Array 1 31-6598 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRC01000033.1 Streptococcus iniae strain QMA0190 NODE_32_length_24218_cov_73.2926_ID_5352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 .................................... TTATACCTCGGATTTAGCCAAGGAAATGTC 97 36 100.0 30 .................................... CTGTATTAGATGGTTTAACCTTGTTTGGTG 163 36 100.0 31 .................................... AAACTGCTAAGCAACGTATCGCAACCGAATA 230 36 100.0 30 .................................... CTTTGATATGGTCAACCTCTAAGTTAGTCT 296 36 100.0 30 .................................... TCCATTCATCACCTCGTACTTATATACCTG 362 36 100.0 30 .................................... TAGCAATTGCAATATTATATGTGCCTATTT 428 36 100.0 30 .................................... TGCGATCAGCTGGAGCTAGTGATAACGGAT 494 36 100.0 30 .................................... ATGCTCCTCTTTCTGAAGAAGCTAAAGCTT 560 36 100.0 30 .................................... TTTAAGTGTATAATAATAGTGTCAATATAT 626 36 100.0 30 .................................... TATATGTAGACGAATCATCTAACTTCAATT 692 36 100.0 30 .................................... TTCTGTGGTGGTTGTATAAAGCATGGTGCA 758 36 100.0 30 .................................... TTTACCCCAAATTCCAATATCTCCACGTTT 824 36 100.0 30 .................................... TGACGACTATACAAAGGGTCTGTTTAGAGT 890 36 100.0 30 .................................... CGTTCAGCCATGTTCCTGACAGGTTTTTTA 956 36 100.0 30 .................................... TGCTAATACTTCCACTGGTAGTTTAATCAC 1022 36 100.0 30 .................................... TGGGAGGGTTGCTGTTTATGATCCTGATAA 1088 36 100.0 30 .................................... GCTACGTTTTTTTGAGCATCATTAAACCCT 1154 36 100.0 30 .................................... ACTCTCATACGTTGCATCAACTTCGCATTC 1220 36 100.0 30 .................................... AACTTGGATCGTCATACGTTTAAATCCGAT 1286 36 100.0 30 .................................... TGCTATTTTTGCTTTTTCTTCCTCTGTCAT 1352 36 100.0 30 .................................... GACTACGACCGTAAGTTATTAATACCTGCT 1418 36 100.0 30 .................................... CATTAGCTATCACTGGTGACTTTGGAGAAT 1484 36 100.0 30 .................................... TTCCAGCTTCTGTGTTAACATCATGCTGGT 1550 36 100.0 30 .................................... AAAACAACTCAAGCCATCACCCCTACGGGT 1616 36 100.0 30 .................................... CGATCAAGTTAAAGAAACGTTTAATCGTAA 1682 36 100.0 30 .................................... AACGAAAAAAGGATAATAACTTCTACAGCT 1748 36 100.0 30 .................................... CATTCCCCATTATCACTATCAAACACGGCA 1814 36 100.0 30 .................................... AAATTATTAGATTTTTATCACAATGTGGCA 1880 36 100.0 30 .................................... GGACATTAGAATTTAAAGGTTCTCAGCAGA 1946 36 100.0 30 .................................... GCCTAAAGGCGTATCAATTAACCAGAGTGT 2012 36 100.0 30 .................................... TCGACTCTGAATCTAAAGGTAAAGCAGAAT 2078 36 100.0 30 .................................... TAAACGATTTTTTGCATATACACTCGCTGA 2144 36 100.0 30 .................................... GTCTTTCATAGCTTTATCTCTAATTCCCTT 2210 36 100.0 30 .................................... CTTCTAGACACGATAGAGAGACAAGATGAT 2276 36 100.0 30 .................................... AATCAAAAAATGGTCTAAATATGCTTTTGC 2342 36 100.0 30 .................................... TAGATGATGACCGTATGATGTTATGGTATA 2408 36 100.0 30 .................................... TATCGCTAGAACACTTATGACACCTACCAG 2474 36 100.0 30 .................................... TGTACTTAGATGTTATTGAATGGATAGAGG 2540 36 100.0 30 .................................... AACTTTAACGTTATTAGATACATTGGATAG 2606 36 100.0 29 .................................... TTGTCTGTAACAAATACACCAGTATCATA 2671 36 100.0 30 .................................... CCAACAAGTTTCAAATCTCTTTGTTCGGTC 2737 36 100.0 30 .................................... CAACAGTTGGTCAGCTATTTACCAATATCG 2803 36 100.0 30 .................................... ACAAAATATTCCGCATCTGTTAACAACAGT 2869 36 100.0 30 .................................... TATTCACAGACCCGATGCAGTAAGGCCATT 2935 36 100.0 30 .................................... TCATCGTTTCGAATTGCTGTATTAGTTCCT 3001 36 100.0 30 .................................... ATAGTCTTCTGACAGCGTTGCTTCATAGTA 3067 36 100.0 30 .................................... TAACAAGCCACTACTGCTTACATTTGGTAC 3133 36 100.0 30 .................................... AGAAAAAGCTGAAAAGACTGCTGTACTCGT 3199 36 100.0 30 .................................... ATTGTAGATATCCCATTCATCTCTTGTAAT 3265 36 100.0 30 .................................... TTGATGCGTTTCCCTTGGACGATTTCTGGT 3331 36 100.0 30 .................................... AGTTCGAAGCCAAATATAGGTCGTGATGTA 3397 36 100.0 30 .................................... AAATCAGCTATAACATGTTGCTCCTTATCT 3463 36 100.0 30 .................................... ACTATGGCGCAGACTGCAGTTGGTCTTATT 3529 36 100.0 30 .................................... TAGATGAAAGGTATTAAAAGGAGATTGTAA 3595 36 100.0 30 .................................... TGAGAGTAAGTCTTTTGCTTTTGAAATCTC 3661 36 100.0 30 .................................... AACAATAACTGGTGGAGCTAGCACCTTATT 3727 36 100.0 29 .................................... CCGATACGGTGACTTGGATAAAACCATAT 3792 36 100.0 30 .................................... ATATGGTGTCGAAACCTATAAGAGGTCTCA 3858 36 100.0 30 .................................... ATACTTAATTAAGTAGTCAGTAACATCAAG 3924 36 100.0 30 .................................... AGAACAGTTAGTTGTAACTGCGGTTAAAGA 3990 36 100.0 30 .................................... TATGTGACAGATTTTATTTACAGCGCAGTT 4056 36 100.0 30 .................................... ATGTAATATCAAAATCAGCCCCACCAAACA 4122 36 100.0 30 .................................... TCCGGTCTTTGCATAATAACCAAGCGACTC 4188 36 100.0 30 .................................... GGCAGAAGCGTTTGACATCGCAGCTATTCA 4254 36 100.0 30 .................................... TGGTGGCTCTGGATTGACACTAGATGACTT 4320 36 100.0 30 .................................... TTCCCTTCACCAACAAACCATATTGATTTG 4386 36 100.0 30 .................................... CTTTCCAAATTTTTGCCTCACACTTCGCTT 4452 36 100.0 30 .................................... CAAAATAGCAGTTTTAACGTTTCTATCTTT 4518 36 100.0 30 .................................... TAATTAAAAACAAAAAGCCCCAAATCCTTT 4584 36 100.0 30 .................................... AGTAATGGTTTTCTAAACCTTTTGATTGTA 4650 36 100.0 30 .................................... GTAACATCATAATTTTTAATAGGATATAGT 4716 36 100.0 31 .................................... ATTAGTAAATCAAACAGGGATATTCGAGGCT 4783 36 100.0 30 .................................... CCCAAACTTTACCAAATGACACCCCAGTAG 4849 36 100.0 30 .................................... AGCTATCGGGATACGGTAATCAAAGTTTTT 4915 36 100.0 30 .................................... TCATGTAAGAACATTTTTTAATGGAACTAA 4981 36 100.0 30 .................................... AAAAGGTAACGGAAATAACTTGTCATTACT 5047 36 100.0 30 .................................... CTCCCAAACTTTACCAAATGCAACTCCTGT 5113 36 100.0 30 .................................... TAATAATTGGACTCCCAAATTAATAACTTT 5179 36 100.0 30 .................................... TTTGCTAACATTGCTCTGGTTAAGTAATCT 5245 36 100.0 30 .................................... TGCAAGTTATTAGTGGCTTTATTTCGATGT 5311 36 100.0 30 .................................... TGCTTGGTATGCAAATGCATTAAACGGTCC 5377 36 100.0 30 .................................... TTAAATCCCCCTTTCTTAGCTATACTTGAT 5443 36 100.0 28 .................................... TTTTCGGATTTCTGCTTCAGTTAAACGT 5507 36 100.0 30 .................................... ATGTTACTAAATCTTTTAACACACTACTTT 5573 36 100.0 30 .................................... AAACCAGATAACAATCATTCCGTCACCTTC 5639 36 100.0 30 .................................... AGCAGCTAAAAACGCTCTGGAAAGTAAAAG 5705 36 100.0 30 .................................... CTATAAAAGGCGATGATGAAAAAGCTGTAA 5771 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 5837 36 97.2 30 ..........................C......... CTAAATTAAGATTTTGTACTAATGCTTTGT 5903 36 97.2 30 ..........................C......... TATTAATGTTGATAAGAAAACAGTTTATCT 5969 36 97.2 30 ..........................C......... CTAAGCGAACATTGGAACGTGCGGAAGTAA 6035 36 97.2 30 ..........................C......... GATACGTGTTATTTAATTTACGGAAATCCA 6101 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 6167 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 6233 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 6299 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 6365 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 6431 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 6497 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 6563 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== =============================== ================== 100 36 99.6 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AAGTAGATGCTAGACAGTTAAATAGGCGCAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 3415-3648 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRC01000032.1 Streptococcus iniae strain QMA0190 NODE_68_length_3703_cov_59.3295_ID_8942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3415 36 100.0 30 .................................... TCTTAAACTAGTGACACCACCACCAAGACC 3481 36 100.0 30 .................................... AAGATATAAGAAAACCCCTCACTAATCAGT 3547 36 100.0 30 .................................... CGTCTACTGTAATCCTCAAAGGTCTAGTCT 3613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : AAGTAGATGCTAGACAGTTAAATAGGCGCAGTTTTAGAGCTGTGTTATTTTGAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //