Array 1 5762-5375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEO010000002.1 Pectobacterium brasiliense strain NAK:434 GHAOKMBI_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5761 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 5701 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 5641 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 5581 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 5521 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 5461 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 5401 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 93.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ATTATCGGGATGCGTCGCTGCCGCGACGCATTTTTGAGGGCTACTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14393-15966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEO010000002.1 Pectobacterium brasiliense strain NAK:434 GHAOKMBI_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14393 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 14453 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 14513 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 14573 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 14633 28 100.0 32 ............................ TTGATCCCATGCCGTTAATTATACGGACAATT 14693 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 14753 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 14813 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 14873 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 14934 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 14994 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 15054 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 15114 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 15174 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 15234 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 15294 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 15354 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 15414 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 15474 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 15534 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 15594 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 15655 28 96.4 11 .............C.............. CTCGACCTGCG Deletion [15694] 15694 28 78.6 32 CGG.....G.A.G............... TGATGAGGATCGGCTCGCTAAAATCGGATATG CATCA [15706] 15759 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 15819 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 15879 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 15939 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 27 28 97.7 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CCTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 22824-21896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEO010000002.1 Pectobacterium brasiliense strain NAK:434 GHAOKMBI_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22823 28 100.0 32 ............................ AGAATTCATACGCATTTCCGGTTACGCCATCC 22763 28 100.0 32 ............................ GGAAACCCAAAGCCATCACTACGCTGGTGGCC 22703 28 100.0 32 ............................ TTACTTCCCTGAGGTGGAACTAACAGCATTTT 22643 28 100.0 32 ............................ CAGCACGGCTTTACTGGTCTGTGCATCGCACC 22583 28 100.0 32 ............................ TAAAACCATCACAAAACTATCACAACAGCATC 22523 28 100.0 32 ............................ CCGCGCGGGGCGTCATGCAGAAAGAAAATCCG 22463 28 100.0 32 ............................ GCCGCCGTGCTGCTGCTGGGCGTAGCTCTACG 22403 28 100.0 32 ............................ TGTGCCGCTTCCTGCGCCGCTTGCGCGGCTTC 22343 28 100.0 32 ............................ AATGCGCAGTTGGAAGCGCAAAAGACACAGGC 22283 28 100.0 32 ............................ TGATTACTCCGGCGCGGTTGGCGATGGGCGGA 22223 28 100.0 32 ............................ AACAAACCGATTAGTGAAGTGATTGCTGATTT 22163 28 100.0 32 ............................ AGCCCCGCCGATAGACCCCGTCACATACGGAA 22103 28 100.0 32 ............................ GGCAATGGATGCCGTGCTGGCCTCCGCTGATG 22043 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 21983 28 85.7 32 .....T.....T.C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 21923 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGACTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //