Array 1 953702-954705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045945.1 Salmonella enterica subsp. enterica serovar Virchow strain AUSMDU00010533 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 953702 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 953763 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 953824 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 953885 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 953946 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 954007 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 954068 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 954129 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 954190 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 954251 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 954312 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 954373 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 954434 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 954495 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 954556 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 954617 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 954678 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970975-973750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045945.1 Salmonella enterica subsp. enterica serovar Virchow strain AUSMDU00010533 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970975 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 971036 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 971097 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 971158 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 971219 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 971280 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 971341 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 971402 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 971463 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 971524 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 971585 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 971646 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 971707 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 971768 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 971829 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 971890 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 971951 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 972012 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 972073 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 972134 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 972195 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 972256 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 972317 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 972378 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 972439 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 972500 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 972561 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 972622 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 972683 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 972744 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 972805 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 972866 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 972927 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 972989 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 973050 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 973111 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 973172 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 973233 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 973294 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 973355 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 973416 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 973477 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 973538 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 973599 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 973660 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 973721 29 93.1 0 A...........T................ | A [973747] ========== ====== ====== ====== ============================= ================================= ================== 46 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //