Array 1 213350-211246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJYZ010000006.1 Salmonella enterica strain 20REF-627 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213349 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 213288 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 213227 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 213166 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 213105 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 213044 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 212983 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 212922 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 212861 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 212800 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 212739 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 212678 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 212617 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 212556 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 212495 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 212434 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 212373 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 212312 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 212251 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 212190 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 212129 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 212068 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 212007 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 211946 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 211885 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 211824 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 211763 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 211702 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 211641 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 211580 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 211519 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211458 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 211397 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 211336 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 211275 29 100.0 0 ............................. | A [211248] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 231879-230021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJYZ010000006.1 Salmonella enterica strain 20REF-627 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231878 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 231817 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 231756 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 231695 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 231634 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 231573 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 231512 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 231451 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 231390 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 231329 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 231268 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 231207 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 231146 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 231085 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 231024 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 230963 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 230902 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 230841 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 230780 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 230719 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 230658 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 230597 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 230536 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 230475 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 230414 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 230353 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 230292 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 230231 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 230170 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 230109 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 230048 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //