Array 1 459681-454841 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIU01000001.1 Bifidobacterium pseudocatenulatum strain AM20-9-6.0 AM20-9-6.0.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================= ================== 459680 33 100.0 34 ................................. GTGTCCACCACCGCTTCGGGGGACTGATAGACCA 459613 33 100.0 35 ................................. TAGAAATCTACCGAATTTGGATTTTGCGACTTTCG 459545 33 100.0 35 ................................. AACGGCGTCCGTACTGGCTTTATCCCACTTGGTTT 459477 33 100.0 34 ................................. GCGTATCCACATTGAAACCGGCACCGCTGACTGC 459410 33 100.0 34 ................................. ATATCGGCTATCTGCATGGTCTGCTGGTTGCTGA 459343 33 100.0 33 ................................. TTACCGCCTTGCAGCATGACGCGCCGTCCGCCA 459277 33 100.0 33 ................................. AGTGATTTTAATGATTTGATGACTAAGAATAAT 459211 33 100.0 35 ................................. ACTGAGTGCGCGTAGGTCGGTTGGCTCCCCGTAGT 459143 33 100.0 35 ................................. CGTACTCGCGTTGGGTTTTTCAATGCTACCGCCTT 459075 33 100.0 37 ................................. GCCAATGTAGTGCGCCCAAATGTACCCGTCTGCGATG 459005 33 100.0 33 ................................. GAAAGTGGCGTAACGGTATGGACTGACCCCGAC 458939 33 100.0 35 ................................. GTTTTACGGCGTGTCGTTGTTTTGTTTGTACTATA 458871 33 100.0 34 ................................. TACGCCACCGAAGCGGTGTCCGAGTACGGACTTG 458804 33 100.0 34 ................................. CGCACGCGCGTGTATGCCGTGCTCAAGGGCATGG 458737 33 100.0 35 ................................. AGTGAATTTTACAATACTGTTGACCGTTGGCAGGA 458669 33 100.0 33 ................................. GATGCGGTTGAGGTGCGTTTCGAGCGTAGTGTC 458603 33 100.0 34 ................................. AGCGTTTGATCGGCTTGTACGTCCAGCATGCCGA 458536 33 100.0 36 ................................. TAAACTATGACACCGGACTACCGAAGGCGCGTGAGG 458467 33 100.0 34 ................................. AAACTGCAAAACGGCCTTATCGTCGCGGACGGGC 458400 33 100.0 34 ................................. GCAAAAAGTCTCGATGAATGAGGAAACTTTTTAC 458333 33 100.0 33 ................................. TACAGAACCACCGCGAACAATTTTTCCGAAAAA 458267 33 100.0 34 ................................. GCCGATGATCAACCCAAAGTCGGCCTTGACCTGT 458200 33 100.0 34 ................................. TTTTTCTGCTGGGACGAAATGCTGGAAACCACCA 458133 33 100.0 34 ................................. ACGTACTGGAAACTGCACGAACTCTATGTACGCA 458066 33 100.0 34 ................................. GTGAGCACGGTGCATTTGCCGGTATCAAGTCCTT 457999 33 100.0 34 ................................. ATATACTGATTGATACGTAAGCTTTGCCGCATTT 457932 33 100.0 36 ................................. ACCCCACTGTACAGGCTTACGGCGGCAGTACGCAAT 457863 33 100.0 34 ................................. GATGGCTCCCGTCTTCCAGCCGCCGAGCCAAGAG 457796 33 100.0 32 ................................. TTCTTCTGCTGGGACGAAATGCTCGAAACCTC 457731 33 100.0 35 ................................. TCGCACCTATTATTATTTGAGGAGGACTTTATGAG 457663 33 100.0 35 ................................. GCGCATTTTGTTGAGCACTTGCAAGCGCCGTCCGA 457595 33 100.0 34 ................................. ACCGCCGTGTGCTTGCCGGTGTATTCGCCATGCT 457528 33 100.0 34 ................................. ACCTTCGGGGTGGAGATTGAAATGGAATCCGAAA 457461 33 100.0 34 ................................. GTGCGATTAGGTGGGTGTAGTCGGAGATGATTAC 457394 33 100.0 35 ................................. TTCCGGACATGTCGAGCTGCGCACGTACAATTCAT 457326 33 100.0 33 ................................. CAAAAAGGGAAAATTTTTTAGCTTTACCGTCCG 457260 33 100.0 33 ................................. TGTCCGGCGATGGCACCGATCCGAATCTCAATG 457194 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 457129 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 457064 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 456999 33 100.0 34 ................................. CGCGCCATCAACACGGAATACTCGCCGAGCACCA 456932 33 100.0 35 ................................. ACCCAGCCGGGCGCAGTGCATCGCGGCGAGGTCGA 456864 33 100.0 32 ................................. ATTGCGGCGAACGTTCTGCACGCTCTCCCGTG 456799 33 100.0 35 ................................. GCCGTACGGTCGAGGCCAATGTCAGGGCTTCGCGT 456731 33 100.0 34 ................................. AAGCGGGATTTCTGTGATCTCACCGAGGAACGGG 456664 33 100.0 81 ................................. GCCTCCAGGTCCTGGAAGCCAGAGACGCGCAAGAGCGTGGATTGAAATGACGCGGGCTGGGCCACCAAGGCCGACATCGAC 456550 33 100.0 33 ................................. GTATGCTGCGGGTCCTCGGCCTTCAACGCGCCG 456484 33 97.0 34 ...............T................. GGCTTTGCGTGCGGCAGCTGCGCGGTGTGCCGCG 456417 33 100.0 32 ................................. TCACCAATAATCATCAACCATGTGGCGCATGT 456352 33 100.0 33 ................................. CATTATGCGCGATATACCCTCTATCGGTGCGGA 456286 33 100.0 33 ................................. ATCGAGGTGTGCCGTGAGCTCTCGCATGCCGCT 456220 33 100.0 37 ................................. ACGGTCTGGCCGTTGGTATTGATGCTGGACGTGAAGG 456150 33 100.0 36 ................................. TTAAACACCCTCAACCGCTCTCCATCCCACCAACTG 456081 33 100.0 34 ................................. TGGATTGTAGCGTTTGAGCTTGCTGATTGCCTGA 456014 33 100.0 32 ................................. ATGCGCCACACCTTGTGGTACATCATGCGTTG 455949 33 100.0 35 ................................. ACTGTCCAGCCCTGAAAGCATACGTGCGGGTGCAA 455881 33 100.0 34 ................................. TCGACCTGGACAGTGCCGTAACTGTTGCCCTTAT 455814 33 100.0 33 ................................. CAATCGGATTACCCACTATGCAACCATTTGCAG 455748 33 100.0 36 ................................. AACCTAAATTAGGATCTACTAAGAAGGGTATCGAGA 455679 33 100.0 36 ................................. TTAAACCGATGCGTGATAACAAAGGATCAGATGGAT 455610 33 100.0 35 ................................. TGATTGTCCCGCCATGCCTGACATGCGCGGCGCGT 455542 33 100.0 34 ................................. ACGATCAAGATCACCGACGACGGCCACGTGACCA 455475 33 100.0 35 ................................. AGTTCCATGTCCTGCGTCCGGTCGAGTAGGTCCTG 455407 33 100.0 36 ................................. TGCGCTGCGGTCAGACTGCGGAACTGCTTGAGTCGT 455338 33 100.0 32 ................................. GTGCTTGACCTCGACCCATTGCAGCAGCTCGA 455273 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 455205 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 455138 33 97.0 33 .............................G... AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 455072 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 455006 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 454940 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 454873 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================================================= ================== 72 33 99.9 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATAATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAACGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //