Array 1 4273-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHC010000083.1 Shewanella algae strain A41 A41_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4272 29 100.0 32 ............................. TTGATGGTGTTAGCTGGGCTGTTTCTGATTGC 4211 29 100.0 33 ............................. CAGGTAGTAGCGACAACACAACAAGCCCCAAAC 4149 29 100.0 32 ............................. CTTTCCTCTGGACTCTCAGCAATTCCTTCTGC 4088 29 100.0 32 ............................. TCCACGTTGATAACGCGAACCAGCGGAATAAC 4027 29 100.0 32 ............................. TTGTCGAACTATGTAATCCTTTGGGTTCATCT 3966 29 100.0 32 ............................. CGCTTTGAGCTGTTGCTTTCACGCACCAAGAT 3905 29 100.0 32 ............................. GGGCAAAGGCCGCACAGGTAGCAGGTATGGGC 3844 29 100.0 32 ............................. ATATTCGCTTCATCTGCTCGCCGCTGTTTAAC 3783 29 100.0 32 ............................. CGTGCGACCTGGTGCGTGACGGCATGGTGGGG 3722 29 100.0 32 ............................. CAGTAAGTTCAGCCCTAACCCAAGAGCCGACC 3661 29 100.0 32 ............................. CGAGACTGAACCAGGGTGGGTCGTGTCGGAAG 3600 29 100.0 32 ............................. CCGCCGAAGTGTACCAGTTTGACGACGAAACA 3539 29 100.0 32 ............................. CGTTGCGAGGCGTATCGCCGAACAGTTCGTCA 3478 29 100.0 32 ............................. TTGCTCGTGGCGTTCCATTCCGTCGCGTATCT 3417 29 100.0 32 ............................. CGCTCGACGCTGCACCCGCTGCGAACGCTGAG 3356 29 100.0 32 ............................. GGTGCCGGCACTATCAAGTTCTATCACTTCGA 3295 29 100.0 32 ............................. TCGCCGGCACTGATACAGGTGTATCGGTTCGC 3234 29 100.0 32 ............................. GAATGAAAGGGTTTCAGGCGGGAGGAAGATCC 3173 29 100.0 32 ............................. ACAGATGAGGAATGGGCAGCCCAGAGAAAAAA 3112 29 100.0 32 ............................. CCGTTACCGTCTGCCCGGCACGGTGTAGCGGT 3051 29 100.0 32 ............................. CATTATATGCTTCCATGTACGTGCGTGACGTT 2990 29 100.0 32 ............................. GATCACCCTGTGCAGCGCTGTACATCCGTGCA 2929 29 100.0 32 ............................. ACATGACGTTTAGTGTCTCGTTTTTTAGCGAG 2868 29 100.0 32 ............................. TCAAGTGTGCCCATCGGTTACGCCGGTAACAG 2807 29 100.0 32 ............................. AGAACCATCCTCTTGTAAACGTATCCATTCAA 2746 29 100.0 32 ............................. GGCTTGTCACGACGTAATGCTCGGCACCGGCG 2685 29 100.0 32 ............................. CCGGTAAAACCATCAACAGTGGTTCACTATCT 2624 29 100.0 32 ............................. GCCAGCCCAGCAAAATTGCTGACCGGACATAA 2563 29 100.0 32 ............................. CCGGTCACTTGGCACTGAACGTAACGAATCGT 2502 29 100.0 32 ............................. GTCTGATGGACGTCATGGTCGAGGGGCCGACA 2441 29 100.0 32 ............................. TGGTGAACCCGAAGAAACCGTACGGGATGAGC 2380 29 100.0 32 ............................. ATTGTTCGATGAAAAATGTTCGCATCTCGTGT 2319 29 100.0 32 ............................. CGAGCGGATCGGTGTCGATGGCTATATTGAAA 2258 29 100.0 32 ............................. ACGACAACGGGGACGGAACAGCTGACCGTTGT 2197 29 100.0 32 ............................. CAACGCATGCACTTCTGCGATATAAGGCGTGG 2136 29 100.0 32 ............................. CATTGATTACGACCGCACTCTTTGCTGTTGGC 2075 29 100.0 32 ............................. GAGGCAAAAATGGAAGACAGAGCACAGGTAGC 2014 29 100.0 32 ............................. GAGCTAAAACAAACTCCCATGATTTCAATCAA 1953 29 100.0 32 ............................. AAGACGGGAGGGATTCAAACGGATGTCTAAGA 1892 29 100.0 32 ............................. GAGAGCATTGTTCATCACCGGGCATAGTTGAG 1831 29 100.0 32 ............................. CAGCGCTTGAGCTTAAACACTAAATAAATCCT 1770 29 100.0 32 ............................. TGTAGTTCGTTGACTTTGCGAACATGATTTTC 1709 29 100.0 32 ............................. TCTGAAGTAAACCCATTATGTGCCAGTACGCA 1648 29 100.0 32 ............................. CTGGTGAACTACGATTATTACGTCGCCGAAGC 1587 29 100.0 32 ............................. CCAGCAGCTCGGCTGCTGCTAAAGCTGTCGAT 1526 29 100.0 32 ............................. GTTTTTGCAGGACTCAGCAAACAATCAATAGA 1465 29 100.0 32 ............................. TCGGGTGCAGGGCTTATCTGTAAAGAAGACCC 1404 29 100.0 33 ............................. ACAACAACCCACTCAATTGCAACATCGATAATC 1342 29 100.0 32 ............................. TGCACAGGTATAATTCGTTGAATTGCTCGGGG 1281 29 100.0 32 ............................. ATAGACGCCCCTTTCCCTGAACGACCGTCACT 1220 29 100.0 32 ............................. TGATCCGCTATCATTGGTGCAGCTCCTATAAA 1159 29 100.0 32 ............................. CCTCCTGGGTACGTTGAGCATTATTATAAAAA 1098 29 100.0 32 ............................. TTCGTGAGCCTTATCGTAAACGGTCGGGTAAA 1037 29 100.0 32 ............................. AGTGATGAAGCACCGGAGTAGTCCCAAAAATG 976 29 100.0 32 ............................. GGGGCAAAAAGAGCCCCCTTTATTCATGCCTG 915 29 100.0 32 ............................. TTTAACATGAAGCTTGCGTGCCTCGTTAAGGA 854 29 100.0 32 ............................. CGCCCGAGGGGTCACCCTACGATTTTATCCAA 793 29 100.0 32 ............................. GGGCTGTAAACGTTGTTGCTGTCCCCATACGT 732 29 100.0 32 ............................. TGTTCAGGTCCGACGAAGAAAACGTCATTGAA 671 29 100.0 32 ............................. GACCGTAAATTCCAAGCGGCCGACATGATATC 610 29 100.0 32 ............................. TTCGACGCGGGTGATCTTATAATCTGTTGCCC 549 29 100.0 32 ............................. TTGGTTCGCTACTTTTAGCACATCATTAGAGT 488 29 100.0 32 ............................. ATTTATTGCAAACCAGCGTGCGGTTATCAGCA 427 29 100.0 32 ............................. GTGCTGGGCGAGTGCGGCATCGGCGCTCGATG 366 29 100.0 32 ............................. CGTAATCACGTGGATCGACTTGAGCAGGACTA 305 29 100.0 32 ............................. CACTCCATCCCTTACAGCGTCATGTTTAACAA 244 29 100.0 32 ............................. AACGCACTCTATCAGCGCGCGTATGTCGGGCT 183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 68 29 100.0 32 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : GTTAGTTTAATGATTATGTGTGCAACAATTGTAGTGGCATAGTGAATTTGGCCATCTAAATAGACGAAGTGATAGACTCACTTTTCGCAAATGGGTGGCAGATATGAAGAACACAAGACCGACATTCAGCGCTGAGTTTAAGCTAGAGGCTGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99991-98009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHC010000082.1 Shewanella algae strain A41 A41_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99990 29 93.1 32 .T...........T............... GGGCTTAGGAGATTTGCGCTCAGGTTGTCCAA 99929 29 93.1 32 .T...........T............... GGGGATTAACTAGAATTGATTTGTCGAATCGA 99868 29 93.1 32 .T...........T............... CCATACGCAACCACTGATTTTGCTTTTGGTTC 99807 29 93.1 32 .T...........T............... GATTTCGACAGTTACCATTACTCAACCTTAAG 99746 29 93.1 32 .T...........T............... AAACAGCTGAACACTACGGTTTACCAGTTGCA 99685 29 93.1 32 .T...........T............... TTGGTGGTGATTATGATTATCGTACTGAATGG 99624 29 89.7 32 .T...........T.....A......... TGGTTCGTCTGGTTTGTGATTGGGCTCAATAC 99563 29 93.1 32 .T...........T............... GGCGAGCTGGCCGCCGTTAACACCGAAATCGA 99502 29 93.1 32 .T...........T............... AGCAGCGCGAATCCCTCGGCCGCCCTATCAGT 99441 29 93.1 32 .T...........T............... GCCGGAACCGTAACCGTTAACGAGGTGGCCGA 99380 29 89.7 32 .T...........T..............T CAAGGCTTAATCGCCTGATCAAGAACCTTGGA 99319 29 96.6 32 .T........................... TCACCCTGGAGTCAGCGGCCTGAGATATTGCA 99258 29 96.6 32 .T........................... ATTTACTTGTAATCATAATTGAGGGAACAACA 99197 29 96.6 32 .T........................... GCCAATCTCAACAACACAGATTTAGCCAGTAA 99136 29 96.6 32 .T........................... GCAGGGCAGGCGCAGCTAATCGAGTGGTGAAA 99075 29 96.6 32 .T........................... CCAGATACTCTTTGGTACCTGCCGGCAGTATT 99014 29 96.6 32 .T........................... CACTGTAGGAACGCTGAGAATTGATATTTCAC 98953 29 100.0 32 ............................. AGCGCCCAGACAGGCGGTCAGGCATTAGGGGT 98892 29 100.0 33 ............................. TATCGGAGGTCGAATGCTGGTTAAGCCATTGCC 98830 29 100.0 32 ............................. TCGCAGAACGTGCGCTGGAATGCGCGGCTTGG 98769 29 100.0 32 ............................. CCGCTTGAGTATGTCGAGCGTGACGGCTACAC 98708 29 100.0 32 ............................. CGCGTCCTTGGCCTGCTTGCGGCGATGGATTT 98647 29 96.6 32 ............................T GTTTTAGTCATTTTCGCACAGATACCGCTGTG 98586 29 100.0 32 ............................. GTGAGAAGGTTCTTTGATGACCTGCTCGACTT 98525 29 100.0 32 ............................. GGGTGACGCATGGCACGTAATTCAATCAAGCT 98464 29 100.0 32 ............................. TAACAATCGTTTCATAGCTTGCCCCTTCTACA 98403 29 100.0 32 ............................. GGTTGGCCTGCAACTCAACCCCGTATCTAAAA 98342 29 100.0 32 ............................. TCACAGAATGAGAGAATCGATCCAAACGGCGA 98281 29 100.0 32 ............................. GAACCCTAACTTGCTTTGTTGGCTCAGCGACC 98220 29 100.0 32 ............................. TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 98159 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 98098 29 96.6 32 .T........................... TCAAGCCAAGCGGGAATGAAGTTGCAACTGAC 98037 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 96.3 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GATACGTGACGGGGTATTACAGTCAGCTTAGACCGCATCAATATAACGGTGGGCTGACACCGAACGAGTCAGAGCGAAGATACTGGCTTGAATACAAAACCGTGGCCAATTTAACTTGACCACTACAAATTGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACACTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTACGGGGTAAACCTGCCTGCTCGAATAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GTTCCCCGCACTCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //