Array 1 1312-324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000164.1 Cylindrospermopsis raciborskii C07 NODE_257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1311 36 100.0 38 .................................... CTGGGATAAAGTTATACCAAAAAAATATTCTAAAAGAT 1237 36 100.0 36 .................................... AGAGATTGGCAGTGGACATGAATCCTTGCCTTTATT 1165 36 100.0 38 .................................... AAAATGATTTACCTCTTCGGTGCACTGGTCTAGGAGAA 1091 36 100.0 39 .................................... ATGGACAGCCTGTAATCTCCTTCTTCCGTCAAGATTTTA 1016 36 100.0 36 .................................... TTGCCTTTATTAAATGTGTCAGGAGCATCCATAGAG 944 36 100.0 37 .................................... TCAAGGGGAGCTAGCCCCGATAATAAACGTATTGCTT 871 36 100.0 38 .................................... TGAAAACATCGTTGTGTCATGTCGACACAGGGTCGACA 797 36 100.0 39 .................................... TTTTTCTGGACAACAGAAAGTGTCTTTCGGAAAGTTTAT 722 36 100.0 36 .................................... TCATAATAGGATAATGACTCACGGTAGAGTCTTACT 650 36 100.0 37 .................................... AGTTCGTATGCAGCGTTTATCTGCTGCATCACTTGGG 577 36 100.0 36 .................................... TAAAAGACCTCCATGCCCAGGGCATGAGGCAGATAG 505 36 100.0 35 .................................... ATCAACTACTTCCTTGATCTTGTCTAACAATATGA 434 36 100.0 39 .................................... CTTGACAATAAATATTAGCGGTGTTACCCTAATAATGCC 359 36 83.3 0 .........C......T........A.....T.C.A | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.8 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGGTTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAGGGATAATGATAAAAATAAAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ACTAAATAATGAGTGCTTGAGAAAATATCGAACTTATTAGCTGTGCAACATGAAAAAACTACAAAATCTTCTTTTCTCCTTCCTCATCTTCACTTTAGTATTTTTAGGAATTACAGCTTTTTTTATTCCTAACATTGCTTATGCACAAACCCAGAAGTGTTGAATGTTAAGAAAGTTGTGATAAAAATTGCCCAAAATATATTAAAATTTGGGCAACCCATATCAAAATATTAATTTGATAATGATCATAAATTCATTCCCCAAGATTGTCAAGGACATCCTCAGACCGTTACCAAAAAATGATTATCCAGTTTTGAACAGCCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1413-5028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000165.1 Cylindrospermopsis raciborskii C07 NODE_258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1413 36 100.0 35 .................................... TTTCTGGAGTCCACGGAAACTTATTTCCGTGAAAA 1484 36 100.0 35 .................................... CAACTGGCAAGTAAAGAGAAGAGTTGCCCGTTTAA 1555 36 100.0 38 .................................... GAGGAACTCCATTACCCAGAATCGGAGGGGTGGATAGT 1629 36 100.0 37 .................................... CAATTCAACCAAATCTATGTTGGGGACATTGACAACA 1702 36 100.0 40 .................................... AAAGCTCCCATAAGTTTGACTCACGGGAGCATCAAAATAA 1778 36 100.0 35 .................................... TTCTACTTCGCACTGGTCTAGGAGAATCTGATTCT 1849 36 100.0 39 .................................... CAGCTTAATATAGTCGCATCAATAGATTGCATTAGTATA 1924 36 100.0 39 .................................... CTACAGAAAGAGTGGCCACCGTAGGGGATCCGGTCTACT 1999 36 100.0 35 .................................... TCTGTCGAAGACGTAAACTATATTATTTTCATCAC 2070 36 100.0 39 .................................... AATTCACTTTTTTTGAAGTTTGTTTTGTTAACTCTAAAT 2145 36 100.0 39 .................................... TGGTAGGTATGATAGGAGAGAAAGAATCTATTCTATAAA 2220 36 100.0 36 .................................... TAAGTGGAGTAGCCAGAGGAATAGACATTAATTGGA 2292 36 100.0 35 .................................... TATAGGCTTAAGGACTTTTTGTACAGGTCTATCGC 2363 36 100.0 38 .................................... CACCAGGGAGCGGTTTGATCCTGGTAGGGAGGAAGCCA 2437 36 100.0 35 .................................... CACTCTTAAAAGTGGCGATAAGCACCTAATATCTT 2508 36 100.0 38 .................................... TCGCGGTAGAATTGGTACACGTGAGTAGAACTGAAATT 2582 36 100.0 39 .................................... TCTATCCCAAAAACCACCAAAAATGATAGGGGTTGTGTG 2657 36 100.0 37 .................................... GCAAGAGAATATTTCTAATTCTGTTTCCAGGTATTAG 2730 36 100.0 40 .................................... TGACTCGACTTGACTCGACTTAGTTCGACTTGACTTAGTT 2806 36 100.0 40 .................................... GGCTGTAGTCTTCAACTACAGGAGCTTCTTTAGCCTCTAA 2882 36 100.0 36 .................................... ATTGTCCATCAGATAGAGAATGATGGCTTGTCTTTA 2954 36 100.0 39 .................................... TTTTGCGGTTGACACTCTCTTCCGCTCTTAAGCCCAAAA 3029 36 100.0 38 .................................... CTCTGGTAGATCTTTGGTGTACTGGGAGAGAATCCTGT 3103 36 100.0 36 .................................... TTGTTCATAATCATAATTAACCTTGTTCATAGACAA 3175 36 100.0 39 .................................... GTATTTATCTCCTATCTCGTCAGGATTGAGGATCCTGAT 3250 36 100.0 37 .................................... CCATGAATAATAACCCCACCAACACCACCAACCCCAA 3323 36 100.0 35 .................................... AGTATAACGATGGTTTGAGTCTATGTCTAATCAGT 3394 36 100.0 38 .................................... ATTGCGTATACAAAAGGACTTAAAGCAAAGCCGGAGCA 3468 36 100.0 35 .................................... GTGTCAGTGTCATTGGTTAATTCGTATTGATACAA 3539 36 100.0 40 .................................... TCTCCAAAATGTGGATATGTATCTGGTCTTTCCTCCTCTT 3615 36 100.0 35 .................................... TTCAACTGAGTCAGGGTTGACGGATATCCTAAACC 3686 36 100.0 37 .................................... GGCAAATTTACCTGCCTCAATCCTAAATCTTTCATCC 3759 36 100.0 36 .................................... TTCTTTTTTAGAAAATATTGACAAAGAGGAAGTTTA 3831 36 100.0 38 .................................... TTTGGTTTCTTCAACCTCGCCTCCTCTAACGTGAACCA 3905 36 100.0 36 .................................... ACATTATGGGTTCCACTCCATTTCTAGAAGGAATGA 3977 36 100.0 34 .................................... TCAAGTCGAGTGTAGGCGTGGGCATCGCGGTTAA 4047 36 100.0 39 .................................... ATGATATATTAATAATGGGGAGGCATGCCATAAATTTCC 4122 36 100.0 38 .................................... TAAGGTAAATAAAAAAGAATGGGCTGAGTACAGGCAGC 4196 36 100.0 38 .................................... CTTAATTAAGCCTATGCTCCCAACTTGTATTAAATCTT 4270 36 100.0 37 .................................... GAGTCAGTAGCGACGTTTACGTCGTTCTCCCTTAACC 4343 36 100.0 35 .................................... GAATCACAGGGGATTCCTGTGGTAGAATCACAGAA 4414 36 83.3 41 ..............................NNNNNN NNNNGAGTCAGTAGCGACGTTTACGTCGTTCTCCCTTAACC 4491 36 100.0 35 .................................... GAATCACAGGGGATTCCTGTGGTAGAATCACAGAA 4562 36 100.0 35 .................................... TGGATACCTTCAGTAATTTAAACTATAAAATAAAA 4633 36 100.0 35 .................................... TTCACGGCACAAGGAAGAATCCTTCTCATTGAAGG 4704 36 100.0 33 .................................... CTATTATCATTCAAATTTAACTAGAGTTCCCCC 4773 36 100.0 35 .................................... TTGTTTTCTATAATACTACCTACTCTGACCAACTT 4844 36 100.0 36 .................................... TTGAACTTGATTGCTTCCTTTTCAAAAGGAGCAAAA 4916 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 4990 36 83.3 0 .......................CT..CGG.....A | A,T,C [5016,5022,5025] ========== ====== ====== ====== ==================================== ========================================= ================== 50 36 99.3 37 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : AAAGCCATTATTGCAAGGATTTTGGCGTATACTTTTTAACTAAATGTAGTTATGTAATTTGGTATTATGTTTTATGATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATATGGGGGAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGGAATAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGG # Right flank : GTGGTCAAACAGCTTATTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCGTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACTTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACCACCTGTTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 191133-191468 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000004.1 Cylindrospermopsis raciborskii C07 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 191133 37 100.0 38 ..................................... TGGTTGCACTAAACCATGAGCTTCTCCTACGTTTTCGT 191208 37 100.0 37 ..................................... TTGTTGGCTCTCTCCCATGAATTTGTTTGAATAGTTT 191282 37 100.0 39 ..................................... CACATCTAGAGGACAAGCTAGGCGTGCTGGAGTCGCAGC 191358 37 100.0 37 ..................................... TTGACAAACTTAAAATAGAGAGATATAGTAAAAACAC 191432 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : GTTTAGAATCATCAAGCTATAACGAACCAATCAAAAAATCTGAACGTTGGATGAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CCTGATGACATTAGAGAAGGTAAGAAAAAAATATTATGAGAAATAGAAGTGTATCTGACATGCCTCTTAGAGAGGGCGATACAGAAATACAGACGGTAGGCTGTAGGCATACTAATCCTGATATTTGTGCAAAGAATGGTTTACATGGAAAGTGCGCTTTACCAATAAAGATAACATTTGCTTTACTCCGCCAGCGTCATGGAAGAAAAAATACATAAATCTTAAAAACGAAGGATTGAAATGAAAATCATTAGCGTAGCGGCTATTCAAAAAAGAGAATATTGGATAGAAGAAATAAGAAAATTAAGCGGTAATTTCGGTGATGATTCAGAAAGATTGGAAAAAGAACTTTCTTATGAAATACAAAATGAAGGACTAGAAACATTATTAAATCACTTGAGACTTAGTGGCGATATACCAGAATCATATGGTCATGATACAAGCGAAGAAAAACAGTATTCTAAATATACTGACGCTCTTCTTTCTGAGTTATATAAGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 909-2205 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000036.1 Cylindrospermopsis raciborskii C07 NODE_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 909 36 100.0 39 .................................... AAATTAAAACAATTCATGTTAGAATAACAGTATAGTTTC 984 36 100.0 32 .................................... GAAACTGCTCAAGCAGCTCTAGAGCTTCTTGA 1052 36 100.0 36 .................................... ATTAACTAATGTTGTTGGATCTGCTGTCCCACTCCC 1124 36 100.0 41 .................................... TACTCCAAGACTTGAAAACACTTGATGCCTATGATCAATAA 1201 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 1274 36 100.0 40 .................................... GAACTCAGTAATTTTTTTTCTTGTTTTATAAGCATACTCA 1350 36 100.0 39 .................................... AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 1425 36 100.0 40 .................................... GCTAGATTGTCGGTAGACAATCTAAGTAACGAATTATCTC 1501 36 100.0 38 .................................... GTCCCGCCAGTCGCGGAACCTTTTCTTTTTGCCTTTGA 1575 36 100.0 41 .................................... TCCCCTTTCATTAAACTCTTCAAACTATCCCTTTTTGTCGG 1652 36 100.0 40 .................................... CTTTTATAGTCTCCTACTTGTTGATTGAGTATTCCTCTAC 1728 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 1799 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 1875 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 1946 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 2018 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 2095 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 2170 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 99.8 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1385-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000315.1 Cylindrospermopsis raciborskii C07 NODE_577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 1384 36 100.0 43 .................................... ACGTTATATTGTGAAAAAGCTCCAGCAAAAAAGAGACCGGATC 1305 36 100.0 37 .................................... TTGCCTGTGGGCTGTAGCTAGCATCGGACGCATAACA 1232 36 100.0 39 .................................... TCTATCAACCGTAGTGCGACATTATACATCTTATCATTC 1157 36 100.0 38 .................................... CACCGAAAGAGGTGGCTGTAAGTAGGTACTTCCCTATA 1083 36 100.0 35 .................................... TTATCATTTGCTTAAACGAGTCAAGTCAAACTAAG 1012 36 100.0 43 .................................... CAAATAGACGTTTGCACTAAAATATCCGGGTTAAAAAGGCAAA 933 36 100.0 40 .................................... TTGATTGTTTTTATTGGGACACGAATGGATTTGAAAAGTT 857 36 100.0 67 .................................... ATAACTACTCTATTGATTCTATTAATAGATTTAATGGAGAGCTTTTAGATGTTGTTATTCCTTCTAA 754 36 100.0 38 .................................... TGTCTACCGCCAATTTGGCGGGTGAGTTCGACTCGTTA 680 36 100.0 35 .................................... GTAGTTACTTATTCCTATTCGTAATTATAACATAG 609 36 100.0 36 .................................... TGGTGGAGCTTGGCTACTCCACCGAGAGAGTAGCTA 537 36 100.0 35 .................................... CAAGTCCAGCCGTGGTGATACTGTCGTTATGGACA 466 34 86.1 0 .......................T.--......C.T | ========== ====== ====== ====== ==================================== =================================================================== ================== 13 36 98.9 41 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTATTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGTTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGGACAA # Right flank : TTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAGAATAATCACTCGTTTCTCCCTTGTGCTGACTGTAATCTGCTTGCATGCATGCCGCTTTTTCTTGCCAGAGTAATACTCTTTTTGGCGTTCTCGGTTTTGAGGACGCTGGACTGGACGCTCCGTAACATCCACAATCACCTCCTTCACATCTGGAAACCTTTTGGTGAATTCCTCCATGCTCCTGAGTTTGCGTGCTGGCAAAACTTGCTTTTCTCCTAAAGTGGTTTCTAGCACAGACAGTAGTCGATGTACCCAATCATGAGCACAGGAGCGGTCAAAGTTGAACAACACACTCAGCA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 55558-51599 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000053.1 Cylindrospermopsis raciborskii C07 NODE_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 55557 36 100.0 34 .................................... CGAACTAAAAGAAAAGAATAAGCTTGTAAAACAA 55487 36 100.0 36 .................................... TAGAAAAAGAAATCAAAGACCTATCGTTTGGATTTT 55415 36 100.0 38 .................................... ACTCAGCGGACACAAATTTGACTTTAGCTACCAATGGA 55341 36 100.0 39 .................................... GCAATTTCTTGGCTCGCCCAAGAGCTGGGAGATCAGTTG 55266 36 100.0 36 .................................... ACCCCACACCAACCCCAACACCATGACCACCAACTC 55194 36 100.0 36 .................................... TTCACTCCAAACTTTTGGCAACGTAGACCTAATCCC 55122 36 100.0 35 .................................... AATAAACAACAAAAAAACCCCATCTAAGCAAGGGC 55051 36 100.0 46 .................................... ACATGGAAACAAAAAAAGGGATCTTGGAGTTAAAACAACTCCAGAA 54969 36 100.0 44 .................................... TCGAAAACCCTTACTGGGTCGAGAGATACGTATTTGAGTCTTTA 54889 36 100.0 37 .................................... ACTAAAGCTTATAATAAAGGAGATAGAGTATTAAAAG 54816 36 100.0 38 .................................... TAGGAGAAGAGTTAACAACAAAAAGACAATATCTAACA 54742 36 100.0 37 .................................... GAACACCCAACCCCACACCACCCCCACCACAATGAAC 54669 36 100.0 40 .................................... TGGGCATGCCTCCCCATTATTAATATATCATGTCAAGTTT 54593 36 100.0 36 .................................... TTTTTTAGCTGACAATAAGCGATAAACAATACAAGT 54521 36 100.0 36 .................................... TTTAGCCGCTAGTTATCCAACTAGCGGTTTTTTCTT 54449 36 100.0 36 .................................... AAAATCCGGATGGGTGGGATAGGATTTAAGAAAATG 54377 36 100.0 33 .................................... CAAGAAATAATAGTCAACCAATGGTGGTGCAAC 54308 36 100.0 34 .................................... GCTCATATGGAAAGGGATTTAATATCTAATTACT 54238 36 100.0 37 .................................... AGCCTATCAAAATAACTTATCTCCAAAATAAGAAAAA 54165 36 100.0 38 .................................... ATATGGCTCTAAGCATTCGAGCCACTCTTTACTTAAGC 54091 36 100.0 41 .................................... TTTCTATAAATATAATATAACCTGATTCTTTAGCAATGTCA 54014 36 97.2 37 ..............................A..... AACCAGGAGATATTCCTATTGGACAACGCAATGATTT 53941 36 100.0 38 .................................... GTTGAGTTAATTTCTGGTTATGAGTTACAAAGAGTACA 53867 36 100.0 37 .................................... ATGGGAAATGGTTGGTCTTCACCAGAATTTATGGGTA 53794 36 100.0 42 .................................... TTTTTCGAGTCTACGAAACCCAAGTTTTAAGAGTTATAGAAC 53716 36 100.0 39 .................................... ATTATTAATATCAGAAATAAATATTGTTTCTACAGATGC 53641 36 100.0 38 .................................... ACTGCGGTCTTGTCACCGTCTGCGTCGCCGTAGTTCAT 53567 36 100.0 40 .................................... TTTTCTACAGGTTTTGGCTTAGCTTCAGGGCGGGCTGTAG 53491 36 100.0 40 .................................... CTGTACAATGCGAGTGCTAAGTGATTTGACGACTCCTCAC 53415 36 100.0 35 .................................... TTAGAGAATCAGAGAAGAAGGGATACACTTTAAGA 53344 36 100.0 39 .................................... ACACCAAATATGCAGCTCCTAGCTGCCCATTGCCCTTTG 53269 36 100.0 36 .................................... GAATGTGACAGTATGTATGAAATCGATAGACGGTAT 53197 36 100.0 38 .................................... GGTAAGCCAGAAAACCACAACTTTAAAGTAACAGACAC 53123 36 100.0 37 .................................... ACACTATACGTAAACCAGTTTGTAAATAATACAATAG 53050 36 100.0 38 .................................... CCCTTAATGGGGTTTTTTTGTACCCCCCGACTGTACGT 52976 36 100.0 35 .................................... AAAAGAAGAGCGATAGCTAACTCCTAGTTAGTTAT 52905 36 100.0 36 .................................... CTAAACTCGTAGTCTGGGGTTCAGACATGGAAGATT 52833 36 100.0 41 .................................... GACAAACATATTTTTTCCTCCTAACTATTATCAATATACCA 52756 36 100.0 40 .................................... AAGCACTTCAAAATAATAATACTTACTGGAAAATATTTTC 52680 36 100.0 39 .................................... TCTGGTTCTGGTGAAGCCTGATTTATCATTACCTTGTTT 52605 36 100.0 40 .................................... TTCTAAACGATGGAATAGTCATTAGACACTAAAAAACCCG 52529 36 100.0 42 .................................... CATCCGTTTTGTTAAGTGTCCATTCTCAATTACGATACTTAA 52451 36 100.0 34 .................................... TTATTGTGATTATCAACATTAGATTAGCGGTAGA 52381 36 100.0 36 .................................... ATCTCAGCACTCAGGAATAGCCGAAACACGCGATTA 52309 36 100.0 42 .................................... GTAGACCGGAAACAACCCCGGGTAGACCGGAAACAACCCGGT 52231 36 100.0 35 .................................... TCACTTAGTTTTCTCATAGTTTAAAACCCTGTAAA 52160 36 100.0 39 .................................... TTGTTGAGTTAAAAAACAGCCCCAAGGAGGGGTAGGAAA 52085 36 100.0 47 .................................... GTCAAGACTCGTGAATACTTTTAGCTTCTGCTATGTTTTTAGCAGAA 52002 36 100.0 37 .................................... GATGCGAAAGACGGCATGAGGTTTATAAAGGCTGTAG 51929 36 100.0 40 .................................... TGACTTTGCTTTAGCTATGGTAGAAAGAGCAATAAGAATT 51853 36 100.0 36 .................................... AGATGGATTACAACAAATACCTGGCAATGATATACA 51781 36 100.0 37 .................................... GTTTCGTCACTACTAATGCTAGGCATTACTCTTTTAA 51708 36 100.0 38 .................................... GATGTACGATAGGATTTACGTACCCACAGGTCACCCTT 51634 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 54 36 99.9 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTAAACTAAGGATATTTTAGCGCAGGAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCTTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 1824-4889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000057.1 Cylindrospermopsis raciborskii C07 NODE_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1824 36 100.0 38 .................................... AATCATTCATTATTTTATTTGGTATACTATCATCTGGA 1898 36 100.0 37 .................................... ATATAGCGGGGACTTTAAAACCATTGTGAGATATTAA 1971 36 100.0 41 .................................... TGGGAAAGCCAATGGAGAAACCCAAACCCACAAAGACACAG 2048 36 100.0 36 .................................... ACTATCTCATATCTTGAATAAATTAGCTTGTTACCA 2120 36 100.0 38 .................................... TAGTTGAGTTAGTTTACTGGTAAAAGTTTATGCGATAC 2194 36 100.0 37 .................................... TAGTTCCTTTATATTATCGAGTTGTTAATCAAATGGA 2267 36 100.0 36 .................................... ATCTAAAACAAGTTGGACTCAAAAGCAAATATCCAA 2339 36 100.0 38 .................................... AATTAATCCTCTTTTAACACAATCGAAGTTATTCACAA 2413 36 100.0 39 .................................... ATAGCATATACCACGATAATAGTAAACCCAACTAGGATG 2488 36 100.0 38 .................................... CTCTAAGGTGTTAGTCATAGATGCTGATTTGAAATCTC 2562 36 100.0 42 .................................... ACTCAAAACTAAATCAACCTCTAGATCTGTTTCAGAAAGATT 2640 36 100.0 35 .................................... TGATTTTAGTAACATTGTTTGTCTGGGCGTTTTAA 2711 36 100.0 39 .................................... ATCTGGTTTTAGCGATCGGTCTACCGGGTTGTTTCCGGT 2786 36 100.0 37 .................................... ATACGGAGCTTTAACCAAAGCCTGAAAATACTGACAA 2859 36 100.0 39 .................................... AGCCAAGTCAAGTTGAGTCAAGTCGAACCAAGTCAAGTC 2934 36 100.0 39 .................................... CCACTTCGATCCCTCCATCGTCTGCCCCTTGGCTCTACT 3009 36 100.0 35 .................................... ATCTAATAGCGTTCATAATTTGTCTCCTTTGTTTA 3080 36 100.0 40 .................................... TGTTCCAAATCTAATAAATACATTATTTTCTCCTTGTAAA 3156 36 100.0 36 .................................... GTTAGGTGAGTTGAGGACTGATGAATCTGCTTTAAT 3228 36 100.0 38 .................................... CACCCAGATTCTAAACTGTTTAGCTATGGTTTTAGAAT 3302 36 100.0 38 .................................... GAATTGAAAATCATTGGCAAGATGATAGTTACTGTCAA 3376 36 100.0 39 .................................... ACACAACTTCAAAGTTTTTCATAAAAGATGTTTGCAATA 3451 36 100.0 36 .................................... TTCCTGTAGCTTTAACCGCGATGCCCACGCCTACAC 3523 36 100.0 38 .................................... GGACTTAAGATAATCACAAGGAGACCAAAAATATGAAG 3597 36 100.0 38 .................................... GAGCTTCCTGGATGCAGTATCCAGGATAGTATCTTCCT 3671 36 100.0 38 .................................... TTGAGATAGCCCTTGCCTGAGCAATATTTCTATCTCTT 3745 36 100.0 36 .................................... AGATCGACTATTTGATTTCCTGGAAAAATCATTTTC 3817 36 100.0 38 .................................... GTAGAAGAATACATAGACCAGGTTGAAGAACGCATAGA 3891 36 100.0 35 .................................... ACTATATAGTCCTCCATTTTGATCCAACTGCTATT 3962 36 100.0 40 .................................... TAGATGCAATTAATTTCTGTAATGCCATGAAGATTATTAC 4038 36 100.0 39 .................................... TAGAAGTGCATCAAGCCTTCGGGTGGGAATTACCCGACC 4113 36 100.0 36 .................................... CTGAGGAGTTTGAGACTCAGAAAGCTTGGTATTAAT 4185 36 100.0 40 .................................... ATGAGTACTACCCATAAATCCTGGTAAATACCATCCATTT 4261 36 100.0 38 .................................... CATCCTGAGAAGAATCCTGAGAAGAAAAAGAAGAAAAT 4335 36 100.0 40 .................................... TCACGAGTTGAATACTCGTTGGTTTCATCAAGTAGTGATG 4411 36 100.0 39 .................................... TTTGCATGTTATCCTGTCCTCTTTCATCTTTGATAATGA 4486 36 100.0 33 .................................... TCAACATTAAAAAAAGGAAACGACATGAGCATA 4555 36 100.0 43 .................................... GTTTGTAAAAAGACAAACCCGTTTAAGACGGTTTACAAAGAAA 4634 36 100.0 36 .................................... AATTTTTTCGTGATCAAAGTGGATCACTAAGTAATC 4706 36 100.0 39 .................................... GTATCTATACTAAAAATAACGATGGCGTTATACTATACC 4781 36 100.0 37 .................................... TCCAAGTATTAGATAACAAGGTTAACGGACAAATTAC 4854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 42 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTAGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CGCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 63954-64142 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000063.1 Cylindrospermopsis raciborskii C07 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 63954 36 100.0 37 .................................... AATTGGTTGACAACCAAAAAAGGTGTGTTATGGTAGT 64027 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 64107 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 41 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTACTTAAGCTTCTCCGGTCTGAAGACACGGAGATTTCTGAAGAGTCCATAAACGAACTTTTTTTATTTCATCTACCTGATAGACAAATTCTGCATAAAATTGTCTATTTCTAGGTAAAATGCGTACTTGATTGATTTGAAGTCAAGGTTAGATGGCATTGGTAGACAAAAAGAATCTAGGTTCTTGCGTCTGTTTTATGGACAATTAATAGAAAAGTGCCAGTGTAATAAACTGCGTAGACGAAAATTGTTGAGGTTACGAAGTCCATATCCCAGTCGTTTAATCAACTTGAGTTTATTATTAATACCTTTAACCCAACTAAATTCCCACCTGCAACGAAGTGAGGTGGGAACTATCGGACTATATAAATGCTTAATTATTCGATAGACGTGCTTTTACATCCGTTGCAAAGTCTTCATATCTTCTCAAAGGAGTGACTTGTACATGGACATTTTGACCCATTTTTTTCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1650-3518 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000067.1 Cylindrospermopsis raciborskii C07 NODE_86, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1650 36 100.0 37 .................................... CTTAAAAGAAGTGTTAGATAAACACTTCGACTTATAC 1723 36 100.0 38 .................................... ACTTGAAATAGAAGTTGATTGCTTAGTGGTTAAAATGG 1797 36 100.0 37 .................................... GAAAGGTAATCCAATCAAACCCCCTTGTAACAGTCTC 1870 36 100.0 38 .................................... GGTCAAACCCTTGGGGAGGGATGATTTCTTGAGCAATC 1944 36 100.0 37 .................................... TCCTCTGTGAGTTTGATCCATATGATCAAACTTCTTC 2017 36 100.0 38 .................................... TTTTTTTTGTCTATGGTTATGCCATCAACTCCAGCCGA 2091 36 100.0 37 .................................... TTCAATCCTCAGAAGTTATCCTTACTCCCGAGGATTC 2164 36 100.0 36 .................................... TCGAAACATATCCATCAACTATATGGGAACATCATC 2236 36 100.0 39 .................................... CACTTCGATCTGTATGAACAAGATTTTTTTAATTACTTC 2311 36 100.0 36 .................................... TGGGAAACCGAAGACATCCCCAGACACCACCCTGCC 2383 36 100.0 36 .................................... TCATTTAATCTAAGTAATAAATATGAAATCATTGAA 2455 36 100.0 36 .................................... AGGAAAAGTCTTGCTACTATAGGACAAAAATGAGAC 2527 36 100.0 36 .................................... AGGAAAAGTCTTGCTACTATAGGACAAAAATGAGAC 2599 36 100.0 37 .................................... AAAAAAAAGCACTAAAAATGTTCAGGTATTACGATAT 2672 36 100.0 41 .................................... ACCCTTATAAGGTAGCCGGGCGGCTACCTCTTTTCTTTTAA 2749 36 100.0 39 .................................... TATGAATTTAGGGATAACAGCAGGAACGTACGCTAAGAC 2824 36 100.0 40 .................................... TTTATTATAAGGGAGGACTACATAGTTCTCCACTTCGATC 2900 36 100.0 33 .................................... CTGTTACAGAGTGGCACAAGATAAAATCCTCAA 2969 36 100.0 36 .................................... TTTCTTTAAGGAAGACAAGTTTGCCTTTGCAGGAGA 3041 36 100.0 40 .................................... ATTCTGTTAATTCCATATTCTCTTTCTCCCTTTCTGGTTT 3117 36 100.0 42 .................................... TATGGAGGAATATCCAGATCAAAAAATCAAAAACTCAAAACC 3195 36 100.0 35 .................................... CGTAAATCAGGGTTTTATACGGCTTCTTTAACTTC 3266 36 100.0 37 .................................... GTTTTAATAGGTTAACTCAAAGAAAAGACTTTTTTTT 3339 36 100.0 35 .................................... TACAAAAAATGAACAACTCCTTTTAATCCCCTAAG 3410 36 100.0 37 .................................... TTCTACCTAAATGGAGTTACTCCATTTATTTCCTGTT 3483 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 26 36 100.0 37 GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGC # Left flank : CCATTATTAGGCGATCGCATTTCTTGGGGTAACACCAGGAGATGCGATCGCTCTTGTGTATAGGGGTTTCGAGTAGTTGTTTTATGTGGGTAAGGAAGTGAGAGTTCTAAGATGGGCGATCGCCTGACAGATAGGATATTCAAAAGTTGTTTTATTCGCTCCATGAGATGCGATTTCCCATAGGGAGTGCTTAAAATCCTATTTGGGAGTAAGTGGTATGTTATTCTCCCTGAGTTTCGATATGCGATCGCCAATGGAGAAAGAGTTTAATTTTCCCAGACATCAAGAAAATGTTCCCATGTACGTGGTTGCTCAGCAGCAGCAGTTTCAATAAGACGTTTTCCTCGTCCCTTTTCCCTCCATTGCTTGGAAACGAGCAGGTCGTAGACATAGAGTCCAAATATTCCATCTTTTCGGCAACGTATATACCCGATTATACAGTTATTTGCCACAGCGACGTCAACAATACAATTGTGTCCAAGGGCTATGGAACTCCGAGT # Right flank : CCCTCCATTTTAAGCCCTTGCCCTGACTAGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAATCTCTTCGTTAATTACTGTTTTTTTTGTCTTTATTTTTATCATTATTCTTTCTTATTACTTAAATATTTATATCCATTTTACCCTATATTTCCTCGTATTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 139-770 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHS01000141.1 Cylindrospermopsis raciborskii C07 NODE_214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 139 36 100.0 38 .................................... CAGGAAATTGCGGAAGGCCGCAATAACTCAATTATCGG 213 36 100.0 35 .................................... ACGTATTCTTGTAGCTCTTGGCTATCAAACCACTC 284 36 100.0 42 .................................... GTTATATTCGCCCCGGCGAAAACGGCGAACGAGAACGTATTA 362 36 100.0 38 .................................... GAATGATTTCTTGAGCAACCGCAGGAGGGTCTTGTATT 436 36 100.0 38 .................................... AGTTCCTCAACTCCATCGTATTCCGTTATGTAGTAACG 510 36 100.0 35 .................................... TAGAGTTGGGTAGTTGGGTATTTTGGACAATTCTT 581 36 100.0 44 .................................... ACGGTGTGATAGTTATTATTGTACATGGGCATACTTTTTTACTA 661 36 100.0 38 .................................... CGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGA 735 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 99.7 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGGG # Right flank : TTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //