Array 1 9709-8395 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCG01000119.1 Salmonella enterica subsp. enterica serovar Oslo strain 2009K0417 NODE_119_length_9737_cov_3.73536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9708 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 9646 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 9585 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 9524 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 9463 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 9402 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 9341 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 9280 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 9219 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 9158 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 9097 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 9036 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 8975 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 8914 29 96.6 32 .................T........... TCATTCAGCGAACGCAGGAGAACCAGCCGCCG 8853 29 100.0 32 ............................. TTCGGGAATTTATTCAGCCAGACGACAGCCGA 8792 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 8730 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 8669 29 100.0 33 ............................. ACCGCTTTGTCGAACTCTCCGAACTGCGCCAGC 8607 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 8546 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 8485 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 8424 29 100.0 0 ............................. | A [8397] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTAACCAGCTCAATAAAAACCAGGTG # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15690-17182 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCG01000086.1 Salmonella enterica subsp. enterica serovar Oslo strain 2009K0417 NODE_86_length_17224_cov_3.8992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15690 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 15751 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 15812 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 15873 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 15934 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 15995 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 16056 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 16117 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 16178 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 16239 29 96.6 32 .................C........... TCCAGTGTTTATTTTAGACTCGCAACAATTAA 16300 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 16361 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 16422 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 16483 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 16544 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 16605 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 16666 29 100.0 32 ............................. CGGTTCCATTGACCCGCGCTGCGGGCTGTCCT 16727 29 100.0 32 ............................. CACGTTTCCTGCCTAATAAATGGATGATGTCG 16788 29 100.0 32 ............................. GACAGTGCCCTGCTGTTGGGCGGTGTCAGCAC 16849 29 100.0 32 ............................. CGTGGAACTTTATCCGCACAGATTTCCTGCGC 16910 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 16971 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 17032 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 17093 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 17154 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GGAAACGCATATGAGCACACAAACAACCGGCAGTGTTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7409-8534 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCG01000122.1 Salmonella enterica subsp. enterica serovar Oslo strain 2009K0417 NODE_122_length_9157_cov_3.7943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7409 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 7470 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 7531 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 7592 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 7653 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 7714 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 7775 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 7836 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 7897 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 7958 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 8019 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 8080 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 8141 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 8202 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 8263 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 8324 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 8385 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 8446 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 8507 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //