Array 1 106079-104950 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLX02000015.1 Nonomuraea phyllanthi strain PA1-10 NODE_15_length_270168_cov_44.086113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106078 29 100.0 32 ............................. ACGGCGATGTCGCCGACCTCGATGCCCGCCGT 106017 29 100.0 32 ............................. GTGCCGCCGGTGCCGTAGTGGCACTCCCACCT 105956 29 100.0 32 ............................. TTCTCCAGATAGGGCCGCATCTCGGGGTCGTC 105895 29 100.0 32 ............................. ATCAGCTCCGTGCCGCTGGTGCCCGCGCTGCC 105834 29 100.0 32 ............................. TCGCCGCCGGGCTTCATCTCGCCTTCCTCGAT 105773 29 100.0 32 ............................. GACGCACTGGACAGCCAGGCTGAAACCATCAG 105712 29 100.0 32 ............................. TCGTTCCGTTTCGTTCACCGGCGCCCCGTCTC 105651 29 100.0 32 ............................. GACGCACTGGACAGCCAGGCTGAAACCATCAG 105590 29 100.0 32 ............................. TTCAACGAGGAGCTGGTCGAGGGCATGGGCGT 105529 29 100.0 32 ............................. GAGATGCGCGGCTTCCGGGAGTGGGCGCGCAC 105468 29 100.0 33 ............................. TTCAAGGACGACGTCGAGAAGGGGTTCTCTGGG 105406 29 100.0 32 ............................. CCGAACGCCGGATGCGCGCCATCTTGGCGTAC 105345 29 100.0 32 ............................. CCCGCGATCACATTGGCGGCCCTGACCCTGCG 105284 29 100.0 32 ............................. AGAACAAGAAGGCCACGTACTGGGCCCAGCGC 105223 29 100.0 32 ............................. ACGGTCGGCATTGGCAAGCTGCTCAGGCTGCT 105162 29 93.1 32 ..............T..........C... TCCCGCAGGTTACTCTCGCCGCTGGTGAGGTC 105101 29 96.6 32 ...................A......... GCGCACGGCAAGTACCTGCGGGTCGGCGCACC 105040 29 93.1 32 ................C........C... ATCGCGATCATGGCTCAGGTGGTGGGCATCTC 104979 29 93.1 0 A........................C... | G [104957] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.7 32 CTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : TCGCGAACTCAAGCACCGGGCCAAAGGCGAAACCCGGTCGGTTCCCATCCACCCAGAACTTTGTGCAATGCTCCGCGAACACGTTCAACAGTTCGGCACCGGCCCCGATGGACGCATCTTCATCGGCCCACGCGGCGGTCAGATGACCGACCGCGCCTACCTCAAGATCTTTCACGAAGCAAGAACGCAGGCTTTCACCTCAGTGGAGGCGAAGTCCCCACTCATGGACGTCCCCTACTCCCTCCGACACGCATGCGTATCCACATGGCTAAACGCCGGAGTGCCTGCACCCCAGGTCGCCGAGTGGGCAGGACACAGCGTTGACGTCCTCTTGCGGGTCTACGCCAAGTGCATCTACGGTCAGCAGCGGGACGCCATGCGCCGAATCTGGGAAGCAACTCAATGATGCAACCACCTCTCCTTCGGCCCTCGTCTAATCAACGACAAACTCCGACATCCACATTTGCGCAGGTCACCGATATTTGCCCAGTTCAGCAAGT # Right flank : ATGAAGGAGTTTATGGACGCTTGCCACTGAGGCCGTCCCCACGCCCACAGGATCCACCCGTTCGAGCTTTGATCGAATGGGAACGCATTGGGAACGATCAGCCGTAGTCGGCTGGTGTCAGCCGTAGACAGCCGGACACAAAGCGAGAGGCCCGGCACCGCGTTTCCGCTGGTGACGGGCCTCTTGCCGCTGGTGTGGCAGGTGCAAGGTTCGAACTTGCGTAGGCTGAGCCGACGGTTTTACAGACCGCTCCCTTTGGCCACTCGGGCAACCTGCCGTGCCATCCGCTCTCGCGGCGACACACAGAAGGATAGCGGACTTCCGAGGTGTACGTGACACCGGTTTGTCCTGAGCCGGATCACTGGTGCGAGGCGTGCCGAAAGGGGGTTGGGCGGGGCGGGAGGGAGCGTCGTACAGGGGGGCGGTGGCCTGCGCGGCGGGCCGATGCTGGCTAGGCTCGTTCGCTGGGTCCCTCGCGTTCGCGTACGGCGGGGAAGCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123051-121867 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLX02000015.1 Nonomuraea phyllanthi strain PA1-10 NODE_15_length_270168_cov_44.086113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123050 29 100.0 32 ............................. GCGCGCTAGCGCTGATGCAGGATCCCGATATC 122989 29 100.0 32 ............................. CTCCTCCCCAGATCATCATCCCCAGTCGGCAG 122928 29 100.0 32 ............................. TCGGGGCAGTTGAACTCGGTGGCGGAGGCATC 122867 29 100.0 32 ............................. ACATGCCCGAGATCACGAAGAACGTGGCCGAG 122806 29 100.0 32 ............................. ACGTACACGGCCAAGCCCGGCAGCGTCACCGT 122745 29 100.0 32 ............................. CTCGCGAACGCCGGGGCGGGCAACACGATGTC 122684 29 100.0 32 ............................. GTCGCCGTCGCCTACCTTGACCGGGAGTGGTT 122623 29 100.0 32 ............................. CCTCCGGCCGGTCCTTCGGGTCTGGCGCTTTC 122562 29 100.0 32 ............................. TCCATGTGCTCGATGATCTCGGTGGACTCGGT 122501 29 100.0 32 ............................. GATCTCGACGTAAGCCTGGCTGAGAACCCCGC 122440 29 100.0 32 ............................. GTAGTCGATGACCGTGGCGGTGGCGCGGAAGG 122379 29 100.0 32 ............................. GTTCGCATCTGGCGGCAGGTCCACACCTCCCA 122318 29 100.0 32 ............................. CACGAGAGCCCCGCACTGGGCGGGGCTCAAGG 122257 29 100.0 32 ............................. ATGTGGGTGAACGGGATGGTGAACGTGCTGCC 122196 29 100.0 32 ............................. AGCGCACCTACCCGACGCCCACCCCCGAGCAG 122135 29 100.0 32 ............................. GAATACAGCCAGACCTACATCGCCGCGCAAAC 122074 29 100.0 32 ............................. CAGCGCCAGGTTTCGACTGGGGCGGTGGCGAC 122013 29 89.7 32 .......T...........A..C...... AACCCTGCTCCGGACCCGGTCGCCATGCTGGT 121952 28 86.2 29 .............G.A...A.-....... GGCATCGCTGACCTGCTGATCGCTGCCCC C [121944] 121894 28 79.3 0 ..G........A......C..-.A....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.8 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : GTAGTCGACACCGGCCCAATCGTGGCCGCGACCTTCCGGGACGATAAGAACCACGAGCGCTGCGTACAGGAGCTCACGCGCTTTCGCAACGCTGGCCGGCCACTCCTCGTCCCCAGCTTCGTGGCCGGCGAGAGCTGCTACATGATCGGCAGGCTCGGCGGGGCGAGGGCGGAAGCGGCGTTCCTCCGGCTACTCGAGTCCGGCTGGTTCCGGCTCGTCGATCTCACAGACGCGGATCTCGCGAGGATCGCGGTCCTCGTTGAGCGGTACCACGACCTACCCTTGGGCGCCGCCGATGCCTCGGTGGTGGCCGTGGCGGAACGGATGCACGTCACCGACGTGATGACGATCGACATTCGCGATTTCTCTGTGGTCCGCCCGGCTCACGCCCCCGCCCTGAATCTGTTCCCCAGATAGTCCATTCGGGGTGCGGTGCTACGGATGAGCCTCCAGCTCGTGCGTGGCAGCTCCGAATCGGACCTCAACCATCTTGCTCGATG # Right flank : GTACCCGAGCAGGGGGAACGCTCAAGCGATCCCCACGCACATGAGGCGGCCGGAGAGGCGCTGTGACCCACAATGAAGGCTAGGCGGTGGCCCACCGGTTGACGCAAGCCAGGGCGCACAAGACGGTGACCTCGATAAGCGGCCCGGCATTCCCAGCCAGAAGCTGGCCGAAGGTGACACCGGAGACACGGACCGCGACCATCAACTCGACGTGATGTCGGCGGCAGCGGAGCGCCGCGTGGTCTTGTCGTACGGCGGTCGTTGTTCTGGCAAGAAAAGGGACCTGAAGCGATCAGCCTTCCGCCCGGGTCATCGGCCGCGGATCTTTCTTCAATGCCTTGGCCAAGGCAGCAACGAACGCCCCAGCACCGAAGTCATACCTCGCGTCGGGCAGCCACGTCGATGATCTTAAGGGTGACCATGAGCAACCTTCCGCCGTCCGCGTTCCTACGTAGGTCACCATCCGCCCCGAGGCACGGCTACAGCCTGATGCGGGTTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //