Array 1 49814-51102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARB010000025.1 Pseudomonas gingeri strain IPO3777 IPO_3777_S46_L003_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49814 28 100.0 32 ............................ ATCAGGGAACAGCGAAGAAAATGCTGATTGCT 49874 28 100.0 32 ............................ ATCATGATCGACCCTGAAAACGGCCACTTCGG 49934 28 100.0 32 ............................ TCCCCCCCAGTCGCAAACCTCGGTAACCGCCG 49994 28 100.0 32 ............................ ATTCGCAACATAATCAACAGTTCAGATACCCG 50054 28 100.0 32 ............................ TGCATAAGGCGGGCTTCTTTGACGTGATGCTT 50114 28 100.0 32 ............................ ACAAAGAAAAGACGCCAAGCTTCGGCGTAGTC 50174 28 100.0 32 ............................ TGGCACCGGCGACGAATACGTAGGAGAGCTGA 50234 28 100.0 32 ............................ TCCAGTTGCAACCACTCAAGACGCGAAACTTC 50294 28 100.0 32 ............................ TTCAGTGCACGGATCGCAATCGCGGATTTCAT 50354 28 100.0 32 ............................ ACCCTTGCCCATCGCCTTGAATGGCTTGCGAT 50414 28 100.0 32 ............................ TGATGCAGCCGAAGGATTCGCCCAAAACTTTT 50474 28 100.0 32 ............................ TGTATGTCCGCGGCATGGTACTGGTCGAGCAG 50534 28 100.0 32 ............................ TGAAAGGATCCCTGATTGTCCCGCTGATCAAC 50594 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 50654 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 50714 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 50775 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 50835 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 50895 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 50955 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 51015 28 96.4 32 ............A............... GTACAGCAGCGGTACCGGGTTACCCTGGACGC 51075 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCGGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGTGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : ACAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCTGATCGCATCGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : GCTCACTGCCGTATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52683-53370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARB010000025.1 Pseudomonas gingeri strain IPO3777 IPO_3777_S46_L003_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52683 28 100.0 32 ............................ AATATCCCAGTCGTCACCAATGCAAAAGGCGT 52743 28 100.0 32 ............................ AGGCACACCTACGCAACAATGTGCCTCATGTC 52803 28 100.0 32 ............................ AGCGATGTCGCTAGACGTCACGGGACCGAGTT 52863 28 100.0 32 ............................ ACCAGCCAGATTCAGCGCCGCCTGCAGGCCGA 52923 28 100.0 32 ............................ AAAATAGATGCCTTGCGCTTGGTGGGCGCGCT 52983 28 100.0 32 ............................ AGGGACAGATCAATGCGAAGCTGGGTCTTGGC 53043 28 100.0 32 ............................ CCGACGACTCTTACGGTCATCGCAGCCCAGCC 53103 28 100.0 32 ............................ TTCCATACCGTTACCGGCGTATCGATATCGAG 53163 28 100.0 32 ............................ AATCAATAAACATGGGAAGTTCCGTCAATACC 53223 28 100.0 32 ............................ TGCTGCTCCCGCGATACTGGTCGCAGTTCCGG 53283 28 100.0 32 ............................ GATTATGAGTCGGACGCTCTAACCATCTGAGC 53343 28 85.7 0 .C.........CAT.............. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCGTTGGGCAGGCCATTGTTGGGGGCATTAGTGTCAGGCATAGGCGTCCCTTTCGTGTGAGAGCCCCCAGGTGCCCATGTCGCGCAGACCCATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGTCGATAAGCCCGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : AAAAGGCGGATTGCTGTTCACCGAGGTGGCGCGCGTACCGCCGCATAAGCGGCGCAGAAATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCTGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCTGCTCAACGATTAAACTGATGTAATCGGCTGCTCGCTCATGGAAGAAATCCGCTCCTCCGATCTCAAGACGATCCTGCATTCCAAACGCGCCAATATCTACTACCTGCAGCACTGCCGGGTGTTGGTCAATGGCGGTCGGGTCGAGTATGTGACCGACGCCGGCAAGCAATCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTATTGCTGGGGACCGGAACCTCGGTGACCCAGGCGGCGATGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 62229-63335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARB010000025.1 Pseudomonas gingeri strain IPO3777 IPO_3777_S46_L003_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62229 28 100.0 32 ............................ TTGCATTTTTTGCGCGTCTTGAAAGCCTTTCT 62289 28 100.0 32 ............................ AGAGATATCGGAAAGCATCATGCACATGTTTG 62349 28 100.0 32 ............................ AGCGAGCCGATTGGGCGCATGAATACCAGCGT 62409 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 62469 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 62529 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 62589 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 62649 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 62709 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 62769 28 100.0 32 ............................ GTTGAGCGGCCACAGCTATCGCTCTAAGGTTG 62829 28 100.0 32 ............................ TGGGGGTCTCCGTCGATGAGTAGCGTTGGCCC 62889 28 100.0 32 ............................ AGGAAGCGCCGGTGAAGATACTGACAGGCCCT 62949 28 100.0 32 ............................ TTGATGCAGCTGCAATGACAGATTTGCTCGAG 63009 28 100.0 32 ............................ AACTACGCGTATCCATCTCTCCACCGTTCACC 63069 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 63129 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 63189 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 63249 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 63309 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.6 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : CGCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCATGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //