Array 1 86415-86158 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000001.1 Actinomyces oris strain S64C S64C_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 86414 37 100.0 36 ..................................... TTCAGTCCTCACTGAGGAAAGCTTCAGCGCACTCCC 86341 37 100.0 35 ..................................... TGTCGGTGGTCTCAGTCATGAGGGTTCCTTTCAAA 86269 37 100.0 37 ..................................... GGAGTACAAGGCGACGTTGCCGTCGCGTCGGGGTTCT 86195 37 75.7 0 ..........C.T............CGC....C.CGG | T [86163] ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 93.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GAAGGTGCATTAAGACTCGAATAAGGTCGCCAATGATGTCGGATGCTGCATAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTCCTTGTCCCGACCGACAAAGATGACATTACCAGTCAGAAAGCACCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGCATTAAGACATGCTCCATACCTGTGTGAACGACTGGATGATGCTG # Right flank : GGCTTGCCGTGCGGCAGCTGCCAACAGCGCCGGAAAACGGTCGTCCGACCGCCAGTCCCTTGAACAGGACCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGGCGCCGTCCTCCTCGACGGCAACCAAGACCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCGCAAGATTCCAGGAAACGTCACGCAGCCAAAACGCCTCTACCGCAGGAGCCGGCCAAGCAGACGCAGACAAAAACGGGCGGCCCCGAGAAACTCGACGACCGCCCACTCGCCGCTCATTCCTCGCCCGCCCACGAGCGGGCAGGCAGTCATGCGACCAGGCGGCCGGGCGGCGGCCCAAGCCGCCCCGCGCGCCGCCCCCGCTTCAGACGCGGCGCAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACACCGATCGCCACACCCGTCACCGGCAACCACCGCTCCCGAACACTCTGGGCGGAAGGCCGCTCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 52-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000025.1 Actinomyces oris strain S64C S64C_contig025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 52 37 100.0 38 ..................................... CTGGCAAAGATCTAGAGTGGGTTCGCTGGCTCGCAGAC 127 37 100.0 35 ..................................... GCCAACGACTACAATGACGTTGTTGACATTCTGTC 199 37 100.0 33 ..................................... CAGAGCGAGCGACACGCCTATGGTTCGCCGGAA 269 37 100.0 36 ..................................... AGCTGATGCTCGGGTGCCCCGGGGTGTCAGTCGTTA 342 37 100.0 37 ..................................... TGAACGCGCTGAATTTGGGTTCGGCCTGGCCCTTGAG 416 37 100.0 33 ..................................... CTACTAGCACTAAGGAGTGCATCAAAATGTCTA 486 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : GCTGGGTGCTTTCTGACGGGTCCTATCATGTCCACCATCGCTGAACGAATTG # Right flank : CCCCTGCCTCTCGGAGTGGCGCCGTTGCGCCGTTTCCAGGGGCTGGAGCGCCACCGGCTCCGCAAGCACCCCGCGGGACCGGCCGGCACCTCCTCTATTTAACCACCTTTTGGCGTCCTGACGCCAAGCGCCACCGACGCCCCATCAGGCACCTTCAGCCACCAGCTTCCGACGACGTCAAGCCAAAAGGTCGACGTTCCGGACTGTGGCTGTGGACACAACCTACTGCGGTGGAGATGGAGCCGGGCTCTGGACTCGGCGTCAAGGGCGTTTCCCACGCCGAGCCACCCGGCCGCCCAGCTTGTCAACGAGCAGCCAGATCCCACCGCCGATGAGGACCGACCCGATAAGACCGAAGCCAAGAATCCACCCCCATCCCGCGTCCCAGCCGCCGATGCGCTGGTGGCGGACCGCGATACCCTTGGCGGCCTCCCAGTTGGACCAGATCTCCAGGAACACGCTCAGCGGCAGGCCGATGAAGGTCAGAACCGCCAAGGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 12311-11001 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000034.1 Actinomyces oris strain S64C S64C_contig035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 12310 36 100.0 28 .................................... ACCTCAGTTCCGTCCAGACCTGCCAGCA 12246 36 100.0 28 .................................... CCTGCGCCCACTCGTGGAAGTCGTCGGG 12182 36 97.2 28 ...............A.................... ATCGCCGCCACCTGGCGCGCAATCATCG 12118 36 100.0 28 .................................... GGATGGCCGCGGCCGCGTCCTGATGCGA 12054 36 100.0 28 .................................... GGGAAGGCCAGCGGCCTGCCGTCTCTGC 11990 36 100.0 28 .................................... GCGTTGGATAGGTCCTGGCAGGGGGTGC 11926 36 100.0 28 .................................... GATAAGGCGGTCACGTCGCTGGCGTCTC 11862 36 100.0 28 .................................... TGTACCAGTAGTGGCTGTCGGGGTTCGT 11798 36 100.0 28 .................................... CTCAGTTCAACCTGGCGGCCGCCGAGGC 11734 36 100.0 28 .................................... GGCGATCACGCGACCCGAGTGGGTGCGT 11670 36 100.0 28 .................................... GTGGGGCGGTGACGGGGCGGGCGGTGGA 11606 36 100.0 28 .................................... GGTCGGATCCCAGTCGGGGTCGCTCCAC 11542 36 100.0 28 .................................... CTGACGGGCTCCCTGAGCCCAGGGGCCT 11478 36 100.0 28 .................................... AGAAGTTCGAGGTCCCGCTGCCGGACGC 11414 36 100.0 28 .................................... TGCCCTCACGCTCGCCCAGAGTCAGTCG 11350 36 100.0 28 .................................... AGTTCCCGCAGTCGTCCATGTCGCCCCA 11286 36 100.0 28 .................................... ACTGCAAGGCGTACACCTTCGCAGACGG 11222 36 100.0 86 .................................... CCATTCTCCAGGCCGTCCGAGACGCCAGGAGGTCTATCAAGGGGTCTGGTGACTGATTCCNNNNNNNNNNNNNNNNNNNNNNNNNN 11100 36 97.2 28 N................................... ATCGAGCTCGGCCCGACGGCCCCCTCTG 11036 36 86.1 0 ...A.........AA...........A.A....... | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 20 36 99.0 31 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CGTTCCGTGACGACGGTGCCACGCTACCGACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGCCAGTACTGTGAAGGGGACCGAGCCCGATTGGATGTCCCATCGTGGACCGGTCGGAGGCGTGAGTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCACCTTCTTCTGGATGAGGGTTTCTGGATGGCGCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTGGCCGGCGAGCGCCGTAGGGCGAGTGCGATCAGGAACAACCTGCCGCGCGGCGGCGAGGTGCGGATCCTGTACGTCACCGACCGCGAGTGGTCGCACGCGCTCTGTTTCCGCAACGAAGAACCCGTCGAGGCTGAACCCGAGCCCCAACAGCTCATGATCTTCTAACCCCTGACGAGGCGTTTGCGCTGGTCAGACCCCCTTGATAGACGTTTCT # Right flank : AGTGAGGTGACATGTGCGCAGGGCGGTGGGGGCTCCGGCGTCGTCGGGCAGGGCAGGTGCCGGGCCGACGACGCCGCGGCGCTCCTCGGTCTCGGCGATCATGCGCTCCTGGATGGCATTGGAGGGGACGGTGGGGCGGGTCAGGTGGCGTGAGAGTCCATCGTGGCCCAGCCACCCACCCCCACTGCGCAAGCCACCGCCCCATCGAGGACTTACTTTCGCCACCAGGACTGCGTTCTCCCCCAGATGGCGACGAGGAGATCCCAGTAGTCTGGAGGACAACGCAGTCCCCGATCGAAAAGTACGTCCTCGGTGGCGACGCAGGCGACGACAACACGCGGGCGGCGCGCCAGCGGAGAAGAACTCCGCCTGCGCACCGCCCCGGGAAGGCGGGTGGGGGCGAAGGCGCACGGTCCGTGTCGCCTCAGTCTCGCCCCCACCCGTGAGCTACGCCCCTCGCGCAGCCTCAGCTCGTCGAGTCCTCGCTCTCCGAGGTGCCC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 78628-79026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000041.1 Actinomyces oris strain S64C S64C_contig042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 78628 37 100.0 34 ..................................... AGCCCTACCTCTACGGGTGGGTGACGGATCGGCG 78699 37 97.3 37 ....................................C TCAGCAGGTGAGCCAGGAAGCGCGCCAGGCGTTCCAG 78773 37 100.0 38 ..................................... CCATCATCGTTAGGCCCGAGCAGTCGAAGCTGTCCGGT 78848 37 100.0 34 ..................................... GGTCCGGTTCGCAGGCGGGCACGTGGGTCACTGG 78919 37 100.0 34 ..................................... CGGAGGGCGTGACGGCGCTGAGGATGGACACGAG 78990 37 94.6 0 ...................................TA | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 98.6 36 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGCG # Left flank : TTACAAGGGAGTGACGGTGCGCTGATGCGTGATGATGTCAGACGTGTTCTCGTGGCCTACGACGTCCCGTCCGACCGACGCCGGACGCGGGTGGCGAAGACGCTGCTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTGGTGGATGCGGCGCCGGCCAAGCTCCTGCGGATGCGGGGTGAGCTGGAAGAAGTCATCAAGACGGATGAGGACTCCGTACTCCTGTGCGACGTCGGCCTGCTGTCCTCCGTCGATGAGCAACGATTCTCCTACGTCGGCCTGACCAGGACCATCACGCCGGAGGGGCCGCTTATCGCCTGACGCGAGCGCTCCGGTACTCAAAGAACCCTGGGCAGCGCTCGCGGCAACAGAACGTTGAAATGGCGGGGATTCTGCGAGGTGAGGTGAGGGGTGGGGCGGCTGAGCGGGAGTCCAAGCACGGAGCGCTCGCGAAGCAGCCTCAGAGGGGCTTGGTGACGGGCTATACTGAGCGGACC # Right flank : AGGTGGGGATTGATGCACCTACTACGGTCGTCGATCCCCACCTACTGCTCTTTGTGCGTCACCTTCCAGGCTCGCCTGGCCCCTTCCAGGGCGGCGGGCAGGGCGGCGAGCAGGCGCTCGACATCGTCGGAGCCCGTCTCCCGACCCAGGGAGCAGCGCAGCGTAGAGCGGGCCGGCCCCTCCTGAAAGCCCATCGCCAGGAGCACATGACTGGGCTGGGTGACCCCGGCGTGGCAGGCCGACCCCGCCGATGCATCAACCCCCGCCAGGTCCAGGGCCATGAGCAGCGCCTCGGCGTCGGCCTCCTCGAACCACAGGTGCGCCGTGGAGGCCACATGATCGGCACCCTCCGGCAATGTGGCGTGAACACCCGGAAGTGCCCCAGCGCCCTCCAGAATCCGGCGCCGCAGCGCCGCCAGCCGGGACTCCTGCTCCTCCCTCTCGGCGACCGCCAGTTCCACCGCCAGGGCCAGCGCCCGGGCCGCCACCACGTCCTGCGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 8526-8856 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000068.1 Actinomyces oris strain S64C S64C_contig070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8526 37 100.0 37 ..................................... GGGCTTTAGCATCCCGGGCCTTTGAACACGTCTCCAC 8600 37 100.0 36 ..................................... AGCATAGGGATCTCCTAATAGGGATGTAGAATGAAA 8673 37 100.0 35 ..................................... CTATCAGCCTCCCTCATGTAGGATAACCACACGAG 8745 37 100.0 38 ..................................... ACGCACGGCAACGTGCATCACGTCTGGCTTCCAGCCAA 8820 37 73.0 0 .....C....G....A.G........CCT...G.C.G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 94.6 37 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GGCCGGGCGCATCGAAGCGAACGAACACTGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGTTGAGTGGTGGGTGCGGCAGGGGAGGCCGACGGCGGCGCCGGCTGGTGGCGGGAGGCCGGCGCAAGGCCGTCTATCTCTTTCTTTCTGACGACACTACCGGAGGGGAGGCGGCCTGCACGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGACGGCCAGGAGGAGGCGGAGAGGACGAGAGCCGGCGGCGCGCCGGCCGGGCCATGGAAGCACAGTGTGTCGACAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAATGGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCAAAAGGTGGTTAAATAGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : GGACTTACAGTCCACCCTCATCTCCTTAACAAGCTGAGCGACCAGGCGGTTCGGCGGAGGAAGCGCTCTTGACGCCGAGTCCAGGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGGCCGGAGCGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGCGGCTCTGGAGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCAAAAGGTGGTTAAATAGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCACTCCGAGAGGCAGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTCTGCCAGTCCAGTTGCTTGGCGGTAGCGAGCCCGCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTGATGCTGTCACCTTCACAGTGGCCCTCGCTGAGGGTCAGAAAGCACCCAGCACCAGA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 9186-9873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000068.1 Actinomyces oris strain S64C S64C_contig070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 9186 37 100.0 37 ..................................... GTCTGCCAGTCCAGTTGCTTGGCGGTAGCGAGCCCGC 9260 37 100.0 36 ..................................... GTGATGCTGTCACCTTCACAGTGGCCCTCGCTGAGG 9333 37 100.0 37 ..................................... TGCTCCCCAGTTCTGCTGGCGGGGTGAACTCAATTGA 9407 37 100.0 35 ..................................... CGACTGGCTGACCCCAATCACCTCATCACCCTCCC 9479 37 100.0 36 ..................................... CGTTAGCCATGGGCTCAACCTCTGCAAGAATCTCCT 9552 37 100.0 34 ..................................... TAAATAGCTGTCGGTAGTGAGGCTACCGCTGGAT 9623 37 97.3 33 ..............C...................... CAGGAGGGGCAGACCTTCGTGCCGGTATAGCCA 9693 37 97.3 34 .....................C............... ACAGACCCCGGCCGCCAGTACTAGCTAGTGCTGC 9764 37 97.3 36 .....................C............... GTCAGTGACATCTCTGATGTAAGAGAGGATGAGGCT 9837 37 97.3 0 .....................C............... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.9 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CAGCACCAGAAGGTGCATTAAGACCTATCAGCCTCCCTCATGTAGGATAACCACACGAGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACACGCACGGCAACGTGCATCACGTCTGGCTTCCAGCCAAGTCAGCAAGCGCCCAACGCCAGAAGGCCTATTGACAGGACTTACAGTCCACCCTCATCTCCTTAACAAGCTGAGCGACCAGGCGGTTCGGCGGAGGAAGCGCTCTTGACGCCGAGTCCAGGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGGCCGGAGCGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGCGGCTCTGGAGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCAAAAGGTGGTTAAATAGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCACTCCGAGAGGCAGG # Right flank : TTGTAGGAGTGGATCTTGCCGTCGGACCCGCTGGTCAGAAAGCACCCAGCACCAGAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 2525-2194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGO01000072.1 Actinomyces oris strain S64C S64C_contig075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2524 37 100.0 38 ..................................... TGGAGCCAGGAAGCTTTAGGCGAGTCTGGTTTGCTCAG 2449 37 100.0 36 ..................................... CGTTGAGTGTTCGCCAGAGCCGCTCGATGACAGCGG 2376 37 100.0 37 ..................................... TCAGGTGCTTGACTATGAAGGCCATGGAGATGGCCAT 2302 37 100.0 35 ..................................... TGAGGTATTCACCCCCTCTCCTCCGAAGTTCCGGC 2230 37 78.4 0 ...............A..........CCT...C.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 95.7 37 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CAGAAGGTGCATTAAGACGTTCCCTCGAAGCGCATGAGTGACTGCGAGGTAG # Right flank : GAATTGCCGTGCGGGGGCTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCGCCAGCCCCTTGAACAGGCCCTCCGAGCCGACTCGAACCACCCCGCCACCATGGGCGCCGTCCTCCTCGACGATGACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCCCAGGATTCCAGCAAGCATCACGCAACCGAAACGCCTATACCACAGGAACCGACCAGCAGGCGCAAAGCCAGGCGGCCGCGCCAAGGAGCCCAGCCGCCCGCTCGTCACCCACTCGCGGGACACAGTCAACGCGTCGGTGGACCAACATCCATGTCCCACACCAGGAGGCTTATTCACAGCATCCGTCAAAGACGCTGTGACCTCGCAGATGCCGGCGCCGGCTAGCCCTGCGAATAAGCCTCCAGCACTGCTTCAGCAGCGACGCAGAGGCAGGACCATGAAGCCACCGAAAGAACGGTTGCCAACACCAGCCTTTAACTTATAACTTAAG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //