Array 1 1939179-1941858 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLM01000013.1 Listeria monocytogenes strain Lmo2050 NODE_16_length_2469207_cov_46.673836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1939179 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 1939245 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 1939311 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 1939377 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 1939443 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 1939509 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 1939575 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 1939641 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 1939707 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 1939774 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 1939840 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 1939906 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 1939972 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 1940038 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 1940104 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 1940170 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 1940236 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 1940302 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 1940368 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 1940434 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 1940500 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 1940566 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 1940632 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 1940698 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 1940764 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 1940830 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 1940896 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 1940962 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 1941028 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 1941094 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 1941160 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 1941226 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 1941292 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 1941358 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 1941424 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 1941490 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 1941556 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 1941622 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 1941688 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 1941754 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 1941820 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [1941845,1941851,1941854] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //