Array 1 1282-2758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSL01000089.1 Salmonella enterica strain CVM 43820 43820_contig_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1282 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1343 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1405 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1466 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1527 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1588 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1649 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1710 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1771 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1832 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1893 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1954 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2015 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2077 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2180 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2241 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2302 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2363 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2424 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2485 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2546 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2607 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2668 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2729 29 96.6 0 A............................ | A [2755] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1125-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSL01000103.1 Salmonella enterica strain CVM 43820 43820_contig_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1124 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 1063 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1002 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 941 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 880 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 819 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 758 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 697 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 636 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 575 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 514 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 392 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 331 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 270 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 209 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 148 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 87 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //