Array 1 57120-55118 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTM01000004.1 Ligilactobacillus salivarius strain NT15_1 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 57119 36 100.0 30 .................................... TGCCTTGCGACCAGAAAAAGCAACCCCACA 57053 36 100.0 30 .................................... ATCACTTTATTTCCGATAACTGATAAACGT 56987 36 100.0 30 .................................... TGTCTGTCCATTGCTTGTATCCTCCGTTAG 56921 36 100.0 30 .................................... TGAACTTATACATTTGAATAGTATTGCCTT 56855 36 100.0 30 .................................... AAGAACGTTTATCTTTGGTGGGCAAGATCA 56789 36 100.0 30 .................................... AGCAATGCAAGCGGTAATGCAATTCGTTTA 56723 36 100.0 30 .................................... GCTGCATAAATTACATTACACAATGCCACT 56657 36 100.0 30 .................................... CAGCGATATCGCGAACAATGATGATGGTTT 56591 36 100.0 30 .................................... TGTTTCTTAAGCAGTCTTGCCATCTCTCGT 56525 36 100.0 30 .................................... TGCTCAAGGAGTTATCGTTAAAGCCACACA 56459 36 100.0 30 .................................... CAGTTATGACCGTAAGTTGTTAATCCCCGC 56393 36 100.0 30 .................................... AAAAACGGTAGTTAAAAATCTGAATCTTGA 56327 36 97.2 30 A................................... CAATCATAGATTTTATAAAAACATTGTTAA 56261 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 56195 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 56129 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 56063 36 100.0 30 .................................... AGATGTTTTAACGTTTATCAACTACAACAG 55997 36 100.0 30 .................................... ACGAAAACCTATCGAAGTGCTAAGCAGTTA 55931 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 55865 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 55799 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 55733 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 55667 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 55601 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 55535 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 55469 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 55403 36 86.1 29 ..........T.........T...A......G.C.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC T [55369] 55337 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 55219 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 55153 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 30 36 98.1 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //