Array 1 217082-215418 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIK01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 3342 2017-SEQ-0266_2_length_668598_cov_75.5369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 217081 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 217020 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 216959 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 216898 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 216831 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 216770 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 216709 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 216648 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 216587 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 216526 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 216465 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 216404 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 216343 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 216282 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 216221 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 216160 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 216099 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 216038 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 215977 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 215874 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 215813 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 215752 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 215691 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 215630 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 215569 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 215508 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 215447 29 96.6 0 A............................ | A [215420] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234466-233340 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIK01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 3342 2017-SEQ-0266_2_length_668598_cov_75.5369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234465 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 234404 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 234343 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 234282 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 234221 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 234160 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 234099 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 234038 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 233977 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 233916 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 233855 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 233794 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 233733 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 233672 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 233611 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 233550 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 233489 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 233428 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 233367 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //