Array 1 36346-37513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUYB01000017.1 Pseudomonas aeruginosa isolate 15.211Ba, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36346 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36406 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36466 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36526 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 36586 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 36646 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 36706 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 36766 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36826 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36886 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36946 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37006 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37066 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37126 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37186 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37246 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37306 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37366 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37426 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37486 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48346-46038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUYB01000017.1 Pseudomonas aeruginosa isolate 15.211Ba, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48345 28 100.0 32 ............................ GGCAGCTGATATGTCCTGACACGGGAATCCGC 48285 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48225 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48165 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48105 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48045 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47985 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47925 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47865 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47805 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47745 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47685 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47625 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47565 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47505 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47445 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47385 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47325 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47265 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47205 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47145 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47085 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47025 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46965 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46905 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46845 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46785 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46725 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46665 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46605 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46545 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46485 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46425 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46365 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46305 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46245 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46185 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46125 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46065 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //