Array 1 335325-335772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRTW010000002.1 Klebsiella oxytoca strain KLO00006 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 335325 28 100.0 32 ............................ ACAGACCAGCCGCACCCGTTGCGACCTGTCTG 335385 28 100.0 32 ............................ TGGATTCAAGTGCAGAATATCGGATACTGGAA 335445 28 100.0 32 ............................ TGCAGAACCGACTGGAAACTGTCAAAGAGATT 335505 28 100.0 32 ............................ TCTGAGTTCTGCTTCCCCCACAGATATGCCGT 335565 28 100.0 32 ............................ GTTAACGATGCACTGGTGGCAATGGTCCGCTC 335625 28 100.0 32 ............................ AACAATGAAGTGCCGAGCACCGATATTCGTGA 335685 28 100.0 32 ............................ GGATGACCGATCGCTTCGGCATTTTTGAATTG 335745 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAAATATTGATTTTTTTAATGTTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATGAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 349032-349719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRTW010000002.1 Klebsiella oxytoca strain KLO00006 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 349032 28 100.0 32 ............................ AAAATGTCCGTCCCGGTATCGATAAGGGACGC 349092 28 100.0 32 ............................ ACCTGGCGTATCCATATCCAGCAAAACACCAT 349152 28 100.0 32 ............................ GTACTCCACCCGGTGGCTGGATGAGTTTGACG 349212 28 100.0 32 ............................ GATAAGCTTCTTCTGCCTTTCTGGCTTCTTTT 349272 28 100.0 32 ............................ AGACCTTCATACAAATCGGAACGGTCAAAGGA 349332 28 100.0 32 ............................ CGATATGTTCGTCGAGAAGTGGGTGCTCCCCC 349392 28 100.0 32 ............................ ACACAGCCAGTATGAACTTCGTGCAGGCTGGG 349452 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 349512 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 349572 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 349632 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 349692 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAATAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAATCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAATGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 358149-358657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRTW010000002.1 Klebsiella oxytoca strain KLO00006 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 358149 28 100.0 32 ............................ CACGACGCAGTACCAGAAGCGGACAGGTTAGC 358209 28 100.0 32 ............................ GCTTTCGCGGCATATCCTCGCCGTCAAAAAGA 358269 28 100.0 32 ............................ TTACGAAAAATTGCCAAAAGATGTTCGTGAAG 358329 28 100.0 32 ............................ CAGAAACAATGTGATGGCGCTTGGTCTGCCGC 358389 28 100.0 33 ............................ TTGCCATCAGGCGCATACACCGGCGGGGATCGG 358450 28 100.0 32 ............................ ATGATACAGGCATATGAGGCCGTTAAGCCCAC 358510 28 100.0 32 ............................ TACATCGGGGTCAGTGTCGCCAATGGTTGGTG 358570 28 100.0 32 ............................ TTCACGGCACGCCATGCCGATTCCAGATATCC 358630 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGTAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //