Array 1 30934-28014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYU010000001.1 Ruminococcus bicirculans strain 1001217B_150727_F5 NODE_1_length_321894_cov_55.7093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30933 32 100.0 33 ................................ TGAAATTAATTTAGCTCATACTCGATTGCCTCA 30868 32 100.0 35 ................................ AAAATGCTTTTAATCCAGTTTTCCGAATTTCTGGG 30801 32 100.0 34 ................................ TATAACTCTTTTCACGTCCTCAAGAGCAAACATG 30735 32 100.0 33 ................................ GTTTTCAAAGCTCAAGCCGTTATCTTCCGTATC 30670 32 100.0 33 ................................ TGCCAGGTCATTAAGTTTCACGATTGCACTTTG 30605 32 100.0 32 ................................ TAAAACACGCCTAAATTTTAATACTCAATCCC 30541 32 100.0 34 ................................ TTAGCGGTTATTTTAACCGCTATACGATTGAATC 30475 32 100.0 35 ................................ TGAGGACGGCAAAAAGTCATTTAAAGCTGGAATAA 30408 32 100.0 33 ................................ ATGGAAATTGACGAAGATTTACGCATAATCGGT 30343 32 100.0 33 ................................ TTTGCAGTGACCACCGCAAACCGTCTTGATTAG 30278 32 100.0 33 ................................ TGCTAATATTTGATTTTTTACAATAATTGTCAA 30213 32 100.0 34 ................................ TTTCAAATCTTCAGGGCGCAGGGAACTGGTGAAC 30147 32 100.0 34 ................................ CCAACGGCTCGCCTTTTTCAGCCGCAGCAGTTAT 30081 32 100.0 34 ................................ CATGCGGTCATTTTGAGTATATAGGGCGTATAAA 30015 32 100.0 34 ................................ GCTAGTAGCCTTATAATTCAAAATATAAGCATAC 29949 32 100.0 35 ................................ GGACGAATTTGAAGTTGTCAAGGGTAAGAACTATG 29882 32 100.0 34 ................................ CTCGCTGGTCTGCGTCTGCTACTGCGTCAATAGA 29816 32 100.0 34 ................................ GGAAGAACTGCTAAAATGTCATGGCAAACGGGTC 29750 32 100.0 33 ................................ CCCGTGATATATGAACGATATGTCTCTGCTGAA 29685 32 100.0 35 ................................ GCTCCGAGTATATAAGAGGGGAATAATTCCCCTCA 29618 32 100.0 33 ................................ CCGCAGCGCACACAAACGGCAGGCGGACGGACA 29553 32 100.0 33 ................................ GTACTGCTCAGGGGTTATTTTCCCCCTGTCAGC 29488 32 100.0 33 ................................ GCAGGTAACAGATTTACAAATCAGCCCTTGTTC 29423 32 100.0 33 ................................ GAGATTGTCGGAAACGTTTATGACAATCCTGAA 29358 32 100.0 33 ................................ GCTTTCATACTTTTCTCCTGTGATTTCCTCGTA 29293 32 100.0 34 ................................ GCTTGGAACTGGTATGCGATAGCTGTCGTTGCTG 29227 32 100.0 34 ................................ ATGGCTGTCGGCTTCAGCGATGAACAAATGACGC 29161 32 100.0 35 ................................ AGGTACCTTTTCGGTATCTGAGGACGGAACAGTTA 29094 32 100.0 34 ................................ ATTCTGCTTGTACACCTTAATGATAAGTGGTACG 29028 32 100.0 33 ................................ TTTGTACAAGGCGAATTTAGACAATATTTAAAG 28963 32 100.0 33 ................................ GACAAATACGTTATTTGCGGTTATAGAATCCCG 28898 32 100.0 33 ................................ TTGCGGAGTGCGTTTATCCAGGCTGAGGACGGA 28833 32 100.0 33 ................................ TTTTAAGATATGATGATATAAGTGAGTTAATTA 28768 32 100.0 34 ................................ GACAGACAGTGTATAGTCTGCTATAATTAGATTG 28702 32 100.0 33 ................................ TGAAGCTTGCCGGTAATCGCGATACGACGGCGC 28637 32 100.0 34 ................................ CCTGCGGTCGACCGCGCTTCGCGCGCCCATATTC 28571 32 100.0 35 ................................ GACATCGCCTTTAAGCCTGCGGACGTCAACCTGCG 28504 32 100.0 33 ................................ ACGGTAATGATGTTCGCTGTAACGGGTTTACAG 28439 32 100.0 33 ................................ GTTAACATATCTGCAATGCAAGCTGAGGTCAAG 28374 32 100.0 36 ................................ CAAAGCCTGTTGTCAAGGTCGAAGTTGAAATGAAAG 28306 32 100.0 34 ................................ GATCTCAACGGTCATACCCTCACAGAAAACCTAT 28240 32 100.0 34 ................................ TCAGCACACAATAATTCTGTTGAAAGCTACAAGC 28174 32 100.0 33 ................................ ATCTATATTTAGCAATTCAAAATACAGATATTG 28109 32 100.0 33 ................................ CTTTGTAGAATTAATAGCAGACTTACCTGACTA 28044 31 90.6 0 ..........................C-..T. | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 99.8 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGTGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAACGCACAGTGAACAAAATCAAACCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTCGTTTCAACGCAGGACTTATCGATATTGAATAATACAAATAACCGCTTGACTAAGGTCGGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGCTTTTCGTCAAATTCGCCAATTCACACCCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGTGTATAAGTAGAAGGGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGACACACCTTAGCTATACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8043-8226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYU010000016.1 Ruminococcus bicirculans strain 1001217B_150727_F5 NODE_16_length_54874_cov_74.5608, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================ ================== 8043 23 100.0 32 ....................... ATTACGCTCAAAACGAGTAATTACTCGGGAAT 8098 23 100.0 31 ....................... TAATATCTTAGACATTATTTTTGTAAGGTAA 8152 23 87.0 29 T.A....T............... TAGTATTTTGAGCATAAAAAACATTAAAA 8204 23 95.7 0 ..........T............ | ========== ====== ====== ====== ======================= ================================ ================== 4 23 95.7 31 AATTACAATTCATAATGAGATAT # Left flank : TAGGTTCGCCGCCTAAGAGCGTAAGTCCTTTTATATAGCCCTTTGAGAGGGCGTTAATTATCTCGTCTGCGGTGGTATCTGTGAAAGGCTTGCCGTAGTCAAAGTTCCAAGTGTCAGGCTGAAAACAGCCTTTGCAGTGGTGTCTGCAACCTGATACGAACAGCGTGACCCTCACTCCTGATCCATTGGCGATATCGGTTTTCTTTATCTCACAATAATTCATTTTCCGCTCCTTTCATACATACAACGCAGGGCAATACGCTTTTGTATTGCCCCGATAGTTATATGCTGTTTGCTGTTTTATGTCAATAATAATGTTCATTATTTTCGGATTTTGCAGTTTTGAGTTTTTGAGTTTTCCTTGCTATAATGTTCATTTTTTTGACGAGTTTTGATTTTTGAACTTTTGAGTTTTAACGGCTATAATGTTCAAAAATTTTCGATTTTGCTAGAAAAAATTTTTGGGTTTTGGGTGAAATTGTAATTTTACAAATGTGTTT # Right flank : TAATAGATGTATACTGTATCTCATTATCTTCTACAGAATATTATAACACTTTTAAATGAGAAAGTCTATATATTTTGCGATATTAATATTAATGCAGCCTATTAAAACTTCATATTTATATCGCAAAGCTTCTTGTAGCGTTCTTCACTTAGCTTTCCTATGTTGTAGTTCCTTCTTTGCAGTACCACCCAAACGCCAAGTTTTTCACCCTCAAAAATAGTTCGTTTTGTTATATCTGAACTTCCGTTATTTTGTTGTATATATCTTTTATATTGTTCGTATCTTCTTTCCCATTCTGCAGCTAATGGATCAAGTGTTATTCCTAATGATACAAGAGCGTCTTCTTGTGATCGAGTCAGTTTACCCGCCTTATATTTGTCTCTCTGCGATTGCAACCAATTGCCTAGAAAGACACCTTTATAGTGATCACGCTTTGGTATATTGGCAGTGCCACATTCCTCTTTGTATTCACAGAGTAAGGCATACCCTTTTTCCCAAGA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTACAATTCATAATGAGATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 3285-3050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYU010000042.1 Ruminococcus bicirculans strain 1001217B_150727_F5 NODE_42_length_12592_cov_60.7544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3284 36 100.0 30 .................................... CATAGCTTTCTCCTCCTTAATTTTATTTTT 3218 36 97.2 30 .................T.................. TGCGCTGACCGCAGTATATCAGCCGTAGGC 3152 36 100.0 30 .................................... CACAATACTTTGGCTGCTTTTCTTTCGAGT 3086 35 86.1 0 ...............A...........A-..G...G | CG [3053] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : AACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTAAGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCGGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACAGGAGGTGATAAAAATGAGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGAAATTGAGAGCTGTGACGAGATCACAATAGACTAGGGAGGTGATAAAAATGGGAAAGACGATCCTTACGACTATCCTCATAGCCGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGAAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATATATTAAAGTGTCGATAAAATAAGTTTGGTGTTTTATTACAAAATATCATTGATTATTTTGTCAACTTTAAC # Right flank : TTTAACATTAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGTTCAAAGCGGCTGAGATAAATAATAATGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGTGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGACAATAATGACTACAACAAAACTCAGCTTTCTTCAAAGGACAACAGCAATATCGAGCTTTGTGGTGTAAACGAAGTAAACATCACTTTTTCTAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAACACTTCAAACCCTACTCACAGAAGCGGTGAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //