGGGGGTGGTGTCACCGGCTCCGAAGGCACTGACAGACCGCTGATTAGAGGCATGACCACCGGCCTTTCCCCAGGTCGGGAGGCTCTTCGTAATGTGGATGTGGCGATCAGTGCCGTGGCGAGGCCGGGTGAACAGCACCGAAGGAACCACGACGTGATCGACATCAGCGACATCGACGTCTTCCTCGGCCTGGACGTCGGCAAGGGCGAACACCACGCCACCGCTGTCACATCGGCCGGGAAGAAGGCCCTCGACAAACGCCTGCCCAACAGCGAACCCAAGCTCCGCGAGGTCTTCACGAAACTCCAGGCCAAGCACGGCATCGTGCTTGTGGTCGTCGACCAGCCGGCCTCCATCGGAGCCCTGCCGCTGGCCGTTGCCCGAGCCGTCGGCTGCCAGGTCGCCTATCTGCC # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 9385785-9389191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023699.1 Streptomyces kanamyceticus strain ATCC 12853 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================================== ================== 9385785 29 69.0 29 .G.T.......GTAT..........G.AA CCGGCTCCGCGGTTCTCGGAAGGGATCGG 9385843 29 82.8 32 ........G..G.A...A.T......... GAGCTGGCCGACGAGGTCCTGAAGTCGGGCCG 9385904 29 86.2 32 .......T..TG....T............ GAGGCCGACCTGGACCGTGCGCTCTTCGGCCC 9385965 29 86.2 32 T.....................C.TT... TAGCCCTCCTCCATCTTGAGCTGCTCCAGGCG 9386026 28 82.8 32 ..........T.T...-.......TT... GCTTGCGGGAAGCGGATGCCGCTGCGCCGCGT 9386086 29 89.7 37 ........AA......T............ GCGCTCGCCGTCGACACCGTCCCGAAGCTTCGCTGCT 9386152 29 86.2 32 .CC.C...........T............ GTTCTGAAGTGGAGCGGCGGCAACCCGACCAA 9386213 29 89.7 32 ......T....G.T............... ACGACGGGAGCCGCAGCGGGCGGCATCGGAGC 9386274 29 93.1 32 .........................CT.. TGCACCGGGATGTGCAGGAGGAACCCGAAGGC 9386335 29 89.7 32 ..........T.....G........C... AAGGGGGTGGGACTGCTGCTCCAGGCGCTCAT GG [9386350] 9386398 28 86.2 33 ...........GTA.........-..... CCCGCTCGCTGACGCGGTGTTTCGTGCGAAACG 9386459 28 86.2 32 ...........G.A...A.....-..... CACAACGCGAAGCTCGCCCAAATCCGGATGCG 9386519 29 100.0 32 ............................. GACGAGGCGGCCATGCAGGTCATTCACATGCC 9386580 28 86.2 32 ...........G.A......C..-..... GAGAAGGAGACCCACCATGACCGAGATCCAGC G [9386607] 9386641 29 79.3 32 ..........T.TG.......GAT..... CATCTGCCGCCAGGTGATCGACTGGACGTCCC T [9386650] 9386704 28 75.9 33 ...T..T....G.AT..A.....-..... CGCCACCGTCGTGGCCCGCGCCGCGCGACCGAA 9386765 29 93.1 32 ..............T...........T.. AAGACGACGATCTCTGATGTAAAGAACGGTGA 9386826 29 82.8 32 ...........G.A.......G..AC... GAGACCACCGCGACGAGGGCGGTGAGCGCGCA C [9386835] 9386888 28 93.1 33 .............T.........-..... CAACGGTGTCGGCGTGAAGATCCTGCGCCGGGT 9386949 28 86.2 24 .............AA........-....T CGCAACATCGAGTTCGGCGCGCAC T [9386953] Deletion [9387001] 9387002 29 86.2 32 ..AT.......G.A............... CCGAACTTCCACCACTTCGCCATGGGTCGGGC 9387063 28 82.8 32 .....T.....G..-..........C..T GTCACCGGCAGCTCGACGACGCCATGCGCGCA 9387123 29 93.1 32 ........T........A........... GCGGTCCCGCCCCGGCTCGCTGCCCACCTGCT 9387184 29 75.9 32 .........ATG....G.A.....TT... GGGCGCCGCTGTCAGGAGCTCGCCGACGCTGA 9387245 28 93.1 31 ...........-..T.............. TGGTGTGCCACCGTGCCGGATGCGACCGTTG 9387305 29 89.7 32 .........A....T..A........... TCGATGCACGCGGACCCGCGCACCGTGCACAA 9387366 29 93.1 32 ...........G................T GACAACATGCGTCCGGTCAAGCCGGACCGCGA T [9387371] 9387428 29 89.7 31 ........T..G.............G... GAGGTTCAGCTCGTCCTCGGCTATCAGGGAA 9387488 29 75.9 32 .....T...AGG.G..G.........T.. GGCGGAGCCTGGCCCCATCCGTACACCGGCAT 9387549 28 86.2 33 .............A........CA.-... GCATTCGGATCTGTGTGCGAGTTGCCCTCTGCG G [9387566] 9387611 29 82.8 32 ...........G...A........TT.T. GGCTCGGGGAGCTGGTGAAGAAGTCGTACCGG 9387672 29 82.8 31 ......T....G.A...A..........T CCCATCGGGGCGTGGCTGGTTGATGGGGCGA 9387732 29 75.9 32 ......T..A.G.AT..A.......C... GCCCAGGCAGTCTCCACAGACCGGCCCACGGT 9387793 29 93.1 32 ...........G..............T.. GCCGTCGCCGGGTACGCAATCGGCAGCGCGTC 9387854 29 89.7 32 ...........G.A.....A......... GACCTGGCCAAGGTCGCCAGGGAACTGCTGCT 9387915 29 96.6 32 ..............T.............. TCCAGGCTGTCCGTGGAGAACGCCTCGCCGAC 9387976 29 93.1 31 .........................T..T TCTCGCGCACTCACGACGAGACCCGGTTGCC 9388036 29 89.7 32 ............TA...........C... GACGACAAGCTCTGGAACAACCTGGTGTCCAA 9388097 28 89.7 57 ........-..G.A............... GACCTTGAGGACGTGGACGGCCCGGCGCTGGCCTGCTCCCCGCGCCCGGGAGCGCAA 9388182 29 82.8 32 ..........TGTA...........C... AAGACCGGGGAGGACTTTGCCGGGGGCCGCAA 9388243 29 93.1 32 ..A........G................. GGCACACGAGCACGACGGGATGCGGGGCCGGG 9388304 28 93.1 223 ...........G.....-........... GCGGTGCCGTCGAGGTAGGCGGTCACCGTGCGCCGCTCCCCGCGGGTGCGGGGAGCACAAGGGCGAGGCGTTTTCCATGGACAGTCTGGAGGGGGCATCCCCGCAGTTACGGGGAGTCAGGTGCGAAAGTCGCCGTCTCGGATGTCGGTTCGAGGGAGGGGGCGGCAGAGGGTGCACGAGCCTCCGGAACATGAGTCGTTGGATCCACTCGATACGCTGCACT 9388555 29 96.6 32 ...........G................. CGGAAGGTCTGGGTGAGCGTGGCGGTCGCGTC 9388616 29 100.0 32 ............................. ACCATGCTCGCCGACGAACTCGCCCGATGCCG 9388677 29 93.1 32 ..........T...............T.. ATTGAGGAGAACGTCACCCCCGTTGAGTACCT 9388738 29 69.0 32 AC....T....G.AT....A......T.A CAGGCAATGAAGTGCTCTCGCTCTGGAGTTGG 9388799 29 86.2 32 ...........G......T.....AT... GAGCTCGACCTCTCGGTACGCCGCACCCGGGG 9388860 29 86.2 32 T.......G..G.A............... CACGGACACAAGCTGTACGACGTGATCCGTGC 9388921 29 79.3 32 A.........TG.....A......TT... AACGACGACACCGAGGGCTTCTCCACGACCCG 9388982 29 89.7 32 ...........G............TT... GAGGTCAACTGGTGGGACGAGCGGACCGACAA 9389043 29 86.2 32 ...T..........T.........TT... TGTTCCAACGGCTGCTGAAGAACTCCCGCAAG G [9389060] 9389105 29 82.8 29 .C.........G...T.A...G....... GACCTCGCCCGCACCCTTGCTACGTGGGT 9389163 29 75.9 0 .G...G.......A.A..........GAA | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================================== ================== 53 29 86.7 36 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CAAGAAGTGGTTCGCCCGCCGTCTCCAACCCGAAAGCCAGTCACGCACCGCCCCTGATGGCGTCGTTCGCATCGGTGCCACCGCAGACCCAGCAAACCTGAACATCCGTATGCTCCCCACGGTGAGCAGCCCTGGCCCTCACCAAGGCCTGCGAATCGCCCGTGCGGAGATCCGCGGCGTGCTCACAGTCACCGACCCCGCAGCCCTAGTCGACGCGATGACTCGGGGTATCGGCCATGCTCGTGCGTACGGCTGCGGCCTCCTACTGACTCGATGAGGGCAGCGACACACGAGCTAGCTCAGGTACGCTCTCCGCTTCCTTCAGCGGAGAGCGTCTGTGCCCTGGCGCACGGAGGTTTTGGGTGACGGTGTCGAGACAGCAGTTCGGGCTGTCCAATACGGGTGAGCATGTTCCCAACACAAAGTCGATGACGTTGAGCGGACTGTCCTGCTGCCTGAACGCGTGGGATGGGTAACAAGCCGTTGGAGAACAACATCGA # Right flank : AGTCGTCATCGCCTGGGCCGCGTACACAGGTGCATGGTGAGCAGAAGGTCATGATGCGCGGCAGGTGACTTCAGGATTCTCGAAGGTTCGTCGTCGCAACCGGTACGCCGCATCACACTGGCGGCCCCGCAAGTGCCTGCAGTTCATAGTCTCCACTGGCCGTCATTTCGGCTGCCTCCGACAGCGCCCCGGAGGAGAGGGATCCGCTGCCGTCGGTCATTAGCATGGCTCGCTACCGAAGGAGCGGACCGAAGCCGAGATCCGCCGCTTGGTCGTGTACGGGCGGGAGTTCACCGGCCCCGTCCCTGCAAGCTCGTCGGCCTCGCCGCGGTCTTCGGCACGTCCGTCCCTGGGGCCGCCGGGCCGCCTATGGGCGCCAAGAGGGCGCCGACGTTGAGCAGGCCACCGGTGATGCTCCACCAATGAGGACGCGCGCAGCGGCCCTGTCCGAGCGTGCGAGCTCGGATATCAGCTGCGGACGACGCCGTCGGAGTCTGGGA # Questionable array : NO Score: 4.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.34, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [86-72] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //