Array 1 1675-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTMY01000078.1 Escherichia coli strain 37298 37298_S29-contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1674 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1613 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1552 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1491 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1430 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1369 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1308 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1247 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1186 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1125 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1064 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1003 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 942 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 881 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 820 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 759 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 698 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 637 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 576 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 515 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 454 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 393 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 332 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 271 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 210 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 149 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 88 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 27 27 89.7 0 .A.........................-- | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15343-15737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTMY01000106.1 Escherichia coli strain 37298 37298_S29-contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15343 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 15404 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 15465 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 15526 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 15587 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 15648 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 15709 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //