Array 1 118785-117137 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIM01000012.1 Escherichia coli isolate 370D, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118784 28 100.0 32 ............................ GGGTCGAAACCGCCCCACACTTCCCCGCCGTA 118724 28 100.0 32 ............................ GTGAAGCGCTGGCGACGCTGCCAGACGTTGCG 118664 28 100.0 32 ............................ ACGATCAGGAGGAAGATCCGCAGCCGGTATTG 118604 28 100.0 32 ............................ TTGCACGCGATCGGCAATTGAGGAAGCATTTT 118544 28 100.0 32 ............................ TTCGCCTACATGTGGGAAAGCAACAAACTGAA 118484 28 100.0 32 ............................ AAACATTGCGCGTTGGATCGGTATTGTCACCG 118424 28 100.0 32 ............................ AATTGCCAGCGGGCATTCAGTCGGGCGCGCCT 118364 28 100.0 32 ............................ GCACGAGCTGCGCCCGGATTTGTACCCGAATC 118304 28 100.0 32 ............................ AACTTCTCCGCATAGGGCGCAAAATCTTCAGA 118244 28 100.0 32 ............................ CAGTAGATCGTCCGGGCGACCGACAAACGTCG 118184 28 100.0 32 ............................ ATGCTGGGGTTACATCTAACCAGTCAGCAATT 118124 28 100.0 32 ............................ GTAATCCAGCCAGGCTGGGGAGACGCTGAGGT 118064 28 100.0 32 ............................ ATCAATTGAAAACACGCCGTTACCGTGGTTTT 118004 28 100.0 32 ............................ GCCACGCCGTGCGCATCAACAGATATACGCAT 117944 28 100.0 32 ............................ AGAGCAGGGCAGAGACTTCCGGTGCCAGCAGG 117884 28 96.4 32 .............T.............. ATTCAAGGGGCGCGTCCATCGCTATAACATCA 117824 28 100.0 32 ............................ CGTTGCGGTCCGTAACTTTTATGTCGGCTGGA 117764 28 100.0 32 ............................ GGCAACCGGGCACTGATAGTCCACGTGACGTG 117704 28 100.0 32 ............................ TTTATCAGAGTCACTCTATAAGTTGAACGATT 117644 28 100.0 32 ............................ AGATATAGTCCGGGATTGAGAAGGCGCGCCCC 117584 28 100.0 32 ............................ CAACTTGCCCGACGGCCAGGCAACACACGTTT 117524 28 100.0 32 ............................ TCCAAATCAGCAACCGCGTCCATCACATCAGA 117464 28 100.0 33 ............................ TTGGAGAAATACCCGGAATATGCTGAAGAATCA 117403 28 100.0 32 ............................ ATCATCGCGTACGGACGAGGAGTAACAACGGT 117343 28 100.0 32 ............................ CACTGCATTTGCTGCACGTTTTCGAAACCGGC 117283 28 100.0 32 ............................ ACGCTGGCTTACTGAAGCTCGTAAATTTATCG 117223 28 96.4 31 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTCCAGC 117164 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTATGTGCTCCGTGACTGACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTATTTCTGTTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTGGAATATTTATTCCCCGTAACTCTCAGACGCAAAAAAGGTCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128293-127844 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIM01000012.1 Escherichia coli isolate 370D, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 128292 28 100.0 32 ............................ CGGTAGCTTGGCCGCAGTCTCTGCCCCGATCT 128232 28 100.0 32 ............................ AACAGGCAATTCAACATCATCTCACAGATTAA 128172 28 100.0 32 ............................ TAATCGCTGGATGACGTCAATGAACCGCGAAG 128112 28 100.0 32 ............................ GATCGCGGCGTTGGCGTGTCCGGCCTGGGCCG 128052 28 96.4 32 ..........A................. TGATGCGAAACAACAAATAGATTCAGCGTCAA 127992 28 96.4 32 ........T................... GACTGCGTTGCTGTAACGCGTGATGAGTAGGC 127932 28 100.0 32 ............................ GTGAATGCCGATCGTTGAATGTCAGGCGAGTT 127872 28 85.7 0 .................T..T...C..T | C [127848] ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTAATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGGCAGCAGGAAAATGAGATGATTTTTCTTTATTAACAACGAGCTAAACGTGTTGTATTTGA # Right flank : ACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTCACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACTTCCGTTACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTGGATGTTGATGCCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60023-59750 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIM01000001.1 Escherichia coli isolate 370D, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60022 29 96.6 32 .............T............... ACGACGCGTCTTTTAGCCCCATGCTCTGGAGT 59961 29 100.0 32 ............................. TCAGCGACAACGTCGCCAGGACGACTACTGCT 59900 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 59839 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 59778 28 79.3 0 .A..........T.........-.CT..C | C [59769] ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGTGGTGCAGAGGGCCAGCAAGAAGCTCCGTTGCTGGAAAAAGATGATTATCCCTGGCTGACGCATGTCACGAAATCCGATGTGCATTCGCACCGGGTAGCGACGCGCAAAGACGTTGAGCGCAGCGTGAGTGTGGGTTGGCTTCATAGCGAACAAGAGTGTATTGCGCGTATCGAATCGGCGGTAAGTCAGGGGAAATGTATCGCCTGGATTCGGAATTCTGTCGATGACGCCATCTAGGTTCATCGTCAGTTACTTGCCCGCGGCGTCATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGCGATCGCCAGCGAATTGAAACGGAGACGCTGGCACGCTTTGGTAAAGAAGACTGTTCACAGCGTGCCGGAAAAGTCCTCATTTGTACTCAGGTCTTAGAGTCGAGCGTTGATTTCGATATGGACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCGGGGCGATTAC # Right flank : AGCTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCAGTATCGCTCATGCGTTT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79290-79078 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIM01000001.1 Escherichia coli isolate 370D, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79289 29 100.0 32 ............................. ATCATAGTCAGCCATTAATGCCTGACGAGTAC 79228 29 100.0 32 ............................. CTGGGGCAGGCGACAGGAACGCAGTCTGAACC 79167 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 79106 29 93.1 0 ....................A.......A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTAAACTAATCATTATCATTCTCTATAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGAATTAAGCAACATATCCACGTAACACCTCATGTTAAAAATAGCTCTCCATATATGAAAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATATTTGTTAATTTTTTCTTTAGGGTAATGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //