Array 1 6772-6571 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815113.1 Prevotella sp. HMSC073D09 Scaffold1996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 6771 47 100.0 30 ............................................... AAATCACTAGCTTGAATCTCAACATGGTCA 6694 47 100.0 30 ............................................... ATACTGATGCCACAATTGTGAATAAGGTAA 6617 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTATGTGGGTTTGATAGTATTGAATCGCTAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTCTTCAGACATATCGGATACTTTTTCAATAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACGCGAACAGAATTATACTTCTGGGCGAACCGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTGTAGTATTATCATGCCAGAAACAAGCATCGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGTACATTTGCAGTATCGCCAACAACAAAGTGACCAGTAGAGCCATCGGGTTGCAA # Right flank : CAAGCAGACGAACAGAATTATTTTTTTGAGGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGTACATTTGCAGTATCGCCAACAACTTAAATACCATATCTATTTGTACTACAAACAGATACGAAGATTTAAGAAATAAAAAAAATGAGACTGCAAAAAGAAATCCCACTCGCATGGAGTGGGATTTCTTCTTTCTAATAATATATATGTATGTTAGAACAATTCCAGCTGTTGCCCAGGTGCGTTAGGCTTATGAGGTTTAGTGCCATAAAAGAGCTGAATGTTGTCGAATTGCTTATCTGTTATACACAAAACACCAACCTTGCCATACTTGGGGAGCGACTTTTTCACCCGTTTGATATGCACTTCCGCATTCTCCATGCTAGCACAATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.42%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 7349-6995 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815113.1 Prevotella sp. HMSC073D09 Scaffold1996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7348 47 100.0 30 ............................................... AAAAAATCACGCTGTTCAGGCAACAAATTA 7271 47 100.0 30 ............................................... TTATGTGGGTTTGATAGTATTGAATCGCTA 7194 47 100.0 30 ............................................... TCTTCAGACATATCGGATACTTTTTCAATA 7117 47 100.0 29 ............................................... GCGAACAGAATTATACTTCTGGGCGAACC 7041 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNCTCGTACATTTGCAGTATCGCCAACAACATAAAAATGTACTCTGTTGAAGTTCCACAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTGTACTCGTCCAATACCACCGGCACGTCGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACATAAAATGAAAAAACTATATTTGCAATAAAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTCTGTCTTTAAAATTGGTGCATTGATTGGGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGTACATTTGCAGTATCGCCAACAACCGCGGCTCTAAGATATTGTACGTTGAGTA # Right flank : TGTAGTATTATCATGCCAGAAACAAGCATCGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGTACATTTGCAGTATCGCCAACAACAAAGTGACCAGTAGAGCCATCGGGTTGCAAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACAAATCACTAGCTTGAATCTCAACATGGTCAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACATACTGATGCCACAATTGTGAATAAGGTAAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACCAAGCAGACGAACAGAATTATTTTTTTGAGGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.22%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 7771-7571 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815113.1 Prevotella sp. HMSC073D09 Scaffold1996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7770 47 100.0 29 ............................................... TTGTACTCGTCCAATACCACCGGCACGTC 7694 47 100.0 30 ............................................... ATAAAATGAAAAAACTATATTTGCAATAAA 7617 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTCGTACATTTGCAGTATCGCCAACAACCGACCTCTTTTGCATTCTTGTCCGCATCAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACCGTAAATGGCTAGTAGCTTTGTCGTATAAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACAATGAAGTATCTGAGTTGCGAAACGGACGTGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTACATTTGCAGTATCGCCAACAACATAAAAATGTACTCTGTTGAAGTTCCACA # Right flank : TTCTGTCTTTAAAATTGGTGCATTGATTGGGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGTACATTTGCAGTATCGCCAACAACCGCGGCTCTAAGATATTGTACGTTGAGTAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACAAAAAATCACGCTGTTCAGGCAACAAATTAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTATGTGGGTTTGATAGTATTGAATCGCTAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTCTTCAGACATATCGGATACTTTTTCAATAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 8382-7990 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815113.1 Prevotella sp. HMSC073D09 Scaffold1996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ===================================================================== ================== 8381 47 93.6 30 ..C...G.................................A...... TATAAGGCGGTTTTTGCAAACGAAACTACC 8304 47 66.0 69 ...............................NNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 8188 47 68.1 29 NNNNNNNNNNNNNNN................................ CGACCTCTTTTGCATTCTTGTCCGCATCA 8112 47 100.0 29 ............................................... CGTAAATGGCTAGTAGCTTTGTCGTATAA 8036 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ===================================================================== ================== 5 47 85.5 40 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : TTGGCGGACGCTGTGAAACGGAGTCGAGTGGCGGAATTACTTTCGAAACAATGATTCCCTATGCACAGGCCGGTGTGGACTTCATCTCTTTTGGGGCACTTACACACAGCGTTAAGGGGCTAGATATGAGCTTTAAGGCTGCGGGTAAGTAGTCGCACCACCGCTCTTCTACCTACGTTTTTTATCGCTATAAACAATAGGCGGCCATCATTAGAAGAACATGGCTGCTAGGCTATTGGGTGCCGTGAGGTAAACTAAGTGAGTGGATGTCGTGACGTTATGCTGTATCGCAAACAACCTAACAGCTAATGGTTCCCTTTCACAAAGCGGAAAGGAGCGTGTCATACTTGTATGACTGAAAGAATAAGTTGCTAACGTATGGGGTAAAACAAAACGTTAGACTCATTCAGCCTAACGTTATCGGAGGTTCCGAAGACGGCAAGCCGGCTCTCCGATACCATTGCAAAGATACAACTTTATTCGTCACCACCAAACTTTTA # Right flank : AATGAAGTATCTGAGTTGCGAAACGGACGTGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTACATTTGCAGTATCGCCAACAACATAAAAATGTACTCTGTTGAAGTTCCACAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTGTACTCGTCCAATACCACCGGCACGTCGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACATAAAATGAAAAAACTATATTTGCAATAAAGTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAACTTCTGTCTTTAAAATTGGTGCATTGATTGGGTTGTGATTTGCTTGAAAACTCGTACATTTGCNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 4.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.69, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //