Array 1 404976-403689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066059.1 Streptococcus oralis strain FDAARGOS_1021 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 404975 36 100.0 30 .................................... TCTTCCCATAGTTCTTTGACTTCTGATTCT 404909 36 100.0 30 .................................... TGAATTTGGCTTTGACGTGGGCGTGTACGA 404843 36 100.0 30 .................................... AAATTGTTCGAGTCCATAGATATTGACCTT 404777 36 100.0 30 .................................... TCGAACTTATCGTCTGTCTCCCCTGTCACT 404711 36 100.0 30 .................................... CGACACACCAAACGGAACCAAGCGGGTCTA 404645 36 100.0 30 .................................... GATTTTTCGAAATTATAGATCTTTAACACT 404579 36 100.0 30 .................................... TCATAATTGAAAATAATAAGTAACTGACTA 404513 36 100.0 30 .................................... TAGGTAGCGTTCAAGGTGGTTATAGCCCTA 404447 36 100.0 30 .................................... TCAGGTATTTGAAACTAGAAATACCTATAC 404381 36 100.0 30 .................................... AATTAAAGGCGTTATTGGTTTCAGGAATAG 404315 36 100.0 30 .................................... CCTTCTTTTTGAAAGAGAATGGCTATACCT 404249 36 100.0 30 .................................... AAATCCAGAGAAAGACAATCCAGCTACTGC 404183 36 100.0 30 .................................... ACAAGGCATGGGTTTCTCATTACGCAATCA 404117 36 100.0 29 .................................... ATCATTCTCGGAGTTAACCAATTTGGGAA 404052 36 100.0 30 .................................... GACGGTGATGCGCAGACCACTATCCAAACC 403986 36 100.0 29 .................................... TAAGTCTTCTTTCATCTGACTCACATCAT 403921 36 100.0 30 .................................... AGGTCAAGTAAGAATCGCTTCACTTCACTC 403855 36 100.0 29 .................................... CAAGTTGATTAAAGACTGGTTAAAGTCTA 403790 36 100.0 30 .................................... CGTTACGTTGTGCTCTTGGTTAAGGACGTA 403724 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCTGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTATCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCTGTATTGGATCGATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGGGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGGAACAAAAATTAAAATTGACGAATTTGAG # Right flank : GATCTGAATTAGATCTAACTCAGTAATCGGAACGGGAACGCCCTCTTTAGTTTCTTAAGAATCAGCTCACCTGTATGGTATAATGTCATATAGTAGCGACCAGAGAGGAAGGGAGCGGAAGTGATGCTAGCTATTTTTATTGATTCTATAGGTGACAAGTCAGGGACCTATAAGTTGTTAAGAAGCCATTCATCCTTGCCTTTTTCTTTAATCCAATCTAGAATCAAAAATCATGACACGGTGATCGAAGTTGACATGTTAGATTTGGATGGATTAAGAAAGGTTCGAGAACTCATTCATGAGTTGAATGTCATTGGAACCAAGGTTACGATGAGGGATTCGACTGGTATTATCACCTTAGAAATAGTAAATAATCTTATTTCCACCTTTGAAGAGATTGTGGCTGAAAGAGAAGAACTGGATGCCCTGATGTTTGAGGAGGAAGAGTGAGTGCTACGTTTTCCAGTGGATTACCAAGTTAGTTTTTTAGTAATAGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 668708-666605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066059.1 Streptococcus oralis strain FDAARGOS_1021 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 668707 28 100.0 33 ............................ CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 668646 28 96.4 33 ............T............... TACCACTGCTCTTGCGATATTCTTTGCCAATCT 668585 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 668524 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 668463 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 668402 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 668341 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 668280 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 668219 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 668158 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 668097 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 668036 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 667975 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 667914 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 667853 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 667792 28 100.0 33 ............................ TGCCCCGAAAGTCTTTCAAGGATTTCATGAACG 667731 28 96.4 33 ....................T....... CGTCTTAAAACGCAAAATAAGGCGCTTGAAGCC 667670 28 96.4 33 ....................T....... CAATATTTTAGAAATTTTCCTTTCTATTTTTAA 667609 28 96.4 33 ....................T....... CAGTCCACAAGCGTAACTTTCCGTGTAACCCAC 667548 28 92.9 33 ..............T.....T....... TGAGCTTGAGGCAGGTTTGCTCTCAAGTCCTAA 667487 28 92.9 33 ............T.......T....... TAAAGAAATCTCAGACCGTCGCTACAAGTCAAA 667426 28 92.9 33 ....................T.....T. TGTCAAAGTCATAGTGTTTTTTTGACTGCCTGA 667365 28 96.4 33 ....................T....... TATTGTCAATGGACAAGAGATGACGGCAAAAGT 667304 28 100.0 33 ............................ TCTTGCCTTGACATCAAGCTCTCAAAGGCGTTT 667243 28 100.0 33 ............................ CAAACTCAGGTAAAGCTGTATTGATTTCGTCAA 667182 28 100.0 34 ............................ TGGAAGAGTTGGGGGCTAAGTGGGGCCTCAGTGA 667120 28 100.0 33 ............................ CAGCTACATCAGGAACTGCTCCAGCTTCAAGTG 667059 28 100.0 33 ............................ TGGCGGAGCCGTCCGCTTGGTCATTTTGAAAAA 666998 28 100.0 33 ............................ CTTTCGCGACATAAACGCTTAAATTTAAAATCC 666937 28 100.0 33 ............................ GTAGTCTTTTGCGGTCTCAAAAAAAGACCTGGT 666876 28 100.0 33 ............................ TGAGCCTAAAGCAATTTCAAAAACATTTAGGAA 666815 28 100.0 33 ............................ CATTATGGATTTGCTTTATTATTATCTGCATTA 666754 28 96.4 33 ....................T....... CGTGACCTTCCGCTTAATGACAGATTACAGCCC 666693 28 92.9 33 ......T.............T....... TATCAGCATGACTGATAAAGACTTAAACACATT 666632 28 92.9 0 ..............A.....T....... | ========== ====== ====== ====== ============================ ================================== ================== 35 28 95.9 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CCGCATCTTTCCGAATTGCTCGATTTGAGAGTTGTTTTTCCCGCATACGTAGGAGATTGACTACATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTAATATAGGGAAAAAGCATATTCTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGAAGAGCATAAGAAAATTTTTCTTGTATCTGTTGCCTTAGAGTGTTTCAGAACTAAATGTTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTCCTAGCAGGTGCTAGTGAGTCCGAGGTTGCTCCCCTCGTTGAGCGCCTTATTGCAGACAAAACCTTTAACCTAGAGACAGCTCAGCGCTATCTTGAAAACTTAAGATCATAAAAAAACTCAGAC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1669482-1670297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066059.1 Streptococcus oralis strain FDAARGOS_1021 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1669482 35 97.1 31 .......................T........... CTAGAACATGAAGTGATGTTTTATTTAGGAG 1669548 35 97.1 30 .......................T........... CTATCAGCGTTTTACTATCATTTGGGTCTG 1669613 35 100.0 30 ................................... AGACACAAGCAGGTGATATCTCTGCCTATA 1669678 35 100.0 30 ................................... AGACAAGCTGTCGCCAAACATGGTCAACTA 1669743 35 100.0 30 ................................... CGATTCGGGAGCTTGTTCAAACTCATAAGC 1669808 35 100.0 30 ................................... TAGATTTCAACCAGTCTCTTATCAACCAGT 1669873 35 100.0 30 ................................... CTGGATTATGAAGTGTCAACGGCTGAAGAC 1669938 35 100.0 29 ................................... ACTTTTACGTCGCAAACCAGACATCAAAT 1670002 35 100.0 30 ................................... AGGTATTTGTCAATATCGGTGGGATTTCAG 1670067 35 100.0 30 ................................... GCAGATGTTGAAAAAACATTGATCAATCGG 1670132 35 97.1 30 .......................T........... AAATCAGACAAGTCAAAACCATTCCCCTGA 1670197 35 97.1 31 .......................T........... TCGCCAGACTTGATGGAGCTTCATGGGCTTG 1670263 35 97.1 0 .......................T........... | ========== ====== ====== ====== =================================== =============================== ================== 13 35 98.9 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : ACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTCGGACTTCGTCGTTAATCTGCTTTATTTTCTACTTACATTGCGTTGTCACCTTACCTCGATATACTAAAGTATTATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGGCTCATCGCCTAGTCTATAAACGGTTTATCCGGCAAGAATCATGATGCTAAGGGCGTTAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTAATTTATTACTGACTAATACAGGAGGCTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : GTTTTATCGGTCACAATTTTGGATACTACAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //