Array 1 1855305-1854676 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQC01000001.1 Moraxella lacunata strain NCTC7911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1855304 28 100.0 32 ............................ TAAATCAAAACAAACCACGCTATCGGCGGATG 1855244 28 100.0 33 ............................ CTGAGCATAAGGTTTATGCCGATATAGATGGAT 1855183 28 100.0 32 ............................ ACATAAATATTAAAGTGGCTATAACTTGTAAC 1855123 28 100.0 33 ............................ CACAACCACAGCCAAGCCCACAGCCAAGCCCAA 1855062 28 100.0 32 ............................ ACATAAATATTAAAGTGGCTATAACTTGTAAC 1855002 28 100.0 32 ............................ TCAGACGTCAAGACCCCATGTTACAAGTAAGG 1854942 28 100.0 32 ............................ ATTTTTATCGCCTTATATTTTGGCTATTCTTA 1854882 28 100.0 32 ............................ TGCTAGGGCAATGGCATCATCGCCTGTTAATG 1854822 28 100.0 32 ............................ AAATCAAAAATTTTGAAAAAAGGTATTGGCAA 1854762 28 96.4 32 ...........T................ ACTCTCGGCATTGGCGACCCACTTGGTATTTT 1854702 27 82.1 0 .C........A..C......T...-... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.0 32 GTTCCTTATCGCATAGATAACTTAGAAA # Left flank : GTTTGGCGGGTGTGCCGTATATCGTGGTGCTAACCAATCCTGTCTATGGTGGGGTAACCGCAAGCCTTGCCATGCTGGGCGATGTGCATATCAGTGAGCCAAAGGCAATGATTGGCTTTGCAGGTAAGCGTGTGATTGAGCAGACCGTGCGTGAAGTGCTTGATGAGCCGTTCCAACGTGCCGAATTTTTGCTAGACAAAGGTGCAGTGGATATGGTGGTACACCGCCATGAGCTTGTGGATACGGTGTATCGACTGCTTACCAAGATGATGAAATTGCCGAATGTGGGTTGATTTTATAAACCGTCCTTTGGGGCGGTTTTTTGTCGCCAAAATTTATGCTAAAATGCGAATTGGTAAAGGTTTATGCCCTTTATTTTTTGATTATTTAAAAACTTAATAAAAATCAACCATTTATAAAAAGGCGAAAAACCATTGGGTAAATGCCTAAAAATTGGTTCTACGCCTTGATATAAATGGGTTTTATGTTGTATAATTCTA # Right flank : CCACAAAACCACCCCAAAATTCCATTTGAAAAAATCCCCAAAATCATGCACAATACCTCAAATTTTTAACACCAAAAACACCCATGAACACCCCCCAAACCATCTCCGAATGGCTCAATTATATGGGCAATATTCACGTCTCCGCCATTGATATGGGGCTTGACCGTGTGCTACCTGTCGCCCAAGCGTTGGGCGTATTAAAAGACGACTTGCCACACCGCCCTTATGTGTTCACAGTCGCAGGCACCAATGGCAAAGGGTCGACTACCGCTCTCATCAGCGAGATTTGCACCCAAGCTGGCTACAAAACCGCCCTGTATCAATCGCCCCATTTAGTTAGTTTTAACGAACGCATTAAAATCAATGGGACAGATATTAATGATGAATTATTGATAAAAGCCTTTAACGCCTGTGAAAAAGCACGCACGGACTGCCATGTTTCTTTATCATTTTTTGAAATGACGACATTATCGGCATTTTGGATTTTTAAAGAATTAAAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTATCGCATAGATAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1974113-1972548 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQC01000001.1 Moraxella lacunata strain NCTC7911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1974112 36 100.0 26 .................................... TTTTGCCTTTCTAACAGGGGGTTTGG 1974050 36 100.0 28 .................................... TGGCTAACCGCTAACCTACCGCCCAAAC 1973986 36 100.0 28 .................................... AATACGGTAATTATCAGAAGTCACCCGA 1973922 36 100.0 28 .................................... GTTACGTGATTGCTGTCATTGAGCTGTA 1973858 36 100.0 27 .................................... GAGAGACGTTAACCCCGTGAATATTTG 1973795 36 100.0 28 .................................... TGTGTGTTGCATGACCTGACATCAACGA 1973731 36 100.0 28 .................................... ATACCAGCCATAATATCTATTCCCCATT 1973667 36 100.0 28 .................................... ATAAAAAGGATTGTCCGCATTTACTTGA 1973603 36 100.0 29 .................................... TCACTTGTTCTTGTTGGCTGTGCATAATG 1973538 36 100.0 28 .................................... ACAAGACCGATAGGGGGCTTGTAGATGC 1973474 36 100.0 28 .................................... AAAGGTATGTTAAATGAAAGTTAAAGAA 1973410 36 100.0 26 .................................... TTCTGTCCGTCTAGGCGGTCTTGTAC 1973348 36 100.0 27 .................................... GCGGAAAGGTCTTATATTACTTTGCCC 1973285 36 100.0 27 .................................... GCAGCCACAATAAATCATTAATCATAA 1973222 36 100.0 29 .................................... AGCTTCAAACCGTTTTCGCTAACGCCAAA 1973157 36 100.0 29 .................................... GATAAGCTCTGCCGTATGCTCGCTTGTTG 1973092 36 100.0 27 .................................... TGAAGTATACGTGTCATCTGATAATCC 1973029 36 100.0 26 .................................... ATGTGCTTTATCATCGCTTTGGAGAT 1972967 36 100.0 29 .................................... AATATCCTTGATTCTCAGCGTTGACCCCT 1972902 36 100.0 29 .................................... GATAAGCTCTGCCGTATGCTCGCTTGTTG 1972837 36 100.0 27 .................................... TGAAGTATACGTGTCATCTGATAATCC 1972774 36 100.0 26 .................................... GACACGTCGCAACGTGCTAATCCACC 1972712 36 100.0 27 .................................... ACATGGGGGGTACTCTCCAATGAGTTG 1972649 36 100.0 30 .................................... ACCATCTTTGGCGGATAACCGCTTTTCAAG 1972583 36 91.7 0 .................................TTG | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.7 28 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : GGTTTTGATGTTGCCAAATTTTGACATACAAGCAAATGGAGAAGATGTATGATAATCGTCAGTTATGACATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGACAGGTTGCAATATTCGGTCTATGAAATTCAAAACAGCGAACGCATTTTAAACATCATCACCGAAAAAATAAAAGCAGAATTTGAGTCTTTATTTACAGGAGCGGATAGCGTCATTATCTTTCGGTTTACAGAACGTGAAGTATTAAGATTTGGTCATGCCAAACATCGTAATGAGGATTTGTTAATTTTATAAAAATCCTTGGCAAAAATGATGAGGTTTGTTATAATAAGAGATCTAAATCACACCCAAATGTTTACTTTACAAACCTAAGTCTTAATGTGTGATTTATCATGTTTTGGCGGTAAAAATGATGATTTTTTGTACAAAAAAACTTGCTAATTTCTCAAAAAATCATTAAAAATACCCCAAAACGG # Right flank : GCGTTTAAGATGATTAACCCCACTGCCTGTCCCGAAACGCTACTGCCGTGTCTTTGGCTTTTTTGATGGCAAGTTTGCGGTTATGACTGGCGAAGAGCTTTAACTGCCACAGTTTTTCTTGGTATAAGGTCAGATGGTCGCTTGGGTGCATGCGATTGATAAGGCGTTTGCTCGCCAGTACCGCATCAGGTGAGCGAGTGGCAATCTCATCGGCTAGGGCTTTGGCACGTGTCATCGGTTCATCATCGAGATGGGTGATGAGTCCGTAGTCGTAAGCGGTCTGGGCGTCAAGTAGGCGGGCAGACATGGCAAGCTCTTTTAGCCTATCCTTACCGATGTCTTTGGCAAGACGGGTCAGCCCCATGTCAGCGACCAGTCCCCATTTGGCTTCAAGTACCGACCATGTCGCCGATGGGTGGCTGATACGCACATCCGCCCCCATGGCAAGCTGTAACCCCGCCCCAAGGCACACGCCATTAACCACGGCAATCACTGGCACA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 2460921-2459809 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQC01000001.1 Moraxella lacunata strain NCTC7911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2460920 28 100.0 32 ............................ ACTTCTTGCCTCTTGCACCTGTGCAAATTTAC 2460860 28 100.0 32 ............................ AACCATCAATGATGGCGATACTATCTGGGTAG 2460800 28 100.0 32 ............................ ACTTGCTAGGGCGGTAAATGCTTCGGCATTAT 2460740 28 100.0 32 ............................ AATATTTATTCTGTCCATCCAATCTGTCTTGT 2460680 28 100.0 32 ............................ ATAAAGAAATGCTAAGCGGTGAGATTGCGGAA 2460620 28 100.0 32 ............................ TGACATTAAGCTTTTTAGAATAGCAAAAGAAC 2460560 28 100.0 32 ............................ TACAATTTTTATCGCCTTATATTTTGGCTATT 2460500 28 100.0 33 ............................ ACAATGTTTGAGCCTGTGCGATATTCGTTACGT 2460439 28 100.0 33 ............................ TAGCAGGGTGGGAGTAGCCCTTTGCAATTTAAT 2460378 28 100.0 32 ............................ AAGAAGTCAATGATGAGTTAAGTAACCAAATT 2460318 28 100.0 33 ............................ TAGAAATATCGGCTTGGCTTACATCTTTTGCAA 2460257 28 100.0 32 ............................ AAAAAGCACCTGCCAATAAGTCATCATAAGCC 2460197 28 100.0 33 ............................ TTGATGATATCTTCATCAAGTTCATAAATGCCT 2460136 28 100.0 32 ............................ CAATCTATGCCGTCGCCGAGCATGTCAGCTAC 2460076 28 100.0 32 ............................ TGTTACTCACAATATCGGTCTAAATAATGCTA 2460016 28 100.0 32 ............................ ACCAGCTCACGTACAATCATCTCGTAGTGGTC 2459956 28 100.0 32 ............................ AATACGTCTGATAATCTGCTCTGTGTGCAACT 2459896 28 100.0 32 ............................ AAGCAGTTCCATGACGGTCATCGCCACCGCCA 2459836 28 85.7 0 ..C........T.C..........A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCCTTATCGCATAGATAACTTAGAAA # Left flank : CGATAGCGGACGTGGGCGAGCGTGCGACAGGCTATGTGGTGGTAGAACGCCAACAGCGAGCGGATTTACAAAAACAAGCCGAGCGATTTGCCGAGTTTAAAAATCTGACGGTGGAGCAGGCGTTGGAGCATTGTTTGGCGTACAAAAAACAGCCAAAGGCGTATCCGTTTATTGAACTGTTTAGCCAAACCAATCAAGTGCCGTATCGGCTGTATGTCAAACAAACGGTCGTGGATAAGGCGGTGGACGGCGAGTTTACGGTCTATGGCATGCACAATCAAGGCGGAGCGATGACGGATAAGGCAACTGTTCCGCATTGGTGATTGAGTTTGATTGTGCTAAAATAAGGGGTATGATACAGGTTTATACCCTTTATTTTTTGACTATTTAAAAACTTGTTAACAATCAATCACTTATAAAAAGGCAAAAAAGCATTGGGTAAATGCCCAAAATATGGCTTTAAGTCTTGATATAAGTGGGTTTTATGTTGTATAATTCTA # Right flank : TTGTATTGAGCTGTAATTGCAATACAACCCAATACAATCCCCACCACACAGATAGCTTACAAGGCAAAAAAATGCTATAATAACCCACATTTTTCAAAGAATTAGGCGTATGCCAAAGGATTTTTATGAGCGAGCAACTTCCTACCAACGACTATAATGCCAGTAGCGTGCGAGTTTTGCGTGGACTAGAAGCGGTGCGAGTCCGCCCTGGTATGTACATTGGCGACACCGATGACGGTTCGGGCTTGCACCACATGGTGTTTGAGGTGGTGGATAACGCCATTGACGAGGCACTCGCTGGGCATTGCGATGAAGTGCTGGTTACCATTCATGCCGATGAGTCGGTGTCGGTCATGGACAACGGACGGGGCATTCCTGTGGACATTCACCCCGAGGAGGGTGTGTCGGCAGCCGAGGTCATCATGACGGTGCTTCACGCAGGGGGTAAGTTTGATGACAACAACTACAAGGTCTCAGGCGGTCTGCATGGCGTGGGCGTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTATCGCATAGATAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //