Array 1 171640-171062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000015.1 Streptomyces nitrosporeus strain JCM 4598 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171639 29 100.0 32 ............................. CGTCTACCAGCTCGCAGAGAATGTTTCACCAG 171578 29 100.0 32 ............................. TCCTGACGGCCGCAGTCACCATCACCGCGCCC 171517 29 100.0 32 ............................. ATCGAGTTGAGCTGGTCGCGGATCTCGGTGTT 171456 29 100.0 32 ............................. CCGTCCGCAATCAGGGCTTTGACCGCCTTGGA 171395 29 100.0 32 ............................. TACATGGCCCTGACCGGCGGCAAGCTCACCAT 171334 29 100.0 32 ............................. GGCGCGAAGTCCGCCCACTACTGCTGGACGGA 171273 29 100.0 32 ............................. GGCGGTGGCAGCAGAGGCAAGTACCGGGCCGA 171212 29 100.0 32 ............................. GACCCGGCCGCGTCGGTCACCGTGCGCTACCG 171151 29 100.0 33 ............................. CAGCGTGTGTCGCAGCTGGCGCGTGAGGACCCG 171089 28 93.1 0 ......................C-..... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGCCGGGGAGGGGGTGCTCGGTTGCCGCTTCAGGCGGGGTGGGTGACGTGTCAGGGTCCGGGGGATGAGCATGTCTTCCGGGGCGGTGAGGGGGACACCCACTGCGGGCCTTGCCGTCGTCAGGTGGCCTGGGAGGTCTGGGAGCGGAAGCGGGCCGCGCAGTTGGCGGAAGAGGCGGCGGGCGGGACGGGTGCGGCTGTTCCTGCGCCTTCGCTGTCCGGGCCGCCGGGGCTGTCTGTGGGGCCTGTGGTGGATGACGATGATGATGTCTATCGGCATGTTCCGTGGCGGGAGCGGGTCGCGGCTGTGGAGGCGCAGCGCGTCGTCAGTACGTGAACGGTGTTCTCGGTGGTGGGGTGAGGGCCTACCCTGGGCCGGGCGGCAAGGGGGTGTGCTTGGCGGCTTCCCCGTGCCCCCTGGGAGGTAGGTGCGAAATGTCCGAGTCGGTGAAGTTGGTAGAAACCGCTGCTCCCGCCGGATAAACCCGCAGGTCAAATAGA # Right flank : AGGCGGCCGGGCCGCGCCAGGCCCGCCCCGCTCGCGTTTCGCCCTGCCTCGCCCGCCCCGCCCCGCCCCGCCCCGCGACCCGCACCCGGCCCGGCCCGGCCCGCACCCGGCCCGCCCCGCTCCCGGCGTGGGATGGCTCCTACCTCCCCTCCACCCGGGCGGCATAGGGTGATCGCATCGGCGCGCGGCCGATCGCCGTGCGCAGCCGCGGCACTCATGTGGTCACTGCTTCGGCGGCGGGGAGACGCACGGAACTGGTCGCCGCGGGCCACTTCACGTGAGCGGAGGCGGATGTGTTGATCACTGTTGCGGACGTGGAAGCCGCGGCCGAGCGGATCGCCGGGCATGTCGTACGGACCCCGACGGTGCCGAGTTCCGGGCTGTCGGCGTTCCTGGGCGCGGATGTCACCGTGAAACTGGAACTCCTCCAGCGCACCGGTTCCTTCAAGGCGCGGGGTGCGACGGCGAAGCTGCTCGCGCTCGGCGAGGACGAGCGGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178844-178633 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000015.1 Streptomyces nitrosporeus strain JCM 4598 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 178843 30 83.3 31 .............ACA......C.....T. GGTACGGTCGCGAGCTGGCCGGAGGTACGCC 178782 30 100.0 31 .............................. CCCTCTACGGGCAGTGCGACCTGACCCGCCC 178721 28 86.7 31 ........--...C..........C..... CCGGCGTCGGCCACACCGCCGGAACCCTGGC 178662 30 86.7 0 .......................AG...GA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 89.2 31 CTGCTCCCCGCGCGTGCGGGGATGACCCCG # Left flank : GCGTACTGCTCGAAGGCTGTGCGCATGAGATGCGACGCCGCCGCGTCCAGGCTCTGATCTCCCGCAAGGGCTCCCCGAACATCAAGGGCCTGGGCAAGCTCCGCTAGTCGTCGAGCAGCCCCTCGCCCTGCTCCACCAGCTCAAACGCCTCGCGGTCCGCTGAGAACAACGTATCGAACTCCACGACGCCTTCGTCTCGTTGGGTTGCAGCCTCATCTGCTCCACACGCCTCAAGAAGTCCCGGCCGTGATCGCGTTACGAGCCCCTGAGGGTCTGCCGGAAATTAACCTGTGGGTTTTGCAGCTTGGTTTCGCAGGTCAGCATGTCGCCGGACCGCATGTTGTTCCCCGGCAGACCCTAAGGAGAGCGGCTCCTGACGAACGATCTTCTTCGCGGACTGCCGCCCACGACCAGACTGAGCCCCCCGAGTACGGGTCACACCAGCCCCTTGACCTGCGACTTCAAGTTGGCGGAGTCTCCGGGGAAATAGCACCTCCGTG # Right flank : ACCCGCAGCACTCCAAGCCTCCATGGACCGTCTGAGCGCTCAAGCCCTTACTGGTCGCCCTTCTGCCCTCGGCCGACTGACGGGCAGGGGCCGGAGGCCCAGTTGTTGCGTTGGTTGTCGGCGAGACGCTCCGCGCGGGTCTCTTGGAGCCAGATGAGGTTCGCCAACACGTCCTCCGGGTCCAGCGCGTTTCCTGGTTGCTGTACGGGTGTAGGAATGGGCTGCTGCTCAGATTCGGTCATGTGCAGGGCCTCTTCTCCGCTGCCTGGTAAACGGCTCGCAGGTCGGCGCCCTCGGCACAGTTCGTCCCGGTGGTTCTGCAAGTCGCACAGCCCTGGATGTGAACGATGTAAGCCCGGTACGCAGCCTCCAGGACAGGAGACGGCGGAGTGGTCATGACGCCACTTCCACGAGGCAGAGAGGGCACCTGCACACCGGGTAGCAACTGGTCGTCTCCACTGTGTCCTGCGGGGCGACCTCGGTTTCCTCGCGCAACACCC # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 181403-181252 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000015.1 Streptomyces nitrosporeus strain JCM 4598 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181402 29 100.0 32 ............................. CTCCGCCACATCGACCAGCACCTCACCCAGAC 181341 29 100.0 32 ............................. ACCACCGGTGTGAGGGCGGTGTAGATGCCGAA 181280 29 93.1 0 ............T........C....... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GAGCGACTGCGTGAGTTCGAGCGTCCGGTACTGGTCGTATGGGCGACCGAGGACAGGCTGATGCCACGTGAGCACGGCCCGCGCCTGGCCGAGTTGTACCCACAGGGTCGTCTGGTCGAGATCGCTGACTCGTCCACCCTCGTCCCCGAGGACCAGCCCGAACGGCTTGCCGAAGTGCTGACCGACTTCCTTGCCCGTACTGGGGCGGAGCCGGCTGGAGGCGCCAGTTGAGCCCGAGAGCGGAACGCCTGTCTCGTTCATGCCCCGACTGCTGAAGCGTGGGGCCCGGAGGGTGCCCATGCCGCTCTGTGGCCGGGGAGTTGGCCTCGGTGTCGGCGTAGGCTCTTGGTGGGCAAGTGAGGATTTGGCCCTGAGTGGGTGGCGGGAGGGTGCACATGATGCCCGCTTTGAGTTTTTCAGGGAATGTGGGCGAAATGTCCGAGTCGGTGAAGTTGGTAGAAACTGCTGCTCCCGCCGGGTAAACCTGCAGGTCAAATAGA # Right flank : GTCATGAACTCCATGGCCTTGCAGTCGTTTCGGTTCCCGGCGAGCGGCCGACAGACCACGACGGCCGGGCGGGTGTCGGCGTCGATGACGACCTGGTGGTTGGTGGAGTACTGGTAGTTCTTCGACCGCTCGGCAATGGTGTGGTCGCAGGTGGGGGCCCAGGGTGCCGTCCACGATGAGCACGGTCCCCTTGGCGAACCTCTTGCGGGGTTGAAGCGCGAGCATCGGCCCGGGGTGGTCGATGATGCGGTCCGCCGCCGACTTGGGCACCCCGAACAGCGGGGCGAGTTGTCGCATGGTGAGGTTCGTGCGTCAGTAGGCCGCGACCAGCAGAGCCCGGTACTCCAGCGGAAGGCTCCAAGGCCAGCTCTTGCGGGCGCCGACCCGGGCACGGCATGACCCTCAGTTTCGTGGGACCACGGAACAGCGCTTAGGGCCTGCCGGGGAACAACATGCGGGCCGGCAACACGCTGACCTGCGAAACCAGGCCGCAAAACCCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 185700-185549 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000015.1 Streptomyces nitrosporeus strain JCM 4598 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185699 29 100.0 32 ............................. GTCAGCTCCCGGATCCCGCACCCTCCGCTGTG 185638 29 100.0 32 ............................. TTCCCCGCCGCGGTGACGGTCTCCTCGTCGTA 185577 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGGGCTGGTGGGCCGGGGGGAGGGTGTTCAACTGCCGCTTCAGGTGGGGTGGGTGACGTGTCAGGGTCCGGGGGATGAGCATGTCTTCCGGGGTGGTGAGGGGGACACTCATTGCGGGCCTTGCCGTCGTCAGGTGGCCTGGGAGGTCTGGGAGCGGAAGCGGGCCGTCCAGCTGGCGGAAGAGGCGGCGGGCGGGACGGGTGCGGCTGCTTCTGTGCCTTCGCTGCCCGAGCTGTCCGTGAGGCCCGCGGTGGATGACGAGGACGACGTCTATCGGCATGTTCCGTGGCGGGAGCGGGTCGCGGCTGTGGAGGCGCAGCGCGTCGTCAGTACGTGAACGGTGTTCTCGGTGGTGGGGTGAGGGCCTACCCTGGGCCGGGCGGCAAGGGGCGTACCTGGTGGCTTCCCTGTGCCCCCTGGGAGGTAGGTGCGAAATGTCCGAGTCGGTGAAGTTGGTAGAAACCGCTGCTCCCGCCGGATAAACCCGCAGGTCAAATAGA # Right flank : TGTCTGCTCCTCGTGCCAACGCGTACAGCAGACAGTTGCACGCAATGCCCAGCAGACTCCGCACCTGCCGCAATCCCGCGCAACCGGTCCCCGCGACACCTTCAGGACCAGCATGCTGATGTTCCACCCGTAAGAACGGAGCCCCCTGTGACGCTCAGGTTCCTCGGCACCACATCCGAGCACGGCAACTGCCCCACCCTGTACGAGATCGTTGAAACCGGCGACATCGTCGTCCAGGGCGACCTGCTCACCGATCCCGAGCATCTGGCCCAACTCCGTGATGTGAGTGAACACGAGGGATTCGTCGTGATCCCCCGGGGCCTGCTGACCCGCTTTGCCCCCGAGGAGTGACGTGTCACCGCTGATCCCCTTCGAGGAGACCACTCATCTGTTCACGGACTTCCAGCACACCGCGTTCCGGCTGGAGACCCGCCGCGGGTACGCCACCGACCGGGCCGGAGCCAGGTTCCAGGCGTTCATGCGCGGTATCGACCCGCAGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1751-688 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000021.1 Streptomyces nitrosporeus strain JCM 4598 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1750 29 96.6 32 .C........................... GAACTGCAGTACGGGTATGGCTGGGTCGGATG 1689 29 96.6 32 .C........................... GCACAGACCCTGTGCCGGCCCTGCCACCGGAC 1628 29 96.6 32 .C........................... GGCGGCGCCCCCAGCGCCCGCGTCATCGTTCT 1567 29 100.0 32 ............................. GCTCTTCGTCGGGCGATCATCGGCAGCTACTA 1506 29 96.6 32 ............................T GCGGACTCGAATCCCTGGTGCCGGTGGCCTTC 1445 29 100.0 32 ............................. CTTTGGAGCGTGTCTGGTGGCAAGGTATTCGG 1384 29 100.0 32 ............................. GTGGGGCAAGGACGAGGACGGGGACGGTACCG 1323 29 96.6 32 .............G............... ATCGCGGAACGCCTGGTCCAAATCGTCGTTGC 1262 29 93.1 32 ........C....G............... CACACATTGCTGGCCACGGGGTGGCTGTATCT 1201 29 93.1 31 ........C....G............... GCGGGCTTAGTAGTAAGGGAAAATCTCCGTC 1141 27 89.7 32 ........--...G............... AAGGTTCGGCTTACGTGCCGTGCCGGGTGTGA 1082 29 89.7 32 ........C....CT.............. GTCTATTCCACGCTCACCATCACCGTCTACGA 1021 29 96.6 32 ........C.................... GCCTGCACCGGCGCGTGGACGCCGTTGAAGGT 960 29 86.2 32 ...T....C....CT.............. CCGCTGAGCCCGCCGGCCCTGGTCGACGGTGA 899 29 93.1 32 .............CT.............. GTCTGCTGGACCGTATCGAGGCTTCTCGACGC 838 29 89.7 32 ........C....C..........G.... GCCACGAGGTAGAAGCGGGTCAGCTGGCTGGA 777 29 100.0 32 ............................. ACAGGACCGCTGGGCCACGTGGTGGAAGGGAT 716 29 72.4 0 ........C....C.........TTTATT | ========== ====== ====== ====== ============================= ================================ ================== 18 29 93.7 32 CTGCTCCCTGCGCACGCGGGGATGACCCC # Left flank : GGGTGCTCGCCGCGGGTGGGAGGCCCGGGGTGGGAGTTCCGTCGCCGGTGCCAGGACCGGCCACCCGCCCCGGGCCAGGTCACCCTGCCACACCCGGATCCGTCCGCCGGCACCCGCATCCCGCCCGGCGCCCGACACCATCGCCGACACTATGGCCGACACTATGAGCGGCACTATCAGCCACGGTATGGCCGACACTATGGCCGACACCTCCCGCGCGCCAGCCTCTGCACAACCGCAGGTCAGACCCCACTTCTCCCATGGTGAGTACGCAGACTTCTCTCGTTCTCCCGGACCCGGACAGGCAGGCGGGACGGTGACGGGCACAGGGACGGCCTCAAGAAGACGGACCACGCTGCGCTGGCCCCGGAGGGCCGCGGCGGCCTGGGCGGCCACCGCGAACGGAACGAGCGTCCAGGGCGGGTTCGGGCGGTATGCCGGTTTCGGTGAAAGTGGTCCGGGAGACCGGGACGGCGTTGTAACGTCGCAGGTCAAGAAGA # Right flank : TTTCCCGCAGGACTTCCCGGTATCCGAAAGTGTTGAGTTTCCCAAGGGGGGATGCCCGGTGGTCCCGGAGTCCTTCCCGTGCGGCACCCAAAGCACTCTCCAGCCTTTAAATGGGACCGGCCGTCCGCCGAATACGCATCCGTGGCCGTTCCTCTCTTTCCCGGCGGCCACTGATGGTTGGTTCGTGTTTCTACCCGTGTATCAGAAGGCGCCCCGGGGTGTGGTCGCCGGGTGTACCCGGTAGTGGTCAGGATTCCCAATCTCTACACAGGGCATCAGGTTGATGCACCGGGGCCGGGATGGTGTCCCGGGGGTGTGGTCTGGTTTCGCCAAAGGAACATGCTGCATCATCTGATGCAGTGGGGGTGTGGGCTGGTTCCAGAGTTCATCCGGCCCCCTGTTCTGAAGCACAACACCCACCACCCCCCAGGGCCCGCCGCCCGGCCCTCCCGGGCCCCGCGCCAGGGGGCTGCCCGTCCTCCCGCCACACCGCCCACCGC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCTGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12236-11779 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000048.1 Streptomyces nitrosporeus strain JCM 4598 sequence48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12235 29 100.0 32 ............................. GTCTCCGGCGTGGTGGGGCCCATCTCCGAGGC 12174 29 100.0 32 ............................. ACCGAGGGGTCGCGGGCGTACGGGGACCGGCT 12113 29 100.0 32 ............................. CTGGACGTGGCCGCCTCCGGCACTCCTGGGGC 12052 29 100.0 32 ............................. TCGGGTGGGTCGCTACGGGATGCGGTGGACCG 11991 29 93.1 32 .............CT.............. GTGCCGGCACCGGACCCGGCCTCCAGGACGTC 11930 29 96.6 32 ........T.................... ACCTTTTGCTTGAGCCACGCGTTGCGCAGGAC 11869 29 93.1 32 .............CT.............. AACCTTCCGGCTGCCAAGCAGCTGGTTGAAGG 11808 29 89.7 0 ........T...T........G....... | T [11783] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CAGACCCCACTTCTCCCGTGGTGAGTTCTCAGACTTCTCTCGTTCTCCCGGACCCGGACAGGCAGGCGGGACGGTGACGGGCTGCGGCGGCCTCAAGAAGACGGACCACGCTGCGCTGGCCCCGGAGGACCGCGGCGGCCTGGACGGCCACCGCGAACGAAACGAGCCCGCATAAGCGGTTTGGGTGGTATGCCGGTTTCGGTGAAAGTGGTCCGGGAGAGCCGGACGGCGTTGTAACGTCCCAGGTCAAGAAG # Right flank : GTACGACGATTCCGTAGCCCGGGCCTCTGGCCTTTGTACGTCGCAGGTCACAGGAGCAGTGCCGTCATGCCGTAATGCCGTCATGCCGTAATGCCGTAGGTGCGGCGGTAGGTTGCCGGGCATGGTGATGACACGAGATGCGCTGCTGAACCAGAAAGGCGGGGTCGCGAAGACGACGACCACGCTGCACCTGGGTGGCACGCTCGCGGCCGCGGGCCGCAAGACGCTCCTGGTGGACATGGACGGGCAGGGCAACCTGACCACCGGTCTGAAGCTGGAGAGGCTCAACCCGAAGGGCGAGCTGACGCTCGCCCGCGCGATGCTCGAAGGCTGCGACCAGGAGGCCGCCCACTCCCTGGTCCGCCGGCACTCCGAGAACCTGTACGTGATCCCGTCCGCGCTGGACCTGTTCACCCTGCCGCGCCATCTGCACAGCGCCCGCTCCTCGGAGGAGCGTCTGGCCTGGGTGCTCGAACTCCTCCAGGACGAGTTCGACCACT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : CTGCTCCCCGCGCCTGCGGGGATGACCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5636-5847 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUV01000052.1 Streptomyces nitrosporeus strain JCM 4598 sequence52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5636 29 100.0 32 ............................. GGCCGTACTCCACGGACTGAAGGATGTTTCAG 5697 29 100.0 32 ............................. GGCGCCGGACCGCTCCCACGGCCCGACGCCCG 5758 29 100.0 32 ............................. AAGGACCACTGGCGGGCCCGGTTCAGACGGGA 5819 29 93.1 0 .............CT.............. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GTCGTCCCGGCCGCTCCCGCCCCGTCTGTCCCGCCCCCGGTCCCTGTCCCGCCGGCCCCGGCCTCCGTCGTGCTCCCGCCGTGGGTCAAGGTCGCCCTGGTCGTGCTCGCCGTCGCGGTCGTCGTGATGGCGGCCGGGTTCATCGGGTTCGTCGTCCTGGTCCGCCCCGGCGCCTCCGGACCGCTGAACACGATGCTCGCCTTCGGCGCCTTCATCGTTGCCGCGGCCGCCCTGGTCGTCACCTGCGCCCGCAAGCAGCAGTGACCCGGTGACGCGCCGCCCCGCCTGGCGAAGCAACTTCCGGAGGTTCAGGAGCGTCGGCGTGGGCGGAGCGCAGGAGCTCGGCCTCGGTGTCGTCGGTGAGGTGCTCGCCCTGGTCGAGGAGGAGCTGGCACAGGCCATCCGCCCCGGGCCGCAGGGCGGGTTTGGGTGGTATGCCGGTTTCGGTGAAAGTGGTCCGGGAGAGCGGGACGGCGTTGTAACGTCGCAGGTCAAGAAGA # Right flank : CACCAACCACAAGCCGGTCATCCACGAGACCGACTGTGCGATGTGTCGGCTTCGTGTCAGTGAGAGCGTGGCAGTGGGGATTGAGCGGGAGGGCTGGGTTTTTGCTGGTCGTCGGCCCGTGGCCGGGGCATGTCACTGACACGGCAGTGGTACTTCGAGGTTCCTTTGCTGTCCTGGAGCGGTACATCCCCAGATGGCTCACTGCCACGAAGACGGCACATCGCACCCAGCACCACGCCGTACACGAGCGTCACCGTGGGCTACAAGCCCAGCAACTCCCGGCCGATCAGCACCCCGCCGGTCTCCAGACTCACCGCCAGTCAGGCGGGATGTTGGCGACCTGCTTCAGCAGATCCCAGTCGGCTGGCCGCAGTTTCGGTTCGTGCCATTGGGCGCCGTTGGCAACCCAGTAGCCCCGCAACTCACGGACCTGTGACACGTTGTCATCACCGATGCCCGACTCGTTGTAGCAGCACGGGCATATGACGTACTGAGGGACG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //