Array 1 281804-284235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJI01000003.1 Akkermansia muciniphila strain BIOML-A14 scaffold3_size384060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 281804 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 281869 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 281934 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 281998 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 282063 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 282127 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 282191 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 282257 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 282322 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 282387 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 282451 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 282516 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 282581 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 282646 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 282711 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 282776 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 282841 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 282905 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 282970 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 283035 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 283100 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 283165 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 283230 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 283295 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 283360 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 283425 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 283490 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 283555 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 283620 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 283685 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 283750 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 283815 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 283880 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 283945 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 284010 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 284075 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 284140 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 284205 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118287-124012 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJI01000001.1 Akkermansia muciniphila strain BIOML-A14 scaffold1_size511624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 118287 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 118354 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 118421 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 118488 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 118555 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 118622 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 118689 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 118756 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 118823 33 100.0 34 ................................. CCCGGTAGGTAAAATAGTCCACACCGCCGTTACA 118890 33 100.0 33 ................................. TGCGACGTCATACTTAACGCCCTGCCACCTGTG 118956 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTGGCCC 119023 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 119090 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 119157 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 119224 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 119291 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 119358 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 119425 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 119492 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 119558 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 119625 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 119692 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 119759 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 119827 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 119894 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 119961 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 120028 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 120095 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 120162 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 120229 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 120296 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 120363 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 120429 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 120496 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 120563 33 100.0 34 ................................. CACACTTGCACCATGTCCAAATCCTCAAGGGCGG 120630 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 120697 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 120764 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 120831 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGAAA 120898 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 120965 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 121031 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 121098 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 121165 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 121232 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 121300 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 121367 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 121434 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 121502 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 121567 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 121635 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 121701 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 121767 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 121834 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 121901 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 121968 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 122035 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 122102 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 122168 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 122235 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 122302 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 122369 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 122436 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 122503 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 122570 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 122637 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 122704 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 122771 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 122839 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 122906 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 122974 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 123040 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 123107 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 123175 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 123242 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 123309 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 123376 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 123444 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 123511 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 123577 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 123644 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 123711 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 123778 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 123844 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 123911 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [123930] 123980 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 86 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //