Array 1 21103-19922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDP010000020.1 Bifidobacterium dentium strain 77T2 Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 21102 36 100.0 36 .................................... CAAACGGCAGACGCTACAGGGTCATCGCCGGCCACC 21030 36 100.0 36 .................................... GTGCTTTTCGCGTCGGTGCACGTTTCCGGCGGAACC 20958 36 100.0 35 .................................... GTGTAGGTGACGGTCGTCGTGGTCACGCTACGTTC 20887 36 100.0 36 .................................... CCGTCGACGGGTTTGCCGATCTGCGCGCGGCGTACG 20815 36 100.0 34 .................................... GCGACCGTGAACGCCACGGCATACTCGGGTGGCG 20745 36 100.0 35 .................................... CCAGACCTGCACTTCGTCGTGAGTGATGGACTGCA 20674 36 100.0 35 .................................... GACGATTTCACCAACGGCCTGCAGAACTACATCCG 20603 36 100.0 36 .................................... ATTTTTAAACTCGTTCGGTATCTTTTACATTCAAAT 20531 36 100.0 39 .................................... GTCACGCCAGGCGACAAGGACAAACGTCCGAAGTTCGAG 20456 36 100.0 34 .................................... TCGACGAGCGGCAGACTGTCCACGTCATTGACGA 20386 36 100.0 37 .................................... CGTCTGGATGACGGACAGTACGGTGCCGATGATGGTG 20313 36 100.0 37 .................................... CCAGGAACGACAACAGTCTCACGGCCGCCCTGCCCGT 20240 36 100.0 36 .................................... AAGCCCCTAGGATTCCACGAATGGCTCCAAGGCCAA 20168 36 100.0 35 .................................... TTACCGTCATGAGGCACGAAAACATGGATTCCATA 20097 36 100.0 103 .................................... ACGTATTTCCCGTTCATGGGCACCCTGAACAAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 19958 36 83.3 0 ...........T.GT........CT.........A. | C [19956] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 16 36 99.0 40 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCGTCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTATAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : CGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGCGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCGTCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGTCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 211575-211751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDP010000001.1 Bifidobacterium dentium strain 77T2 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 211575 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 211626 24 100.0 27 ........................ AACAGGGTGGCGAATCCGAGGCACGGA 211677 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 211728 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 97.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGACCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACTATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCGTCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCCTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGTTGCGCGGACATGGCCGCCAGCTTTAAATTTGACCTCATGGGCGCGGTGGTCGCCCTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTGGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 38598-38421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDP010000003.1 Bifidobacterium dentium strain 77T2 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 38597 24 100.0 27 ........................ CTCAGAGGCACATGCAGGCATCCTACA 38546 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 38495 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 38444 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATTGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //