Array 1 22347-22769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000012.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 22347 29 100.0 36 ............................. AAAGGAATAGATGCAATCAAAAAATTAGGTGGCACA 22412 29 100.0 37 ............................. AAAGGATTTAATGAGGTTCAAATAACAACTAGTGATT 22478 29 100.0 37 ............................. TTAGCTGTGCTATGCATAGTACTCATAATTTCATTAA 22544 29 100.0 37 ............................. TTAGCTGTGCTATGCATAGTACTCATAATTTCATTAA 22610 29 100.0 36 ............................. AAAGAAGAACGAATAAAAATTGAAACTAATGTAAGT 22675 29 96.6 37 ...............A............. GTCGGACTTATTATCATAGATATCCCTTTTGCCAAAA 22741 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : AATTGTTTTAAATTGATTAAGTACATCTGTTGATTTATATTATATTAACTATGTATTGTACAATTAAATTAAAAAATATATTTGAGTTAGAGAGGTAGTATTTTATGTCGTTATTTGGAAGTAAAATTACAAAAGAAGAAAAAGAGAAAAATCGAGAAGAAACTGCAAAGTATTATGAAAGACTTAAAAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAATTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGAAATGGTCTTATTAAGGCAGGTATGGCTTTAAGCTTTACTGATGCAAAGGAACAAGCAAAAATAGGATACCTTAGTGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGCTGAATACCAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATAGCAATACAGACACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60554-61828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000003.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 60554 29 100.0 37 ............................. TTATACATACTACTACAAGCAACTCTAACATTTGTTG 60620 29 100.0 37 ............................. TTTTTCAAGCATTGCAACTACTTCGATTGGATTTTTT 60686 29 100.0 35 ............................. CTGATTATCACAGGAGGTATAGGCTTAGCAACTTC 60750 29 100.0 37 ............................. ATTTTTATTGCAGTTTATAATTGGTATGGTGTTAATG 60816 29 100.0 37 ............................. TTAAACAAAAGGTTGGCATTGGCAATTTATAGTTTTT 60882 29 100.0 38 ............................. ATCTATTTCTTGTGTTTTTCTTACTTCTTCATTTTCTT 60949 29 100.0 36 ............................. GTCATTGCCCTTGCTCCAGAAGTTATTAGTGCTATT 61014 29 100.0 37 ............................. CCAGTAGACACTATTCCTACTGTTGGCATTGATTTTA 61080 29 100.0 36 ............................. AAGTTATTAGTTTAATAGCGTCAACTTTAGTTTGTG 61145 29 100.0 36 ............................. TTGAAAAATTTTACTTCAAATCTTTTTATATCCTCT 61210 29 100.0 37 ............................. AGGTAACTGACATAACAAAATTGGATAAAGATACATC 61276 29 100.0 37 ............................. AGAGGCTTGTATAACTTTTTTACAATTATTACAAAAC 61342 29 100.0 35 ............................. ATTATATCTGTACACAAAAAAGTTAGTGGATATGC 61406 29 100.0 37 ............................. CCAGTTACAGCAACTCCGAGTGTCTTGTCTGAGTCAG 61472 29 100.0 37 ............................. CGCAAAAGGATTACCTAATGTACTAGCTATATTGTTT 61538 29 100.0 36 ............................. TATATTGCAATTATTTCTCCATCTTGGTCAAAGATT 61603 29 100.0 37 ............................. TTAAATTACACTCATGTCTATTCCTATGCACTCTATA 61669 29 100.0 37 ............................. CTATTTACACCTTTACTTTTCAAATTGTCTTTAAAAG 61735 29 96.6 37 ...............A............. TTTCTAACATCATCATTAAATCTTTTTTGTTGTTCAT 61801 28 86.2 0 ....................-..TC...C | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAAATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAGATGAAGAATTAGTATCATATCATGATGTAAACCCAAATCCAGAGCCAAATAAGCATTATAATAGAGATGTTGATGATGTTAATATTATATTCGTTCCATCAGAGAATAATCCTTTTGACAATGATATAGATGGAATAAATTAAACATAAATATTTATTATAATGAGCTAAACTACAAATTGATATAAATATTCAAAAATAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGGCAAATTAGGGGTTAACAGTTGCAATGTAAGGCATTGAGAACATATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATACTTGGTTTATTTTAGG # Right flank : CTTAATAAACAAAGAAAGCACTTACTTTATTGTAGGTGCTTTTGTTTTGCTCAAATTTGGTCGGTTGAGTAAAGTAATTAGAAAAAAATGGTAGAGACCTATTGAATTATTGTACGTACTGTATTATAATTTAAGTACGGACAATAAAAAGAGAGGTGATTAGATGTCCAGTAAATTAGGCAGACCAGCAAAAAAAGACTCTAAAAAACTGAGATTTGAAGTTAGACTTAATCAAGAACAAGCTGATATATTAAATGAGTGTGCTGAAAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGATTTTACTATGAATGAGTTAATGAATTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 307207-306458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000002.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 307206 29 100.0 38 ............................. CTAAAAAAGCAAAGAAATTGAGAACGAAATTTTATATA 307139 29 100.0 37 ............................. TAATTAGTAACATCAGCGTATGCAAGTCTTTTTTCAT 307073 29 100.0 36 ............................. TTATTTTGATTCTTATTCTTAGTAACACTTGTTTTA 307008 29 100.0 38 ............................. AAAGAAGGTGAGGGTGATTTGGTTGTTCCAGATGACTC 306941 29 100.0 37 ............................. ATTTTTAAAATTTCTACCAATCAGGATTTTTATAAAA 306875 29 100.0 36 ............................. TTTGTTATAAGAATATCACCACCTTCCTTTTCTGGT 306810 29 100.0 32 ............................. CTTTCTTTCTTTTATCGTAAGACTTAGCTAGT 306749 29 100.0 37 ............................. TAGAGACTTTAAAAAATAATAAAGTAAGAATTGTATC 306683 29 100.0 38 ............................. TCAACTCTGTAAATAAGTTGTCTAATGCTTCTTTTGTA 306616 29 100.0 36 ............................. GTAACATGGGAAGTAAGCTATTATACTTCTTTGAAT 306551 29 96.6 36 ........................C.... TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 306486 29 79.3 0 ..............G.A.AA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTAATAATTATTCTCAATTGCACTACTGTTCGCTCACTGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTATTCAATTAGACCTATTTTGGG # Right flank : AAAACATACATATTCTATAAATAATAATAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATCTGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAGATAACTACAATACTGTTAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATACACTTAAAGAATATAAAAATCTAAGCTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATATCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGAATTTAAAGAATATATAATGGAATATAGTAAATAACTTTAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17275-16789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000009.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 17274 29 100.0 37 ............................. GTATTTGCACATGCTACGCCTGTATTACCAGATCCAA 17208 29 100.0 37 ............................. CATTGTAAAATTCTTACTTCTTGTTTTTTAGTTAAGG 17142 29 100.0 37 ............................. GCTATTTCGTCTTGTAACTTAAATTCAGTACTTGCAG 17076 29 96.6 37 A............................ ACCTCGATAGAGTAATATTTTTGCTGAATTGGGCTAT 17010 29 93.1 36 A...........................A TATTTAAATACTTGACTAATTACCTGTTCTCCACTA 16945 29 96.6 37 A............................ GGTATTTTATTTAACAAGTCAACAAGCTTATTCACTC 16879 29 89.7 34 A..............A............T GAGAAAGTTGTACTGGAGTGAATGGGATATAAAG 16816 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 95.7 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TGAGAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATGATATTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTAATAATATTTATATTGAAAAGAGAAAAGAAGAATATAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTCTGAGAAAAAATTAGAGAAAAATAAGTAAAATAATATGGATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTAAGCGATTTTTCTACTCAAGTATGCTTTAACAGTTGAAATACAAGGTACTGAGAAGGTTTGATAAGTGTTATCAATTGCACGACTATCCGCACACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTTAAATAGTAGGTGCTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACGTATATAGTATAATAATCTTATAAAATTATATTGGGGGATATTGTACTATGAACGATACATTAGAATATATATTTTGTAGTGAATGTGGCACGAAATGTCTGAAAGAAAGTAAATTTTGCAGTCAATGTGGAACAAAAATATTTGATATAAAAATTGCAGATGAAAGTATCATTGAAGAAAAAGAATATGATTTAAAAGGTGTTAATTTACAACATGTAATGCAGGAAACAAGTTTTATAAAAGCATCCTCTATCAGAAGGTTGAAGGAATTAACTGGAATAGATTTAGAAGACTGTAGAAAAATACTTGAAGAACCATATCGAAAGTATTATAATGAAAATTCTGACATACTTGAAGAAAAAAGAAAAAAAGAAGATGATATGTCTAAAATTAGAAGAGCTAAAGAGGAAAAAATAGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 19975-19042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000009.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 19974 29 100.0 36 ............................. CCATTATACATTGTTTCAAGCTTCTTTTGTACTTCT 19909 29 96.6 37 A............................ TTAAATGTCCATTCTAATTGAATATCTGTAAATAATC 19843 29 96.6 36 A............................ CCTTTTTACAAAGTACACCAATTAGGAAATATTTTA 19778 29 96.6 37 A............................ AGATTATTAAGCGGATTTTGTTTATTCTACAAATCAT 19712 29 93.1 37 A..............A............. GCAAAAGCACTTTCAAACTCAATAGCTGATTTTGCAC 19646 29 89.7 92 A............A..............T TCAAATATAAAAGACTTTACATCTTTGCCATCGATTGGTTAAATGGCATGTAAGTCAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 19525 29 96.6 36 .............A............... CAATTCTATAAAAATGCTTTTGGGAGGATAAAACGT 19460 29 93.1 36 A..............A............. AATAAAGTTTTAAGTTGTCTCAAATCATTTTTTATT 19395 29 100.0 35 ............................. ATTATTTATGGAGTGGTGGCAGCAATTGCGATATA 19331 29 100.0 36 ............................. GAGGTTTTATCTTTAAAATTAAATTTTATCTATTTA 19266 29 100.0 37 ............................. GCTTATACTTCTCAAATATGTTCAGAATGTGGTCATG 19200 29 93.1 37 A..............A............. TATAATGAAAACTTAATAGATGAGATAGTATTAAGTA 19134 29 96.6 36 ...............A............. AGAGAATAAAAAGAATAACACACTACACAATACTTG 19069 28 82.8 0 A...................-..TC...A | ========== ====== ====== ====== ============================= ============================================================================================ ================== 14 29 95.3 41 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATACAAGGTGAGAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTAATTTATTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAATCAGAAGAAAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTCTGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGTTCGATTTTTATGTTTAAGTATGGTTTAACAATTGGAATACAAGGCATTGATAAGGGTTGATAAGTGTTATCAATTGCAAGACTATCCGCACACTGCAAATTTGAGAGAGTTTTATGTGTGTAGGTATTGAAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAGAAAAAGAAAGCACTTACTTTTGTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAGTAATTAGAAAAAATTGGATATTTAATTGACTTTTGTTGCTACATAAATTATAATATAATTGTAGCAACAAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGATAAAGATACTATTGATAAGTTAGATGAATGTGTAAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTCCCACAAAGAAGTTAGTACTTCTATATGAAATATTCTATCATATAGAGAAACTTCTTTCAAACTAATTTGAGGAGGAATTTATATGAAAACTAATTTAGAATTAATCAAATCAGAAAAT # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 53661-52849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWD010000009.1 Clostridioides sp. ES-S-0123-01 CD-ESS012301gDNAQiagen-xx-EN-USA-2019-093-JS_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 53660 29 96.6 36 ...........................G. CACCAACTCAAAGGTTTATGTATCATTAACAATGCA 53595 29 96.6 35 ...........................G. TAATAGAATCATTAACTCCATGAGTCCATAACCAA 53531 29 96.6 36 ...........................G. ATTACTATTCACACTTTCTTGTATTCTTAATTTTTC 53466 29 96.6 36 ...........................G. ATAAGAGTAGTTCAAAATAATTAATTTTTAATCTGA 53401 29 96.6 36 ...........................G. ATTTATAAAAGAATAAAGGAATTAAGAAAAGATGTA 53336 29 100.0 36 ............................. TAACACAAAAAGTCTTAAAATTACAGGGTTAAACTA 53271 29 100.0 36 ............................. TAAAAACACCTACTTACAATACAATTCTCTTAACTT 53206 29 100.0 37 ............................. AAATATGAATAATTCTCACTAGATTCAGCGATTATTA 53140 29 100.0 37 ............................. GCAAATACTTATAACGGATATGAAACTGGTAAAAGAA 53074 29 100.0 36 ............................. GTTTTTATATTGTAACTATTTGTAGAGTATATTATA 53009 29 100.0 35 ............................. AGATCAATTGCTAAGTTTTTTCTTTTTTTCTTCTG 52945 29 100.0 37 ............................. ATTGATTCTTTTGGAAATGAAGGTGATGTCATTCATT 52879 29 86.2 0 ...............A....A..T....A | AG [52857] ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.6 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTATTATTGTTTATAGTAGATTTTATTTCAATTAAATGTTTTTCAGCATCTTTTTTCTTTTCATAACTTCCATAACTTTTTTGTTTCTTTTTCCCAGTTTCTTCTTCCACATACTCCACATATACATGAAATTTTTCACTTCTTTTTCTTATGAAGGCTGACTTAATATCCATAAGAGCACCATCCTTTGAGTTGATTTAAGTTGATTACTTAATTATATTTTATAACAAGTAAAAAAAAATTTCAGAGTTTATTAAAAAATATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATATAAGGCATCGAGAAGGTCTGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTGAGAGGGTTTTATGTGTGTAAGTATTGAAAATACTCAACTTATTTTGGG # Right flank : AGTTACAATGAGTAGAAGAAGATTTCTATTTATCGTAACTTTTTTGTTGCAAATTTAAAATTATAATAGATTATAAAAATTATTATAAAAAGATAGTTTTATAAAAAAATATAATAAAAAACTCGATTAATAATATATATTAATGGAAAAAACTTCCAACTGTCTACAAAATTCGATTTTTTTATTACAATTACGCTTTTTTTATTGCATTAACAAATCAAAAGTATTATTATGTAAGTAAGATAATTATTAAACACAATTCTGAATAGTCTGATTTGAAAGTTACAAAACCTAAAGGTTACAAAGGGTATACATAGGCATGATTTATTAAATATTACAGGGGATTTATAACTAAAATGCGAACGTAAGTTTGTTACATGAGGGGGTAGTTGTGTGGATGAATCAAATAAACTAATACTAGAATTGAATAATATTTTTAGTGAATTAGAAAGTGTTAATGCATATAAATTTGATGAATATAAAGAAATTATTAAAAACTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //