Array 1 5078-4844 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYK01000037.1 Streptococcus salivarius strain BIOML-A8 scaffold37_size5092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5077 36 100.0 30 .................................... ACAAGGGCAATCCTAAAGTCGAATGGATGA 5011 36 100.0 30 .................................... CTGAGTTGTTACCGATAGAACCGACGCCCT 4945 36 100.0 30 .................................... CGCAGTTAGTTGAGAATGACACGACATTCC 4879 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TAATGCTAAGGTCT # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAAGGGTTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTGAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTATATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTAGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAGT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 147723-147956 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYK01000004.1 Streptococcus salivarius strain BIOML-A8 scaffold4_size147964, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 147723 36 100.0 30 .................................... TAGCCCGCTTGAGCAGTTTTATGTGAAGGA 147789 36 100.0 30 .................................... TTGATATTTTAATGACTACTGTAGGGGGAG 147855 36 100.0 30 .................................... GGGTTGTCATTTTCATATGGAGTGGATCAG 147921 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCTTATGATAGTTTTTATAAGAAAATTGGTCAGCTAGCCCAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGACCAAGGATATCTAAAGATTGACGAGGAAAGTAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAAGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAAAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : CACTTCTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 33566-34755 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYK01000015.1 Streptococcus salivarius strain BIOML-A8 scaffold15_size58024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 33566 36 94.4 35 .......C.............A.............. AGTCGTTTGTGAATACGTTAATCCCTACAGCTTTT 33637 36 94.4 36 ........T............A.............. TGCACGAACAATATTGTTTTTGTAATCGTAATCTTC 33709 36 94.4 34 ........T............A.............. ATCTTTGTAGCTCCCTTTCTTTATCTTACATATC 33779 36 94.4 36 .............A.......A.............. TTGGAAAAACTGTTTATAAGAGCCTTTTTTGTGCGT 33851 36 100.0 37 .................................... ACAGCATTTACAAGCTTAGTCTTGTAGTACAAGTAAA 33924 36 94.4 36 ............A........C.............. GCGTAAAATGCAAGCCCATAGTTATTTTCTTCATCT 33996 36 100.0 36 .................................... TTCTTAGTCCAATGACTACGTGGGGAAACTCTCTCA 34068 36 97.2 36 .....................A.............. GTGCCGTTGAAGTTTACGGTTACTGGTTTACCTGGT 34140 36 86.1 35 .............A...T...C.......A....G. AGCCTGGCGAGCTACCCAACTGCTACTACCCTGCA 34211 36 77.8 37 TTG...C.T....CC......C.............. CTAGACCTAATTCGATTTTTCCTTGATTGTTTGCCAT 34284 36 83.3 35 .............CC...CT.A.C............ TATTTGTCTGTAAGTTTGTAACTTGAAATGTCATT 34355 36 94.4 36 .............A.......C.............. AAACGACCAGACAAAACGACATTATTCATAAGATTT 34427 36 88.9 38 .............CC......AT............. TCACTAGCTTTTTCCTACTGATATTCGTTCCTCAAAGT 34501 36 91.7 38 ..............C......A.........A.... GATGTCAAATCAGAAAGTGTCGATATATCCTCTTGACT 34575 36 94.4 37 .............A.......C.............. GATTACCTTACGACTCAGATTTTCAAAACGTTTATTA 34648 36 94.4 36 ............A........G.............. ACATAGATTTTTTTAGTCATTGTTTTTCTCCTTTTT 34720 36 80.6 0 .....................A........TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 91.8 36 GATATAAACCTATTTACCTCGTGAGGGGACGGAAAC # Left flank : AAGAGTTTATTAGGGCTTTTAGAGAACTTGACCCTAGTCTGTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGAGTTTGCCAAACAAAAAAACATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGTGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTTCTTAATGATATCGAGAGCTTCTACAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGGGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATTGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACTAAGGTAATCCAAGGGAAAGATGACACGCAGTGGGTTGTGCATCTGCTCACAGATGACCTCGAGGATAAAGTTTTTATGACCTTATTACAGATTAAAGAAGTGTCCTTAAACGACTTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCTGGAGTTGGGAGCGGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAG # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTTACCTCGTGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //