Array 1 204705-202522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000012.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 204704 29 100.0 36 ............................. ACGCGGGCAGCACGGGGTTGGGCTTGGTGATGGGGA 204639 29 100.0 34 ............................. CTCGCCGCTCCACGCGGGGCGGTGGCCCTGGGCC 204576 29 100.0 35 ............................. TACAGGACGTGATGTCCGACCTGCCCCGCCTGGAA 204512 29 100.0 37 ............................. GCCGCCGGGGGCAGCATCACCGACCCTCTGGTCTTTG 204446 29 100.0 36 ............................. CAAGCTCTGTGTGATGCCCTGTTTTGAGGCGTTCCA 204381 29 100.0 37 ............................. TGATTGAAGCGGCGCAGGACGCGCCGGCCCCCGAGGT 204315 29 100.0 35 ............................. CGTTCGTCTCCTTCTTTGCTACGGCCTGTGTTGAG 204251 29 100.0 36 ............................. CCAGTGACCACGCGCATGCCCTGGCCGGTCCCGCTA 204186 29 100.0 36 ............................. GTGGGCATGCTGGTGGCGCTCAGCCGTTGAAGGCTG 204121 29 100.0 36 ............................. TCCTGCGTCATCACCACCACGCTGATCAGCGCCTCG 204056 29 100.0 36 ............................. GCGGCCCCGGGCAGGGGCGTGCCCGCGGTGTAGTCC 203991 29 100.0 36 ............................. GACGCCCTTTGGTGGGCAAACCGCATGGCTGACCAG 203926 29 100.0 35 ............................. ACGACGCCCTCACCGGCCTCGCGTTCGCCACCGAC 203862 29 100.0 36 ............................. ACGCGGCCGTCCAAGTCGCCCACGCCCTCGCAGTCC 203797 29 100.0 36 ............................. GTCGCAGCCGCTAGGAGTGCGGCCACCGCAGCCACC 203732 29 96.6 36 ....G........................ GCGCGGTGTGCGTAGGAGCCGGCCGCGGCGGCGGAG 203667 29 100.0 37 ............................. GTGTGCGCGAAGGCGGTGACCAGGCCCACGCCGTCCG 203601 29 100.0 37 ............................. GACCGTACGGTCACCGGCACCACTGGGGTGATCGCCC 203535 29 100.0 41 ............................. CGGAGCTGGGCTGGCTCGTACTCCAGCGCGGCGCGGGTCGT 203465 29 100.0 37 ............................. GTCCGGTCCGGCATCCTCCAGGGCGCCGACATCACCG 203399 29 100.0 36 ............................. TGGCGACGGCGGCCGGGTCGGAGAGCAGTGGCGCGG 203334 29 100.0 36 ............................. CACCGCGTAGGCCGGTGCCGGCCGCCCGGGTGATGC 203269 29 100.0 36 ............................. CTGTCCTTGCCGTAGCGGTTGAGCTTCGCGGCGCCG 203204 29 100.0 35 ............................. CGCGTATGTAGGCGACCGCCCGGCGAATGGCCGTA 203140 29 100.0 39 ............................. CTCAGCCACATGACCCCTCGCGAGGCGTGGCTGTTCTGT 203072 29 100.0 37 ............................. TCGCGACCGATGACAACCTGGCCGCGCTCACAGGCGG 203006 29 100.0 36 ............................. GTACGAGGACGTGCGGGTTCATGACTGGGAGGTCCT 202941 29 100.0 37 ............................. CCCGCGCCCACGCACGCCGCCCCAGCTCCGGCCAGCC 202875 29 100.0 37 ............................. AGGACTGCAAGATCTTCCCCCTACTCTCCGACCCCGC 202809 29 100.0 36 ............................. ATGACGACGACCTGCTCAGCGGCACTCAGGACCTGG 202744 29 96.6 35 ................A............ GCATGGCCCCGCTCCTCGGCGCCGAGTTGCAAGAG 202680 29 96.6 36 .....................A....... TCCAGGACGAACCGCACGTACGGGTCCATCCGGCCG 202615 29 100.0 34 ............................. AGCACAAGATGTGGGTGTACGGCGTCGGCAGCTC 202552 28 82.8 0 .............T....TC....-...G | A,TA [202529,202535] ========== ====== ====== ====== ============================= ========================================= ================== 34 29 99.2 36 GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Left flank : GAAGAACTCGCGACAACAGTCCACCACCGGGGCCTCAAACGCCAGGTGAGCTACGAGGAACTGATCCACCTGGAAGCCCTGAAAGTCGTACGACTCTGCCTCGAAGGCACACCGTACAAACCGTTCCGACCGTGGTGGTGAGCGCTCGTGTTCGTCATCCTCGTATACGACACCGCTGTAGAACGCAATCCGAAAGTGCTGAAGACCTGCCGCAAGTACCTGCACTGGACGCAGCGGAGCGTCTTCCAGGGCGAACTGTCCGCAGCGCAGTACAGGGCCCTGATGGCAGCGCTGGGCAGCGTGATCGACCCGGCGTACGACAGCATCGTCACCTACAGGGCCCGCTCACCCGACATGGTCGAGTCAGCGACCCTCGGAGTCGCGCTCGGCGGGCCCGGAGACATCCTCTGACCTGCGCAGATGCATCACCGCCGGACTACTGCAGAATCGCGGCGCGCAGGCTTTCGCAGAAGCCTTCCGACCTGGGGTTTTACCCTCGG # Right flank : GGGTGGGCTGCGCGCATGAGGCGAGGGAGCCCAACGTCAGTGTGTGAAGACAGAGTTGGACTCCCTCGCGACCGCACTCTATGTGACGACCGACGACCTGCTGAAGGAGTTACCGCATCCCGCTCCGTGGCGTCCAGCGATCGGGATTGCTCCGCAGCTCAGTGATGCCGAGTTGGTCACGCTCGCGATGATGCAGGCCATGCTCGGCTTCACCTCCGAGGCCCGGTGGCTGCGGCACTCCCGTTCCCATCTGCGGCACCTCTTCCCGTACCTGCCTAAGCAGCCCGGCTACAACAAGCGCCTGCGCAAGGCCGCCGAGTTGCTTCGGCGGGTCACCCGGCTGCTGGCCACCGACACCACGGTGTGGAGCGACGACGTGTGGGTCGTGGACTCCACGCCGGTGGAGTGCGGCCGCTCCCGCGAGACCGTGAAACGCTCCGACCTGGCCGGATGGGCCGAGTACGGGTACTGCGCCAGCCACAGCCGCTTCTTGTGGGCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 69931-70310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000002.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69931 29 100.0 32 ............................. TCACCGCGGAGGCCCACGTCCCGCTGCGAGTC 69992 29 100.0 32 ............................. TTCTCGATCTGCCACTCGCCGTCGAGGCGCCA 70053 29 100.0 32 ............................. TTCGGCGGTGGCCTGGTCACGGCGGGGCTCGC 70114 29 89.7 32 .......GA...................T TACGACGGCGCCGAGAGTTGCGCCGATTATGA 70175 29 96.6 32 ............................T CTGGGACGCCGGTCTCTCCAGTCGCTGAGGCG 70236 29 96.6 17 ............................G CGTACGGGCAGTTGGGG Deletion [70282] 70282 28 75.9 0 .C..G...T........-.A.......GA | G [70288] ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.1 30 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGGGTGGACAGCGTGGTGGTGGGGTGGTGGCTCGTTTGTTTCTTCCCCGCCTGGGGTCTCAGATGAGATCAGGGACACATTGCGGGTGGGGGTGGGTGGGGGCGTTTTTGGTGGGGGTGGGGGTGTGGTTCCGGGGGCGGGGGTGGTGGCCGCTGGGTGCGGCTTGGAGGTGGTTGTGGCTGGGGGCTTTGGGGAACTGGCGGGGCTGGGGGGCTTCGGGGGCTGGGGGCGTGTTCTGCGGGGTAGCGGTTGCGGCTTGGGGGCTTTGGGGGTGGCGCCGGTTGCGCCTCGGCGGCTGCGGGGGCTGGGTGGCTTTTGTTGCTGGCCGGGTTGGAGGGCTGGCGGGGCGTACGCACCAGCTCGGATTTCGGGGGCGGGGTACGGCCCGGCGCCATAGAGTGCCCAGGGTGGTACGTAAACACCGTACGGGCGCTATGTCGGAGTTCGCAGAAGTGGGTAAAAACCGGGGTGCGGCGCGGTAACGTCGCAGGTCGCGAACT # Right flank : AGAGCTCGCACCCCCGGCTGTTGCGCAAGCCTTCGCGATGCCGCCGGTCACTTCCGCCGCTGCGCGCCTTCGGGCCATACGACGTCCACGGGCGTCCCGGCCTCTCGCGCGGCCAGCACCACATCGGCTGTCCCCCCGCCCTTGCCGCTGGGCGGCGCACCGTCCCACACGGCGATCAAGCGATCGGCTCGCGCAAGGAGGACAGCGTTCGCTGCCTCGTAGGCCGCCCGGTTGGCCGTCTCGTGCGGCATGACGAGGACTTCGTATGCGGCTTGGCTCAGCCGGTCGAAAGTCTCCGCATGTTGCAGCTTCACCTTCGCCTGCCGGTAGTCCCGGGACGGGATCACCACGACCAGCCGCCCACCGACCTCCAGCACAGCCTCAGCGAACAGCGAATCCGCACCGGCCGCGATACAGGAGAGCCCGACGAGATCACCATCACTTCGATAGTGCAGGACATCGCGCAGGGCCGCACGAACGAGGGGAATAGCGGTATCGGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74491-75135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000002.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 74491 29 96.6 32 ............................T CCAGTGCAGATTTCGCGTCATTCCCTCCCACG 74552 29 100.0 40 ............................. TGGCTAGGAGACGCCGCCCTCGTCTGGGGCGTGGGCGGCA 74621 29 100.0 32 ............................. GGTGCCCTCTTCCCCTTTGCCGTCGATCAGGA 74682 29 100.0 32 ............................. GGTTCCCGGTACTACCGGGACGTATTGGGCGG 74743 29 96.6 32 ......T...................... AGACCCTGATCCTTCACCACTTCACCGGCGAC 74804 29 100.0 32 ............................. GACGTTCCCCGCCCCAGAAGCCTCCGAACCAT 74865 29 100.0 32 ............................. GTCGCGGCCACCATGCGGGCCGTGTGCGCTCG 74926 29 93.1 32 .............G...........C... GCAAGCGCACCTGGAGGGCTACAGCCTGTGCG 74987 29 93.1 32 .............G...........C... TACTACGCCCGCGCCCACCAGGCGCACCCCGC 75048 29 93.1 32 .............G...........C... GCTGTCGCCGTGGTCGCTCAACTCGACATCGA 75109 27 86.2 0 .............G.......--C..... | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 96.2 33 ATGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : ACCGCCGGCCCCGGCCCCCACTGGGCTCGCCCCGCGGGGGCGCAGGGCAGCCCTCGCTACCTCGCGTGCGCGATCACTCTGGCCGGAGACCTCGCCCCCGCAACCCTCGCCACCTGCGGCCCCCTACCCATCCGCTGCCTATGCGGCGGCCCCGTCTACCGCGACCAAGCCGCCCCCGGCACCGACACAGACGGCAGCGAGTATCTGATGCACCCGGCCTGCGCCCAACAGGCCACCACCACCAACACCGCCCGCATCAGGGGGCGACGCCGCGCCTAACTCTCGCGCCTGGACCGCCTATCGAGGCAGGGCCAGAACGTTGGCCAAGGCGTGCCACGCGCGGGTGACGCGTTGAGGGCGAGACGAGAGCGGTAGATTCTCCACCAGAGCGATCTGACAGGAGGGCTGCGATGGATATGTGCTGTACAAGCGCTATGCCGGAATCCGCGGAAGTGAGTAAAAACCGGCTATCCGCGCTGTAAACCCGCAGGTCACGAACT # Right flank : CACCGCGAAAGCCCCAAGCCCCGCCGCCACACGGCCCGTTGTGTCCGTATGGGACTCGTCCCGTGCGGGGCGTGCGGTGGGGGCAAGGGGCTGCGGGGCGGAGCCGGTAGCTTCGGGACGTGAAGGGAACGGCTCCGCGACCGCGTTCGGGAAGGCCTCGGTCAGGTTTTCCTCGGTGGCCAGTTCGTCCTCGGCGCGGCCCGTGTCGCGGTCCCGGGCGGTGTCCTGGCGAGTGTCCTGGGCCCTAGGTGTGGTCTTTAGGTCGCGGTCCAGGCCCAGGGCGGTGCGTACGTCCTGGTCTTCGTCCAGGTTGAAGCGGCTGTTCGTCTGCGCGAAGACGATGCCCTCGTCGAACGCGTCCGTCTCGATGAGCTGGTTGAGCCGCTCGGCGGCGCGCTCGGTCAGACGGACGTGGGCCTCCAACTGCACTTCGCGCTCGGCCACGTTCAGCGTCTCGCGCGAAATGCGCGGGCTGCGGGCCGAGCCGATGGCCATCGAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : ATGGTCCCCGCGCGTGCGGGGGTGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 255718-255868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000002.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255718 29 100.0 32 ............................. CCGGCGCGTCCGCCAAGATCAAGCAGACCCTA 255779 29 96.6 32 .......C..................... GAGGCGATGGTGTGGCGCCTGCTCGGGCAAGC 255840 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCTCGCGCGTGCGGGGGTGGTCCC # Left flank : CTATGGGGATGAGCCGATCTGGTGACCGTCATCATCCTGGCCAACTGCCCCGCGGGGCTCCGCGGCTTCCTCACCCGCTGGCTCCTGGAGATCTCCCCCGGCGTCTTCCTCGGCTCCCCATCGACCCGGGTACGCGACATCTTGTGGGAGGAGGTCCGCCAGTACGCGGGAAAGGGCCGCGCCTTGCTCGTCCACCCGGCCGACAACGAGCAAGGCTTCACCTTCGCCACTCACGATCACGCCTGGCAGCCCAAGGAGCACGAAGGGCTCACGCTGATCCACCGCCCCGCCCCGAAAACCCACCACGAGGAGCCCCGCACCGCGCCCCCGCCCCAACGAGGCTGGAGCAAGGCATCGAAACGTCGGCGCTTTGGGAGCTGATGGAAGGTGGGGATATGTTCCAGTTTGACACAGGGCTAGCCATGAAAAGCGGTATGCCGGACTCCGCGGAAGTGAGTAAAAACCGCCGCTCAGCGGAGTAAAACCGCGGGTGGGCAACT # Right flank : GACAACGCCGCGCGGCACACCACGGTTCGTGGGACATGCGGTCGCCGAGGGCCAGTTTCATCGGCCGGACTACAGGGCCACTTCGTACATTCTTGTTTGCTCCCGATCCGCACTGCGCGGAGGATCGGGCCATGAACGAGAACGGTGAGCGGTGGCGTGTGCGGTTCGACGCCGAAGTGACCTTCAGCAACGGCGGTGGCCTTCAGACTCAAGGATTTCGACTGGACGTGTCCGGGCCGGATATCGGCGATCGCGAAGTGGCCGATTTGTTCGTCCGGCAACTAGGGCTGCTGATGGTGGACGACGTACGGATCACTGGGCGCGAGACCATATCGGAGCCGCACAAGGGAACACGGAACGCCGCCGACTCCCGGGCCGCCCCCGGCCCATACGGTGCGGCCGACCGCTCTGTCATCGAACTCAGCCACACCGTCCGGCACGGCATGATCACCTACCCCGGTCTGCCCGGACCCGAGATCAGCGACCACATCTCCCGGGAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCTCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 257231-258538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000002.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 257231 29 96.6 32 ............................T TCCGGGGCACCCTGGACGATTGCCATTCCGTC 257292 29 96.6 32 ............................T CACGCGCACTGGCCAGACACTCTCTGACCTGG 257353 29 100.0 32 ............................. AGGCTGCTTGGCTGCACACACAGATGCAGGCA 257414 29 96.6 32 ............................T CCAGTCGAAGATAGGCGAGATGATGCGGTTCC 257475 29 100.0 32 ............................. GTTCGACAACCCGATCGATCAGCACCACTACG 257536 29 100.0 32 ............................. ACTGCGAGGTGGTTCCAGGCTGACGACGGCGA 257597 29 100.0 32 ............................. GGCATCAGACGCCCATCCGGATCGGTCACGTC 257658 29 100.0 32 ............................. CCACCGCTCGTCTCCGGAAGAACCGGACCCGC 257719 29 96.6 32 ............................T CACGGAGACGTGGCTCCGGCGGCACATCAAGC 257780 29 100.0 32 ............................. TCGTGCGCCACGGCGAGGACCCCGGGGAAGTG 257841 29 100.0 32 ............................. ATCAGCTGGCCAGCCATGCGGCGGCAGGGGAA 257902 29 100.0 32 ............................. AACCCCGGCAGCATCGTGTACGGCGGGGAGGG 257963 29 96.6 32 ............................T CAGCAGGCGGCGGTGGCTGCGTTGTGGTCGCA 258024 29 100.0 33 ............................. GTCGTCCCGTTCCCGTCCGGCACGCCCCGGCCC 258086 29 100.0 32 ............................. TCGGAGTTGAGAGCCGTACGCATGGCCATGCG 258147 29 100.0 32 ............................. TCGCGCCGCTCTACACCGATGACGTCCAACTC 258208 29 100.0 32 ............................. TATCGCCGGGGTCGTTCGGGTCAACGTCGACC 258269 28 93.1 32 ................-A........... TTGTGGCAGGACGCTGACGTGTACGTGGCGTT 258329 29 96.6 32 ............................T CACGTGGAGACACTGGCCGCAAACGTAACCAC 258390 29 100.0 32 ............................. TCACCCACACTGCCGTCCGTCGTAGTGACCGC 258451 28 93.1 32 .................-.........T. GGCGGGCAACGTGGGAGGCGACTCGTGGGCGC 258511 28 75.9 0 ....-....C....C....C.CC..C... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.3 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GACTCCCTCAACATTGACGACGCCGACGACGGCACCCGCCCCACGCACACCGCCCTACTGGCCGCGGGCATTCCCATCGTGGAACATCTGCGCGGTCTGGAACACCTCCCCCCGAACGGCTTCCGCTTCCACGCCGCGCCCCCGGCCATCGAGGGCATGGGCACGTTCCCGGTACGGGCCTACGCGGTCGTCGGGAGCAGTTAGCGGCGCTGGACGGACCACCGAGCGGGAGGTGGCGAACGCGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGCGGAGGATCGCCGAGTTTGCTGCGTGGGACGCGTGGCCGCGATGCGGGTCGGCGCGGGGTGTCGGATGGGTGGTGTGATCGGTTACGTTGTGGCCTCTTGTGCCGGTGCGATGATCGGGGACGGCTTCTTATTTGAGGGATTTGCGCAGTATGCCGGAATTTGAAGAAGTGAGTAAAAACCGGGGTGGCGCTCGGTAAAGCCGCAGGTCGCGAACT # Right flank : CAGGGGGCCAGACCGAGCCAGGCCGAGCCGGCAACCTCACCGTCCCCGCGCGTGCAGCTGGCCGAACTACGCGGCCCCCTCACGGTGCGGAGCCGGTGCGCTGGCCGGAAGTCGGAGACCGGGGCGGGCAGCGTTACGGACCGGACCTGGCCTGGCTTGGCTTTGCCTAGCCGCCGGGGTGGGCGCCGATCCCCGGCCGGGCGGTGCCATGGTCGCTTTCTGAAGCCGGTCCCCCCTCCCCTTTCCCGGCGAGGGAAATACTTTTCGCTTCCCTTCAACGCGACGCGGTGCCGCCGCGTATCCCCTGGTGACTGCACAGCCACCGACCCAACAGAGAACGCGAACTGGTTGGAGAACGGCACATCGCTTCGCATGCAGCGTTCACCCTCAGCACTCTAGATTCAGCATTCTCCGGATTAGCGCCTCAATAGCGAGCGAAACAAAGCCGGTGGCTCTTCTGATCGGGTCCCGGGGTATGGCGGACGTCTGGTGACCAGGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 580966-580446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000002.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 580965 29 100.0 32 ............................. TGCGGCGGAATCAGCCCGTGATTCGCCGCAAT 580904 29 96.6 33 ............................T GGCCATCAGGACCGCCAGGCCCCAGGTGAGCCA 580842 29 100.0 32 ............................. GCGGGCGCATCCGGTCGGCTCCAGCGGGGGTC 580781 29 100.0 32 ............................. AGCGCGTCCGTGGCGACGGGCGTGTGATGGGG 580720 29 100.0 32 ............................. CTCAGGTGGATGAGGGCTGGTGGCCAACAGAC 580659 29 96.6 33 ............................T TCAAGGAACGTCATCTCTTCGTCCACGTGGTCG 580597 29 96.6 32 ........................G.... CGGTCCATCGACGCCGTGCTGAAGGAGCTGCC 580536 29 96.6 33 ........................G.... TGGAGCTGGCTCTCCCCCACCCGGAAGTTCTTG 580474 29 93.1 0 ........................C...T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGATCCC # Left flank : ACCTACTCAGCCGCGGCGTCCAGGCATCTCAGGCCATCACCCGCGCCGCGAAGACGGTCGGCGGAGGAGGAGGCGGCACCGGAGCCCTTGCCAGCGCCGGCGGACGCCACCCCGAACACCTCGCCCAGGCTCTTGCTTCCGCAGCCGAGGACGCCGCCACCTTGCTCGGCGACCGATAACGTCACCCCTAATCCCGTTCGCCGTACCCGCCGTCAGCCTTGGCGCTGTATACGTTGGGCCCAACGGAAAACTGGGCAGTGCGTGCGGGGCAGCACTCCCAGGAGACAGCGCCTGGCGACATCTCCTCGCGGCGAGGCAGGCGAAGGACAGGTAGCCGGTTGGGCACGGTTCCTGGCTACATGCGCCGGCAGCACAGTCAAACACGGCCTAGTCAATGACCTGCGAGAGGCGAGGAGATGAGCGGCTTGCGCGAAATGCCGGAGTTCGAAGAAGTGGGTAAAAACCGGGGTAGCGCGCGGTAAAACTGCTGGTCGCGAACT # Right flank : ACCCAGGGCGTACATCAAAACGATGACGTCGGTGGTCCCCGCACCAACAGGGCAAGCCCCCACCATCGTCGGCCGCTCACCAGCGACAGCGAGCGGCCAACGGCATACGGCATACGGCATACGGCATACGGCATACGGCCAGCCCATACAGGGTCAACGCGCAGGCCCACCAGCCTACTTGCGTCGCTCAGCCCGCGCCAAGGATCACCGAGCGGGTCAGGTTGCGCGGGTTGTCCGGGTCGAGGCTGTGGCGGTCGGCGATGGCTAGGGCGAGGCGCTGCACTCGTACCAGCTCCGCCAGTGGGTCAAGGCCGCCGGCCACCCACTGGGCACCGGTCTCCCGTACCTGGTCGGCCAGGCCGTCCGGCGCGGTGCCGAGCATCCAGGTCGCGGTGCCCTTGGTGGTGATGCTGATCGGGCCGTGCCGGTACTCCATCGCCGGGTACGACTCCGTCCAGGCGAGGGCCGCCTCGCGCATTTTGAGCGCGCCCTCGTTGGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGATCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 223542-223814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000014.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223542 29 100.0 32 ............................. GTGTTCGATGAGTGGGGAGTATGGCAAAAGCA 223603 29 100.0 32 ............................. CAGGGCCTGGGCAGGAAGATCCACGACACCGT 223664 29 96.6 32 ............................T GACGGGCCGCCGACATGGCTCTTGCCCGTCCA 223725 29 100.0 32 ............................. GCAGGCGAACCCGTAGACCGCGTCGTCATCGT 223786 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCGCCGGCACGGCCGCCGACGACACCAGCCGCCGTGAGGGCGGCCAGCGCGGCCACCACCTGCCGTCGCCCGGGCAATGGACGCGCGGTCGTGCTGTTCACGTGTTGGTCCTCGCGATGTCATTCCAGGGCAGCACCTAGGTCCCTGGGCTGCGCTCGCGTTAAGGCAGACGGTGCGCGGTGCGCGTTGGTTGCCCGGAGCGAATGATTTCGGTGGTCACAAGTTGATCACTGTGGGGTTGGGGTCGGGGTGGGTTGGGGAGCGGTGGCTTCCGGTGCGGGGGGCTGGGGCAACTTGGGGTGGGGTGGCGGGGGTTGGGGGTGTGGGGGTGTTGCGGTGCGGGGGGTGGTTCGGGTGGTGGGTGCCGGGGGGGGGGAGGGTGGGGGTGGCGAGGGGGTGGATGAGATTGGGCATATGGGGCGGTTTGCGGGAGATGTCGGAGTTTGAAGAAGTGGGTAAAAACCGGGGGAGTGCGCGGTAACGTCGCAGGTCGCGAACT # Right flank : CGCGGTTGCTCAGGTCTTCCCGGCAGTGGTGTCTCGCACGGGCCCTGGTCATGGGGCCGGGACCTGTGCGGGCGTGCATTACCTGCCGGGTCGTCTGCTGTTTGTGCGTCGTGGTGTTCGTTGGTTTAGGCGGGTGAGGGTGCGGGTGTAGTGGTGGGTCCAAAGGTGGTTGATGTGGGTGAGGGCGGTGGTGGCGAGGAGTTGGAGTGCGGGTGTTGCGGTGGGCAGGCGGAGTGGTGGTTCGTTTTCGCAGAGGTCGGCTGTGCCGAAGGTGGAGACGTGGAAGCGGGCGTGGCCGCTGTGGGCGCGGTGGGTGGCCATCCACACGTCTACTTCGGCGATGGTGAGCCTGTCGTCGGCTTCTGCTTCGCATTCGTCGCCGTCTCCCAGGCAGAACGCGGCGTAGCCGTGTCGGTGGGTCTGCCAGTGGCGGGGCAGGGGGATCATGGTCGGTTTTCCTTTCGCGGTGGGGTGGTGAGGGCGGCGTGTAGGGCGCGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227174-227507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000014.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227174 29 100.0 32 ............................. CCGTTGCCGAACCACACGGCGGCGCGGTGAAC 227235 29 100.0 32 ............................. GGGCCGCGAAAACTCTTGTGAGGGTCGCCCGC 227296 29 100.0 32 ............................. CACCAGCCGCGCCTCCCACGCCGCCACCTGCC 227357 29 100.0 32 ............................. GGGCGAGTGATGGCGGGCTGGTGGATGCCACA 227418 29 100.0 32 ............................. AAGCGGCGCAGGATCGAGCAGTTGGCGCGCGG 227479 29 93.1 0 .....................A......G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TCGGGACCTGGGTGATGCGGACCGGGCGGAAGCTCACGCACGAGTGTCGATCCGCTCGGCGAAGACCCAGAGCCGGGCGCGCCGCGGCGCGATGTCTCAGGCAGCATTGTCGGCGGTTCACTTGCAGCGTCGTGACCTGGAAGCCGCGCATGCGGCGGGACTGCGGACCATCAGTCTCGCCAAGCGGGTGAAGTCGTCGCGATGCGTCGAAGCGGTGCAGGATCTGCACCGCCGTATGGCGCCGTATGGCGCGCATCGTCTCGTCGCTGATTTCCAGGAGCGAGCAAGGGAAGTCGTCGCGGTGGTATAGAACGGGCGCGTCACCGGGCTGCGGTTCGGGAGGAGTTCGTGGTTGCGGCGTGCTCGGCAGCGTGGTTGTCCACAAGCTGGGGATGGAGGCGAGCGAAGTGCTTAGGCTGAGGGATTCGCGGCGAATGTCGGAGTTCGAAGAAGTGGGTAAAAACCGGGGTGGCGCGCGGTAAAGCTGCTGGTCGCGAACT # Right flank : GAGATGGCAGGCGCGGTGATCGAGGTGGACGGTGTGGGCAGTAGCCGGAACGAGTGTGTAACCCCCCTGCGGGGCGACTTCCTAGCGACAGCCCGCATGGGCGCAGGGCTACTGCGGGAGCCCGCGGTGGCCGCCAGGTGGGACGAGCCCAGCGCCCTTCCGGAGTTCAGTGTGGCCGGGCTTGCGGGGCATTTGGCGTACCAGGTGCTGGCTGTTCCGGAGATCCTGGCGCAGCCCGTGCCGCAGGAGCCGGTGGTGCCGCTGCTTGAGCACTACGCGCGGGTGGAGTGGATCGGTGCGGGCGTGGACGAGGAGATCAACGTCCGTATTCGGCGCGGTGGCGAGCAGGCTGCGGCCGGGGGAGCGGAGGCGTTGGCCGGGCGCATGGACGTCGCCGTAGGCGAGCTGGGCGCCAGCCTCGCATCCGTCGCGAACCGTCCGGTGCGTATCCCGCTGTGGGGTTCGTGGTCGCTTGCTCTCGACGACCTGTTGGTCACGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 228399-228732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000014.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228399 29 100.0 32 ............................. GCCGCTGGCACATGGATTGCCACATTTGCCCG 228460 29 100.0 32 ............................. TTGCGGCGCGTTTCGATCAAGGGGGCGCAGTT 228521 29 100.0 32 ............................. GAAGCATGGTGTGGCCCACCGTCGTAAGGAGC 228582 29 100.0 32 ............................. CAACAGAGGGCATGGGGCACCTCCTCGGCGCT 228643 29 96.6 32 ............................T CGGCCGAGCTCCGCCATGACACGCGAGGGCGC 228704 29 82.8 0 ...........C.........C.AA...A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGCCGTAGGCGAGCTGGGCGCCAGCCTCGCATCCGTCGCGAACCGTCCGGTGCGTATCCCGCTGTGGGGTTCGTGGTCGCTTGCTCTCGACGACCTGTTGGTCACGCGCATGATGGAGCTCGCGGTGCACGCGGACGATCTGGCGGTAAGCGTGGAAATCGAGGTCCCGGCCCTGCCGCCCAGGGTCGCCGAAACGGTGATCGACCTATTGTCCCGGCTTGCAGTGCGCCGCCACGGGGTGACGGGTGTACTGCGTGCGCTGAGTCGGGCGGAGCGGGCTCCGGGGTCCATCGCGGCATTCTGAAACTGCGCGGCGACGAAAGGGCGCATGGGGCTCGGTCGAGCTTGTTTCCTGGCTGCGTGGGGCGGTGACGCAGTCGCTTGTAGCCAGCGAAGCAATTGGCCAGGAGAGAGGAGTGGGTGGTTTGCGTAAATTGCCGAAGTTTGAAGAAGTGAGTAAAAACCGGGGCGGCGCTCGGTAAAGCCGCAGGTCGCGAACT # Right flank : ACAGCACCAAAAGGAATCGGATCTCGCCCCGCGGAGGCCGCGGCGGGGCTACGGTGACGCCATGGCCAGAGCGGCGACGGCCATCCGCGTTGCGCCGCAGACGCGCGGCCATCTCGCCGAGCTTGCGCGGGAGCGGGGCCTCAGCGTGGGGCGGTACGTTGAGTTGCTGGCTCAGCAGGCCACCGAGGCCCAGCGCGCTGAGCGGCTTGCCGCTGACCGTGCCGTGCTGCGGGATCTGACCGGCTGCGGCCTCAGCGACGCCGACTTCGACCAGGCCCCTGACGTCCTCCGCCATGCTTACCGGCTGGCCGCCGCGAAGGTGCGAACCGCTTAGCCGCGCCCCGTCTCATCCCCCGTCCGAGCGGCCTTGACGCGTAGAGCAGCGCTACCGGTAGTGAGCGGCTGAGGAGCGCGCCCATGGAAGGCCGCATGACCGCCGAATCGCTGCACCCCTGGCCGGTGCCGCCGCCGGACGCCTACACCGTGGACGATCTCTTCGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26146-25935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000023.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26145 29 100.0 32 ............................. TCGCCGCGCGCCTGGTCGCGCTGGAAAAGATC 26084 29 100.0 32 ............................. GGCGCGCTGTGGACCGAGGTCAACGAGGCGCT 26023 29 96.6 32 ............................G GTGAGCGGCAGGCGGCCGGTGTCGAGCTGGTC 25962 28 86.2 0 ....................AT...-..T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Left flank : AGCAGACCGAGCGGCCGTACCGGCGCGCGTTCGTGGTGAGCCTGCTCAACCCGAAGGCGATCTTGTTCTTCATCTCCTTCTTCGTGCAGTTCGTTGACCCGGACTACGCGCACCCCGCGCTGTCGTTCGTCGTACTCGGCCTCTGGGCGCAGCTCTTCAGCATCACGTACCTGACGATCCTGATCTTCAGCGGCACGTTCCTAGCGGCGACCTTCCGCCGCCGCAAGCGGCTCACGGCAAGCCTGTCGGCAGGCGCGGGCGCCGCGTTCCTCGGCTTCGCGGCGAAGCTGTCGCTGGCGAGCGCGGGGTGAGGCTTGGTGTCGGGGGAATGCGGGCCGGGGCGCTGTCTTGCCGGGGTGGTTTTCTTCCTAATTTTTTCCTAGGGGTGGCTTGTTGGCCGAATCCGCAGGGAGAGCCAGGCGGTTGCATGCGCTTTGTCGGACTTCGCGGAAGTGAGTAAAAACCGGGGTGGGGCGCGGTAGCGTCGCAGGTCGCGAAGG # Right flank : TAACCGCTCCCGGCTCTGGCTGCTTCTCACCCGTGGTACGTGGACCAGGCAGGCAGAAGACCGCCGTTGCGCGGCCCGCGCTTACGATTCCGCTGCGGTCTCAAAGGCGCGGAATCGGTTGCCAACCGGGCGTACATTGCGAGTGTCAGCACGCAATGGGGAGTCAGCATGCCCGACACCACAGACAAGCACCCGGGCGCTCGCATTCGCGAGATCCGCCTGATTCGCGACTACACCCTGGCCCAACTCAGCACGCGGTCACACGTTTCCACCAGCCAACTCTCCCGCGTCGAAAAAGGCGAGCAGCCCGCCAGCCCCTCGGTTATGGCCGCCGTAGCCCGTGCGCTCGGAGTGACTCTCTCTGTCCTGCACGGCCAGCCGTACATCCACATGCTTCAGAAGGACCAGCTCGATCGACTGCTGACACCGATCAGCAGCGCCCTCGACGCGTGGGACATCCCACCGGACGACGACATTCCAACGCAGCCGCTGGATGAGGT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 170473-171050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000003.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 170473 26 69.2 37 .T......AC........GG...ACG TGGACGAAAGCGCCCAAGACAGCCACATGGGGACCAT 170536 26 76.9 35 T.......A....A.........CCG TGCGTTCGGCATACGCCACGACATCCGCTGGGTCC 170597 26 92.3 35 .......................C.A TACCCGCGGAAGCTGAGGACACCTGCCGGGGGACC 170658 26 100.0 35 .......................... GAGTGATGCGGCGTCATCGTGAGGGTCGGGGGACC 170719 26 88.5 35 .......................CAC GTACGACGAGGACGGCGAGGTCCTGGACGAGGGAC 170781 26 96.2 34 .......................A.. TGGAGAACGGGCGCGGGCGCCGACAGGCGAGGAC 170842 26 96.2 34 .........................C CGTCCGCCAAGATGAGACGGGGCCACGCAGGGAC 170903 26 96.2 34 .........................C GAAGCAGGCAAGCGACACCTACGACCTGCAGGAC 170964 26 100.0 35 .......................... CCAGGCTGGGGAGAGCGGCTGCGCGTGTCGGGACC 171025 26 96.2 0 .......................A.. | ========== ====== ====== ====== ========================== ===================================== ================== 10 26 91.2 35 ACCCCCGCGTGCGCGGGGACCATGGT # Left flank : CGTCCACCACCGCATCGGGGTCGCCCGTCATGAGGATGCACAGCGTCTCGTACGGGCACGGATCGGGCGCCACCGCCAACGCCTCGGCAACTTGAAGCGCAAAGCGGTCAAGCCGTTCCACCGCCCGCACGACCGACGCCCGGGTACCGGCCCGAGTGGCGAGCTGGGTGAGGTCGTTCGGCACCGGATTGAGAAGGTCAGGACGGGCCCGCAGCAGCGTCGCGAGCGCGCCATCAGGGCGTACCCGCAACTCCTCAGCGAGCGTGCGGGGCGCCCCGCGGTTGCTGCCGCTGCTGCCGCCGCTGCGCCCGTTCTCTCGGGTCATCCGCGCCGCCCGATCCCGCGAGGTGGTCATTCGGACCACGGTACCGGCTCACCGCCCCACACCCCCATGCGTCGTGCCAAGCCGCTGGGGGCGGCTTGGCACGGGTGGGGGCGGGGGCTGGGGGGCGGGGGCTGTCGCGGGGGCTCGGGGGGTGTGGGTGGTGTGGGTCCGGGGT # Right flank : TTCGTGACCTGCGGGTTTACGGCGCGGGAAGCCGGTTTTTACTCACTTCCGCGGATTCCGGCATAGCGCTCGTACGGCGCATATCTATCACGGTCCTCCCGTCAGATCGCTCCGATGGAGAATCTACCGCTCACGCCTCGCCCTCAACGCGTCACCCGCACATGGCGCCCTGAGGTCAGCGCTCGGGCCCTGCCTCGTATGGAACGGGCCAGGTGCGAGAGTTAGGCGCGGCGTCGTCCCCCGATGCGGGCAGTGTTGGTGGTGGCCTGTTGGGCGCAGGTTGGGTGCATCAAATACTCGCTGCCGTCTGTGTCGATGCCGGGGGCGGCTTGGTCGCGGTAGACGGGGCCTCCGCATACGCAGCGGATGGAAGCTGGCCGAGCAGTCACTCCCACCCATCCAGTCCGGTTAGCACTCGCCCCAGCAGCATCGAACCGACCGTGTGATCCCGGGGCCGGGGTTCGCCGGCCTCCAGTAATGAGTCGCTGGTTGGCTGGACG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCCCGCGTGCGCGGGGACCATGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 178754-178603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000003.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178753 29 100.0 32 ............................. CGATGAGGAAAAGCCCAAGCGCACGCGTCGGA 178692 29 96.6 32 ............................C ATCATTTCCTTAATTCGTTTTGCTTAACTTAT 178631 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 ATGGTCCCCGCGCATGCGGGGGTGGTCCT # Left flank : GCCGGCCCCGGCCCCCACTGGGTTCGCCCCGCGGGGGCGCAGGGCAGCCCGCGCTACCTCGCGTGCGCGATCACTCTGGCGGGAGACCTCGCCCCCGCAACCCTCACCACCTGCGGCCCCCTCCCCATCCGCTGCGTATGCGGCGGCCCCGTCTACCGCGACGAAGCCACCCCCGGCACCGAAACCGACGGCAGCGAATACCTGATGCACCCGGCCTGCGCCCAACAGGCCACCGCCACCAACACCGCCCGGGTCGGGGGACGACGCCGCGCCTAACTCTCGCGCCTGGCCCGTTCCATACGAGGCAGGGCCCGAGCGCTGACCCCAGGCGTGCCATGCGCGGGTGACGCGTTGAGGGCGCGGCGTGAGCGGTAGATTCTCCATCGGAGCGATCTGACGGGAGGCCCGTGATAGATATGCGCCGTACGAGCGCTATGCCGGAATCCGCGGAAGTGAGTAAAAACCGGCTTCCCGCGCTCTAAAGCCGCAGGTCACGAACT # Right flank : ATTCGAGCACCGCTCTCGCCGCGACCCTCGCCGACGCCGAGGCCCCTGGCCACGACCCCACCACCCTGCTCACGGAATCCGCAGCCCACCGCGAACTCGGCACAGCCGAACCCAGCAGCGAAGTTCTCGTCTGGCGCCTGCGACGCGCCGACGACCTGCCCGCCGACGCGACCAACCTGCCCGTAATCGGCGGCCCGGCCACCTCCCGACCTACCTCACGACCGGTCGGACGGTCCGCTAGCCCTCAAGACCTGCACCACAGGCATCGATAGGCCCGCTCCTGCAGTTGGGTGCCAAGCCCAGAAGAAGCGGCTGAAGCGACACAGTGCAAGGCTCCGCCGATTCAGCCGCTTCCGGCCTACTGATGCACGATGGGCTGGTGGCGAGGTCAGGCCAGTGTGGCGTCCAGGTGCTGCTGGACCGGTTCGAACAGTCCGTACGGGACGTACTGGGGAATGTCGGCGTGGGCGACCCAGGCGAGTTCGTCCAGCTCTTCGGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGGTGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 220906-220633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000003.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220905 29 100.0 32 ............................. ACGAAAATCAGGTTTCGAATGTAGCTTCCGAC 220844 29 100.0 32 ............................. TTTTGCGCCGCGAGCTTGTCCTTCGTCGCGAG 220783 29 100.0 32 ............................. TCCGGTGCGTCGCGCGCATCCGGCCGCTCCTC 220722 29 96.6 32 ....C........................ GCGCTGTGCACCGCCCCGTGATCGGTCGGGCT 220661 29 86.2 0 .............A.......C.....GG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTTGCCGCTGGGCGAGGTCGCCGACCTTGCCCAGATAGTCATAAACGAGCTGATCGCTCTCGATCCCCACCAAAACCCCAGCGAACTCGCAATGTTGGCGCCCCGGACGGTTCCGACGTTACCGTTCTATCCGCTCTCCGGCGGCTCAGCCGCACCTCTGAGCTAGCCCGTTTTCCGCCTGGGGCGGGCTTCGGCGCGCATGCGGCGGGGCTTCGGCTGGGCTGGCCCGCGCGCCGCGCGTCATTTCTTGCGGCAGAGCGGCGGCGGGCCGCAGCCCGACAACTCCCGCATAGTGGGCCGCGCTTACCTGCGGGGCCCCGGGCGGGTAGACGGGTGGGAGCATGGGCGCAGGCGTAAGGCGAGCGAGCGCACATGGGCGCGACGTTGACGCTGAGCGCGGGAGGGGGCGGGGCGGTATGTCGCGGTGGGGCAGTATGTCGGAGTTCGCGGAAGTGGGTAAAAACTGGGCTATGGCGCGGTAACGTCGCAGGTGGCGAACT # Right flank : ACTGCTTGGCTCGGCCCTCTTCGTCTGGGCCCTCGCACCACGCTGAGGACTCACCCCATGCCTCTCATGGAATCATTACCCTGGCGGGTATATCCCTGGAAAAGGGGGCTCAAGTGCCGGACTTTCATGCAGAAATGACCGCAGACATGACCTTTGGTGAGCGTGTCCGCGACCTCCGTGAACGCCGCAACCTGACACGCACCGCTCTGGGCGGACTCGTGGGTCGCGGGCCCGACTGGGTGAAGAAGATTGAGCGAGGCGAGCGCGACTTACGATCGCTGGTGCTTCTCCTGCGCCTGGCCCGCGCGCTGGGATGCCAGGATCTCGCGCAACTCACGGGCGGGGCGTCCGTACCGGTGCTCGACGGCGGCAAGGTGACTCACCCAGGCGTGCTAGCACTTCGGCGCGCGATAGTTGAGGCTCCCCTCGGCGCGTTTTCCGCCGACACCGACGCCGCACTTGGCGACATCAGCCCCGCCGAGTACGCCGGACGCGTCCAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 279744-279105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000007.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 279743 29 96.6 32 ............................T CTCGACAAGCTTTTTGCGATCGCGGGCATGCT 279682 29 100.0 32 ............................. TCGATCACTGACCCATCATCAGTGCAGCTCCG 279621 29 100.0 32 ............................. TCCACGCAGCCACCCGCGATGGGAACTACCCA 279560 29 100.0 32 ............................. ACCATCTCGCCACCTTCGGCGGGCCCCGGCCA 279499 29 100.0 32 ............................. TGCGTGTTCTTCGCCCTCGAACCCAACGAGCT 279438 29 100.0 32 ............................. TGGAACGGTGGCGCAGCGCTCCGCGGCACCCG 279377 29 100.0 32 ............................. AGCAGCCTTGGGTGCGGGAGTCAGGCGCTTGG 279316 29 100.0 32 ............................. CTCCTCAGCCATCTCTTGGGGTAGTTCCTTGG 279255 29 96.6 32 ............................T GCCGGCAGTTGGGGTGCTGGAGTCCGGCCCGG 279194 29 100.0 32 ............................. AGGCCGTGCGCGCGCATCGGGCCCGCCATGGC 279133 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 ATGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCTTCAAATCATTGGCGAGCCCTTGAGGTAGTCAAGGTGGTAGAGGCGCGACAACTTCCCGAGGCGTCGGGTCTCCGTGAGGCTTACCAAGAGCTTAAGCGCTTCTAACGAGGCTCGTTGTTCGGCCAAGAGTGGCGAGCCTTGTATTATCCGCGCCGCACGATGCTTCCGTACTCACATGGAGCACAGGCGAATCTTTGAGCGCGACGAGCCTCTCGCATTGGGCGCATCGCCCCCGTGCGCAACCAACGGCACTTAAGGCCGCCGGCCCAACACCCGAGCGTGACAGTCAGCCCATGGCAGAATGCACATGGCAGGGCGGAAGTTATAGAAAAAGATGGTGAGTTCGTGGCCGTGGTGCGCTCAGCATCGCGATTGTCCACGAGCCAGTGCAGCAACAAACGAAACGCCTAGAATCAAGGGGTTTGCGCCGAATGTCGGAGTTTGAAGAAGTGGGTAAAAACCGGGGTCAGGCTCGGTAAAGCCGCTGGTCGCGAACT # Right flank : CTGCTGCTTGGCCCCGGATGCTTCCAGGGCAATGATCAGGGCGCTTCGTACGGGCAAGCAGACGTAAATGATGAAGGCGGACAGCCGACAGCGGTGGGTGGCGTCCAGCTACAGCGGAGCCAACGGCGGGCAATGCGTCGAATGGGCCCCCGACCACGCACACACACGGGCTCGTCCCAGTCCGAGACAGCAAAAACCCGCACGGTCCGGCGCTAGCCTTCGAGGCGTCGGCCTGGTCGGCGTTCGTCGCCGGCATCAAGGCGGGCGAGTTCGGAGTCTGACCCGCCAACGCAAAGAGCCCCGCCACTCCTCTGTTAGGGAGTGGCGGGGCTTCGCGTCATAGCACGCGCGATAACTCCCGCTGAGCGTAAGCGTCCAGGCAGGTTTTCCACGCGAGACGGAAGATGAGACCGAGAAGAGGAGTACGGCAATGAGTGAAAAGTGGTCCAAATCCTCCTACAGCGGCTCGAACGGGGGGCAGTGCGTCGAGATTTGCACGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : ATGGTCCCCGCGCGTGCGGGGGTGGTCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283657-283139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJL010000007.1 Streptomyces zagrosensis strain CECT 8305 Ga0436951_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283656 29 100.0 32 ............................. AGAGCAGGCACTCGTAGCGGGCGCGCGGGACG 283595 29 100.0 32 ............................. TCTTCCCCCTTGTCCCGGATCTGCTGGAGGGC 283534 29 100.0 32 ............................. ATCGTCAGCCTGGACGAGAACGGCCGCGGCTG 283473 29 100.0 32 ............................. CGGAAAGGACTGCCCGGTGACCACGCCACCCG 283412 29 100.0 32 ............................. GCCCGTACAAATAGCCGGAGTTGCACGCGCGG 283351 29 100.0 33 ............................. GGGGCCACAAAGGCGCTGGTGGAAAGTTACGGC 283289 29 100.0 32 ............................. GGAACCTGCCGCCGTAGTTGTACGGGGGCATC 283228 29 100.0 32 ............................. CAGGTCTTCTTGTGCGCGTCCTGGATGCCCCG 283167 29 79.3 0 ..................T....ACCA.T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTACTTCCAGGGCAACGCGATTACCGGCCCCCTCCTGATCCTGGCCGCGTGGGCGCTAGCGGGCACGATCATCACGCTGACCCTGGCAGTACGCCGCAAGGGCAGGGAGGCCGCGGCCTTGGGGTAACGCCGGGCGCTGGGCGCTTAGCCCTTGGGGTTGGGGGTTGGTTGGGATTGGGGGCTGGGAGCTTGGTGTTGGGGGCTGGCTGGGCTTGGGGCTGGGCGCTGTGTGGTTGGGCGCTGCGTGGTTGGGGCTGAGGGCTTGGGGCTGAGTCGGGCTGAGGTCTCGGGTCTGGGTTCTGGTCTCGCTGTTACGGGGCCTCTGAACGTCCCCCGGCGCGACCTTCATTGCCGATCACCTGGCTGCGGAGGGGAGGGCTGGCATAGCGTGTGACGAACATGCCGACGGCTGAGGAGTGACGGCTTTGCGAGCTATGCCGGAATCCGCGAAAGTGAGTAAAAACCGGGTCAGCGCGCGGTAACGTCGCAGGTCACGAACT # Right flank : CGCGGTTGCCGAGGTTTTCCCGGCAGTGGTGTCTCGTATGGGCCCCAGCCATGAACCGGGGCCCATGCGGGTGTCCGCTACCTGCCTGATCGCTTGGTGTCTGTGCGTCGTGGTGTTCGCTGGTTGAGGCGGGTGAGGGTGCGGGTGTAGTGGTGGGTCCAGAGGTGGTTGATGTGGGTGAGTGCGGTGGTGGCGAGGAGTTGGAGTGCGGGGGTGGCGGTGGGCAGGCGGAGTGGTGGTTCGTTCTCGCAGAGGTCGGCTGTGCCGAAGGTGGAGACGTGGAAGCGGGCGTGGCCGCTGTGGGCGCGGTGGGTGGCCATCCACACGTCTACTTCGGCGATGGTGAGCCTGTCGTCTGCCTCGGCTTCGCACTCGTCGCCGTCTCCCAGGCAGAACGCGGCGTAGCCGTGCCGGTGGGTCTGCCAGTGGCGGGGCAGGGGGATCATGGGCGGGTTTCCTTTCGCGGTGGGGTGGTGATGGCGGCGTGTAGGGCGCGGGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //